If you generated a report in multiple languages, you can select one or more
reports to be included in your download.
A ZIP file that contains all the selected reports and other files is downloaded.
Results files
The following files can be downloaded from the View Results screen. The files that
are available for download vary depending on the assay used. For a list and
descriptions of plugin output files, see “Output files generated by the
coverageAnalysis plugin“ on page 148.
To download the files, click (Expand)
4
(Download Files). In the Download
Files dialog box, select the files to download, then click Download. The selected
results files are downloaded in one ZIP folder.
Selection
File name
Description
Variants
Snvindel (.tsv)
Snvindel.tsv
File that lists SNV/INDEL variant results in tab-
separated value format (TSV).
CNV (.tsv)
Cnv.tsv
File that lists copy number variant results in tab-
separated value format (TSV).
Variants (.vcf)
Oncomine_<LibPrepID>_
<analysisID>.vcf
Summary of variant results in variant call format
(VCF).
Variant (.tsv)
Summary.tsv
File that lists SNV/INDEL, copy number, and
fusion results in tab-separated value format
(TSV).
Fusion (.tsv)
Fusion.tsv
File that lists fusion results in tab-separated
value format (VCF).
Sequencing results
DNA mapped bam file
(.bam)
merged.bam
Mapped BAM file of combined barcode reads.
Key signal
raw_peak_signal
Key signal gives the percentage of live ISPs with a
key signal that is identical to the library key
signal.
Test Fragment basecaller
FASTAQ file (.fastaq)
rawtf.basecaller.fastq
FASTQ file for the test fragment.
RNA Mapped bam index file
(.bai)
<barcode>
_rawlib.basecaller_align
ments.bam.bai
Mapped BAM index file.
Loading density Figure
Bead_density_contour.png
Loading density image; a pseudo-color density
image of the chip lanes showing percent loading
across the physical surface.
Chapter 9
Review data and results
Results files
9
Genexus
™
Integrated Sequencer User Guide
109
