Beckman Coulter CEQ 8000, User Manual

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User’s Guide 301
The Pedin export requires a list of locus names, in a file named “ LocusList.txt ”. This
file must be stored in the CEQ application’s ...\export or root directory. This text file
must have only one locus name per line. The order of the loci included in this file will
determine the order of the loci in the Pedin file.
The Pedin export also requires that pedigree information (at least the individual ID) be
included in every result in the Study. Additionally, at least one result per individual
must have a complete pedigree (i.e., Pedigree ID, Individual ID, Father ID, Mother ID
& Gender).
Pedigree information is associated with samples through the sample plate editor, using
the sample properties set “Pedigree” template. Alternatively, the pedigree information
can be associated with results, using the single result view’s property set tab.
DMPopulation (Discovery Manager) *.txt
This is an export of the Study's pedigrees and genotypes. The DMPopulation file is
designed to be imported into Genomica’s Discovery Manager application. The
DMPopulation file can also be imported into Discovery Manager as a
DMFastPopulation file. The pedigree and genotype information from each result in the
study is included in the DMPopulation file.
This export produces two files:
• *.txt = the DMPopulation file
• *.log = a list of processing steps and errors encountered during the export
The DMPopulation export requires a list of locus names, in a file named
“
LocusList.txt ”. This file must be stored in the CEQ application’s ...\export or root
directory. This text file must have only one locus name per line. The order of the loci
included in this file will determine the order of the loci in the DMPopulation file.
The DMPopulation export also requires that pedigree information (at least the
Individual ID) be included in every result in the study. Additionally, at least one result
per individual must have a complete pedigree -- Population ID (PopID), Pedigree ID
(KinID), Individual ID (SubID), Mother ID (MID), Father ID (FID) and Gender (Sex).
Pedigree information is associated with samples through the sample plate editor, using
the sample properties set “Pedigree” template. Alternatively, the pedigree information
can be associated with results, using the single result view's property set tab.
Genotype Summary Report *.gsr
The Genotype Summary Report has been designed to accommodate Subject IDs, the
occurrence of more than two alleles and the absence of alleles (Figure 165). Use the
“Locus List Editor” on page 302 to customize the LocusList.txt file before exporting
a Genotype Summary Report.
The report layout is described below:
• Column/Row Individual headings are replaced with the heading of Subject ID.
• If the number of alleles is greater than two , the cell will indicate Too many .