Roche Nimblegen MS 200, Operator'S Manual

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NimbleGen MS 200 Microarray Scanner Operator’s Manual v1.0 | 65
Figure 37: Histogram Generated After the Run
To display a line profile:
Use the line profile command to obtain a cross section of intensity values
along a line drawn in the image. When clicking the
Show Vertical Line
Profile or Show Horizontal Line Profile button, the Line Profile window
opens (Figure 38). A magenta defining-line is placed within your image in
the selected channel mode. Use the mouse to position the defining-line over
the pixels to measure. The line can be drawn to any length by dragging
either endpoint. You can zoom the boundaries of the line profile plot range
by dragging the slider bars in the Line Profile window.
Linear and
Logarithmic Base 10 option buttons allow you to select the scale on the Y
axis for the line profile.
A line profile is not available for 2 μ m scans during the run but is
available post run.