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Create a Hardware Profile..........................................................................................................................................34
Add Devices to a Hardware Profile............................................................................................................................39
Troubleshoot Hardware Profile Activation.................................................................................................................41
Create Projects and Subprojects.................................................................................................................................42
Create Subprojects.....................................................................................................................................................44
Copy Subprojects.......................................................................................................................................................44
Switch Between Projects and Subprojects..................................................................................................................44
Installed Project Folders.............................................................................................................................................45
Back Up the API Instrument Folder............................................................................................................................46
Recover the API Instrument Folder.............................................................................................................................46
Optimize the Mass Spectrometer.....................................................................................................................................47
About the Verifying or Adjusting Performance Dialog.....................................................................................................48
Results Summary..............................................................................................................................................................48
Add an Experiment....................................................................................................................................................51
Add a Period..............................................................................................................................................................51
Copy an Experiment into a Period..............................................................................................................................52
Copy an Experiment within a Period..........................................................................................................................52
Create an Acquisition Method using the Method Wizard................................................................................................52
Scan Techniques..............................................................................................................................................................53
Single Mass Spectrometry................................................................................................................................................53
Quadrupole-Based Single Mass Spectrometry............................................................................................................53
Time-of-Flight Single Mass Spectrometry...................................................................................................................54
Set Queue Options...........................................................................................................................................................60
Add Sets and Samples to a Batch....................................................................................................................................62
Submit a Sample or Set of Samples..................................................................................................................................65
Set Up Sample Calibration...............................................................................................................................................65
Change Sample Order......................................................................................................................................................66
Acquire Data....................................................................................................................................................................66
Set Sample Locations in the Batch Editor.........................................................................................................................67
Select Vial Positions Using the Locations Tab (Optional).................................................................................................67
Stop Sample Acquisition..................................................................................................................................................68
Batch Editor Right-click Menu..........................................................................................................................................69
Queue States and Device Status......................................................................................................................................70
System User Guide
TripleTOF
®
5600/5600+ System
RUO-IDV-05-7040-B
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Contents