Beckman Coulter CEQ 8000, User Manual

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Setting or Changing Display Options
User’s Guide 193
To define the format and contents of the report, select
File | Report Format
. Select
File | Print Report
to print the report without previewing or formatting prior to
printing.
Select
File | Print Preview
to the view the report, shown in Figure 119.
Analysis
Parameters
The Analysis Parameters are the parameters used to produce result data
and output for a given sample, including heterozygote detection and
alignment. If the data has been analyzed using a sequence analysis
parameter set, the sequence analysis parameter set will be printed. In
addition, the alignment template and the alignment parameters information
will be included in this section, when applicable.
This is the information found on the Analysis
and Alignment tabs of the Properties dialog box. No
alignment information will be included if an align-
ment was not performed.
Quality
Parameters
Quality parameters are the parameters that indicate that any given base is
an A, C, G, or T along with a value to indicate the likelihood that the call is
correct.
Trimming Log:
This log details the parameters used in Quality-based and Sequence-based
trimming. It includes the original sequence length, the length after
Quality-based sequencing, the length after sequence-based trimming, the
vectors trimmed and the base sequence in its original and trimmed forms.
For sequence-based trims, an "x" will replace the trimmed bases that are
located further than that specified in the Distance from End setting or if
they are an internal match.
Alignment Results
The alignment results are the text results of the alignment between a
template sequence and a sequence result. The top row of text is the base
number, the second line is the template sequence, the third line is the
sample sequence and the last line is the consensus.
Alignment
Accuracy
The alignment accuracy is the statistical analysis of the accuracy of the
sample sequence. The errors in the alignment are grouped into 50-base
regions and the number and type of error for each region is displayed.