Table 1–1: MS operating modes:
Operating mode
MS1
Collision cell
MS2
MS
Pass all masses
Resolving (scanning)
SIR
Pass all masses
Resolving (static)
MS1
Resolving (scanning)
Pass all masses
In MS mode, the instrument can acquire data at scan speeds as high as 20,000 Da/s. Use this
mode for instrument tuning and calibration before MS/MS analysis. See the mass spectrometer’s
online Help for further information.
Use the selected ion recording (SIR) mode for quantitation when you cannot find a suitable
fragment ion to perform a more specific multiple reaction monitoring (MRM) analysis (see
for further details) . In SIR and MRM modes, neither quadrupole is scanned,
therefore no spectrum (intensity versus mass) is produced. The data obtained from SIR or MRM
analyses derive from the chromatogram plot (specified mass intensity versus time).
1.7 MS/MS operating modes
The following table shows the MS/MS operating modes.
Table 1–2: MS/MS operating modes:
Operating mode
MS1
Collision cell
MS2
Product (daughter)
ion spectrum
Static (at precursor
mass)
Fragment precursor ions
and pass all masses
Scanning
Precursor (parent)
ion spectrum
Scanning
Static (at product
mass)
MRM
Static (at precursor
mass)
Static (at product
mass)
Constant neutral
loss spectrum
Scanning
(synchronized with
MS2)
Scanning
(synchronized with
MS1)
Constant neutral
gain spectrum
Scanning
(synchronized with
MS2)
Scanning
(synchronized with
MS1)
ScanWave
daughter scan
Static (at precursor
mass)
Scanning
(synchronized with
collision cell)
June 9, 2016, 715004990 Rev. A
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