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NimbleGen MS 200 Microarray Scanner Operator’s Manual v1.0
ILC module
Actuators test................................................................................................................................4
Autofocus test...............................................................................................................................5
Barcode reader test .......................................................................................................................4
Description of the ILC module....................................................................................................4
Detector(s) test .............................................................................................................................5
Electronics test..............................................................................................................................4
Geometry linearity test.................................................................................................................5
Initial ILC test.............................................................................................................................27
Laser(s) test...................................................................................................................................5
Optical alignment test ..................................................................................................................5
Optical resolution test..................................................................................................................5
Oscillator test................................................................................................................................4
Positioning test .............................................................................................................................5
Sensitivity test ...............................................................................................................................5
Setting run parameters...............................................................................................................28
ILC slide
Diagram of the ILC slide............................................................................................................28
Inserting the ILC slide into the slide magazine ........................................................................28
Performing the initial ILC test...................................................................................................27
Proper handling of the ILC slide ...............................................................................................27
Removing the ILC slide from the instrument...........................................................................29
ILC test
Example report ...........................................................................................................................29
How often to perform the ILC test............................................................................................27
Images
Adjusting contrast, brightness, and gamma .............................................................................62
Choosing the channe(s) to display ............................................................................................66
Displaying intensity data for a feature ......................................................................................62
Reviewing Images .......................................................................................................................61
Specifying file naming conventions for images ........................................................................46
Troubleshooting .........................................................................................................................75
Zooming in and out of images ..................................................................................................61
Information labels, rear panel ........................................................................................................vi
Installation, control unit ................................................................................................................21
Installation, instrument
Humidity conditions..................................................................................................................21
Power requirements ...................................................................................................................20
Space requirements ....................................................................................................................19
Temperature conditions ............................................................................................................21
Summary of Contents for Nimblegen MS 200
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