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4-4 Thermo
Electron
January
2004
Cleaning with
Organic Solvents
If you suspect that your flowcell needs to be cleaned, start with the
following procedure using organic solvents:
NOTE: Flowcells are factory-assembled units that should not be
disassembled under any circumstance. If you encounter contamination
problems that cannot be remedied by using this cleaning procedure, contact
your local Thermo Electron representative to arrange for repair or
replacement.
1.
Make certain that the cleaning solvent(s) you plan to use is/are
miscible with the solvent already present in the flowcell and
pump. Isopropanol is a good choice for most applications.
NOTE: If the last solvent in the pump was an aqueous buffer solution, be
sure to pump 25 to 40 mL of HPLC-grade water (or equivalent) through
the system to remove any salts
before
flushing with the cleaning
solvent(s) in order to avoid precipitation problems.
2.
Flush the flowcell with 40 to 50 milliliters of solvent
(HPLC-grade water, methanol, or isopropanol). You should
pump
the solvent through the flowcell with the
chromatographic pump.
3.
When using an LC pump to flush the flowcell, first remove the
column from your chromatographic system to avoid column
degradation. Replace the column with an appropriate length of
tubing, ensuring that all connections are snug and leak-free. If
you use a syringe, always draw the solution
through
the
flowcell.
CAUTION! Never use a syringe to force solvent through a flowcell.
Pressurizing the syringe could cause a leak or rupture, resulting in a
dangerous and uncontrolled spraying of solvent.
Cleaning with
Nitric Acid
Methanol or isopropanol is generally sufficient for cleaning a
flowcell. However, if the flowcell remains contaminated after
flushing with organic solvents, clean it with dilute nitric acid.
CAUTION! Nitric acid is a strong oxidizing acid and can react
vigorously with alcohols (especially methanol). Be sure to wear
protective clothing and eye protection and adhere to your company’s
safety procedures for the proper handling and disposal of corrosive
acids. Flush the flowcell with water to remove all traces of alcohol
before flushing with nitric acid!
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