e.
Click Set to add the filter to the Selected Filters list.
f.
Select and add additional filters to the Selected Filters list as needed, then
click Apply.
The list of variants changes to reflect the filter chain that is applied.
g.
(Optional) Click Save Filter Chain to associate the new filter chain with the
assay.
The filter chain is applied by default to all results that use the assay.
Oncomine
™
TCR Beta-LR Assay GX Run Metrics and QC screens are similar to those
described in “Run metrics“ on page 92 and “QC results“ on page 94. Oncomine
™
TCR
Beta-LR Assay GX results do not include a Summary screen.
• To view the analysis of Oncomine
™
TCR Beta-LR Assay GX expression data, in
the Results > Run Results screen, click the sample name in the Sample Name
column, then click Results in the left navigation pane in the View Results
screen. Results are viewed in two tabs: Sample Results and Sample QC.
• In the Sample Results tab, select from the following options in the Views
dropdown menu.
– Spectratyping Plots
– V-gene usage
– VJ-gene usage
– Clones detected per variable gene
– CDR3 histogram
– Clone Summary
View
Oncomine
™
TCR
Beta
‑
LR Assay GX
run results
Chapter 9
Review data and results
View sequencing results and run metrics
9
Genexus
™
Integrated Sequencer User Guide
105