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HiSeq X System User Guide
61
File Type
File Description, Location, and Name
Phasing files
Contains empirical phasing information by tile. Phasing files are
created at the first cycle base called and updated after each cycle base
called.
Data\Intensities\BaseCalls\Phasing
EmpiricalPhasing_[lane]_[read]_[tile].txt
—Tile is represented with a 4-
digit number that indicates surface, swath, and tile.
Real-Time Analysis
configuration file
Created at the beginning of the run, the Real-Time Analysis
configuration file lists settings for the run.
[Root folder]
RTAConfiguration.xml
Run information file
Lists the run name, number of cycles in each read, whether the read is
an indexed read, and the number of swaths and tiles on the flow cell.
The run info file is created at the beginning of the run.
[Root folder]
RunInfo.xml
Thumbnail files
A thumbnail image for each channel and tile in each swath at every
cycle during imaging.
Thumbnail_Images\L00[X]\C[X.1]
—Files are stored in 1 folder for
each lane and 1 subfolder for each cycle.
s_[lane]_[tile]_[channel].jpg
—Tile is represented with a 4-digit number
that indicates surface, swath, and tile. See