Themis RES-XR4-1U Installation Manual Download Page 45

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1—Overview and Specifications

1-11

Themis Computer

1.4

Block Diagrams

Figure 1-8.

X9DRW Motherboard Block Diagram

a—This represents a general block diagram of the X9DRW board and does not

necessarily depict specific system configurations

PROCESSOR

DDR3 DIMM

CPU Rear

DDR3 DIMM

Socket 00

Socket 01

x16

Right Slot

PCIE 3.0x16

DMI

PE3

PE2

PE1

QPI

CPU Front

DMI

PE1

PE2

PE3

P0PE3

Left Slot

PCIE 3.0x16+x16

x4 (Lane4~7)

UL1

I350AM2

JLAN1

RJ45

JLAN2

RJ45

Lane Reversal & Polarity Inversion

DMI: Lane Reversal

BIOS

SPI Flash

SPI

DMI

PEG [0...3]

PET8 USB [10,11] LPC

SSB

PCH C602/C606

Gen 3 [1...7]

SATA [0...5]

USB [0...9]

SATA Gen3

SATA Gen2

SATA0

SATA1

SATA2

SATA3

SATA4

SATA5

DDR3 RAM

Renesas

VGA

BMC

TPM Chip

Super I/O

W83527 NCT7904D

HW Monitor

VGA

CONN

PHY

RTL8211E

IPMI LAN

RJ45

REAR

HDR 2X5

REAR

3Gbps

6Gbps

JSM2(SCU4~7)

(3F only)

JSM1(SCU0~3)

Summary of Contents for RES-XR4-1U

Page 1: ...User Manual User Manual Installation Manual Installation Manual 1RU 19 Rack Mount Rugged Enterprise Server Supporting X9DRW X9DBU and X9SCi Motherboards RES XR4 1U Version 1 5 Par t Number 119708 024...

Page 2: ...DBU and X9SCi M other board s RES XR4 1U RES XR4 1U Sup por ting X9DRW X9DBU and X9SCi M other board s RES XR4 1U RES XR4 1U Sup por ting X9DRW X9DBU and X9SCi M other board s RES XR4 1U RES XR4 1U Su...

Page 3: ...14 77 80 Fax 33 476 14 77 89 Themis Computer Americas and Pacific Rim 47200 Bayside Parkway Fremont CA 94538 Phone 510 252 0870 Fax 510 490 5529 World Wide Web http www themis com RES XR4 1U Installa...

Page 4: ...uter Inc Intel and Xeon are registered trademarks of Intel Corporation Red Hat is a registered trademark of Red Hat Inc Linux is a registered trademark of Linus Torvalds SuperMicro and SuperDoctor are...

Page 5: ...e 1 4 Corrected table 1 5 to properly correlate I O to correct motherboard Corrected all references to 38 mm fans proper size is 40 mm Added complete BMC section detailing both Renesas and WPCM450R Up...

Page 6: ...d Power Supply Monitoring section in Chapter 1 Version 1 2 October 2013 Updated Specs and DC power supply information and added version 2 CPU information Version 1 1 August 2013 Added all available an...

Page 7: ...ared by a number of other power consumers Do not use an extension cable Only use the mains cable supplied Power cord requirements Europe A power supply unit operating at a nominal voltage of 240V must...

Page 8: ...cases the device must be shut down and secured against unintentional operation Repairs service may only be carried out by a Themis Computer qualified ser vice technician Do not open the chassis or per...

Page 9: ...properly grounded when touching a sensitive board component or assembly 4 Store electrostatic sensitive boards in protective packaging or on conductive foam Grounding Methods Finnish laite on liitett...

Page 10: ...6 AWG 11 Overcurrent Protection relies on proper building installation and Earth connec tion ground 12 High Voltage Earth connection is essential before connecting the power supply units Instructions...

Page 11: ...t must not be disposed of with your other household waste Instead it is your responsibility to dispose of your waste equipment by handing it to a designated collection point for the recycling of elect...

Page 12: ...stolpern k nnen F r den Netzanschluss d rfen keine Verteilerdosen benutzt werden an die noch andere Stromverbraucher angeschlossen sind Verwenden Sie keine Verl ngerungskabel Verwenden Sie nur das mi...

Page 13: ...orizontaler Lage betrieben werden Die Betriebssicherheit des Ger tes ist nicht mehr gew hrleistet wenn das Ger t sichtbare Besch digungen aufweist oder das Ger t nicht mehr funktioniert In diesen F ll...

Page 14: ...t in ihrem Beh lter 3 Achten Sie beim Ber hren empfindlicher Platinen Bauteile oder Baugruppen stets auf eine gute Eigenerdung 4 Lagern Sie elektrostatisch empfindliche Platinen in Schutzverpackungen...

Page 15: ...terlage 9 Die Gr e der Erdungsleitung sollte nicht weniger als 16 AWG betragen 10 berstromschutz ist auf ordnungsgem e Geb udeinstallation und richtigen Erdungsanschluss Masse angewiesen 11 Hochspannu...

Page 16: ...xiv Themis Computer RES XR4 1U Betriebshandbuch Version 1 5...

Page 17: ...2600 Series Processor and C602 C606 Chipset 1 17 1 6 3 C204 Chipset 1 18 1 6 4 Main Features of the E3 1200 Series Processor and C204 Chipset 1 19 1 7 Special Features 1 19 1 7 1 Recovery from AC Powe...

Page 18: ...Packaging and Shipping 1 29 1 9 1 Accessory Kit 1 29 1 10 Rack Mount Slides Optional 1 30 1 11 RES System 1 31 2 Installation and Operation 2 1 2 1 Installation Procedures 2 1 2 1 1 Remove Protective...

Page 19: ...32 2 4 3 1 Configuration 2 32 2 4 3 2 Linux Installation 2 32 2 4 4 Turning the System Off 2 32 3 BIOS Setup Utility 3 1 3 1 Introduction 3 1 3 1 1 Starting BIOS Setup Utility 3 1 3 1 2 How To Change...

Page 20: ...ntel Virtualization Technology 3 9 3 3 4 CPU Power Management Configuration 3 9 3 3 4 1 Power Technology 3 9 3 3 5 Chipset Configuration 3 11 3 3 5 1 NorthBridge Configuration 3 11 3 3 5 2 QPI Quick P...

Page 21: ...21 3 3 11 2 Device Settings 3 21 3 3 11 3 Change Settings 3 21 3 3 11 4 Device Mode 3 21 3 3 11 5 Serial Port 2 Attribute 3 21 3 3 12 Serial Port Console Redirection 3 21 3 3 12 1 Console Redirection...

Page 22: ...unt Increment 3 30 3 4 2 3 METW Multiple Event Count Time Window 3 30 3 4 2 4 View SMBIOS Event Log 3 31 3 4 2 5 View System Event Log 3 31 3 5 IPMI 3 32 3 5 1 System Event Log 3 32 3 5 1 1 Enabling D...

Page 23: ...evice 3 41 3 10 3 Boot Sector Recovery from an IDE CD ROM 3 42 3 10 4 Boot Sector Recovery from a Serial Port Serial Flash 3 42 Appendix A Connector Pinouts A 1 A 1 PS 2 Keyboard and Mouse A 1 A 2 USB...

Page 24: ...3 Stereo Audio Ports Optional D 6 D 2 Ordering the RES Audio USB Serial Port Custom Module D 7 Appendix E Repackaging Instructions E 1 E 1 Repackaging for Shipment E 1 E 2 Packaging Components E 2 E...

Page 25: ...XR4 1U with X9DBU Motherboard 1 14 Figure 1 12 Top View of RES XR4 1U with X9DRW Motherboard 1 15 Figure 1 13 Top View of RES XR4 1U with X9SCi LN4F Motherboard 1 16 Figure 2 1 Remove the RES XR4 1U...

Page 26: ...ention Bracket 2 27 Figure 2 23 The RES XR4 1U Power Cord Retention Bracket 2 28 Figure 2 24 The RES XR4 1U USB Cable Retention Bracket 2 29 Figure 2 25 Right Rack Mount Bracket 2 30 Figure 2 26 AC Po...

Page 27: ...Figure C 10 Setting Up Boot Loader C 10 Figure C 11 Master Boot Record MBR C 11 Figure C 12 Network Devices List C 12 Figure C 13 Edit Interface Pop Up Screen C 13 Figure C 14 Selecting Time Zone C 1...

Page 28: ...Specifications 1 26 Table 1 7 RES XR4 1U Electrical Specifications 1 27 Table 1 8 Approximate Weights of the RES XR4 Series 1 31 Table 2 1 RES XR4 1U Memory Capacity 2 3 Table 2 2 X9DBU 3 iF MB Memor...

Page 29: ...gnal Descriptions A 4 Table A 6 Unit Identifier Switch Status A 5 Table D 1 Dual USB Connector Pinout Signal Descriptions J10 D 4 Table D 2 COM1 Serial Connector Pinout Signal Descriptions J8 and J9 D...

Page 30: ...xxviii Themis Computer RES XR4 1U Installation Manual Version 1 5...

Page 31: ...Themis Rugged Enterprise Server RES XR4 1U see Figure 1 below The RES XR4 1U supports the following motherboards in a 20 deep chassis SuperMicro X9DRW 3F SuperMicro X9DRW iF SuperMicro X9DBU 3F Super...

Page 32: ...ual is intended for an experienced system administrator with a knowledge of both networking and high speed server systems Website Information Themis Computer corporate and product information may be a...

Page 33: ...e the risk follow the instructions accompanying this symbol Warning A warning describes a procedure or action that may cause injury or death to the operator as a result of hazardous voltages To reduce...

Page 34: ...RES XR4 1U Installation Manual Version 1 5 xxxii Themis Computer...

Page 35: ...ed in Table 1 2 on page 1 3 and includes multiple GBs of 1866 1600 1333 1066 800 MHz DDR3 ECC Registered memory modules Its computer graphics intensive and diverse I O capabilities are ideal for milit...

Page 36: ...T s each One Intel Xeon E3 1200 V2 Chipset Intel 602 SATA Intel 606 SAS Intel 602 SATA Intel 606 SAS Intel C204 PCH Memory Slots Sixteen 16 supporting up to 1TB Twelve 12 supporting up to 384GB Four 4...

Page 37: ...quirements should be ordered at the time of purchase Also included on the front panel is a combination CD RW DVD ROM Slimline drive an ON OFF Table 1 2 RES XR4 1U Motherboard Specifications Motherboar...

Page 38: ...Slot Lower Right PCI Slot Right Riser Right Riser as viewed from rear of system AC Power Socket 3 prong NEMA 15 Dual Power Supplies Power Supply Latch Lock Rear I O Panel see Figure 1 6 page 1 11 20...

Page 39: ...are located on the front panel LEDs are described in Table 1 3 Power supply LED behavior is described by Table 1 4 on page 1 7 Figure 1 4 Front Panel LEDs and Indicators LEDs NIC1 NIC2 Storage Drives...

Page 40: ...imits are ex ceeded Warns that the system is exceeding specified temperature parameters The CPU overheat warning function must be enabled in the BIOS thus allowing the user to define an overheat tempe...

Page 41: ...to the AC power Or On red LED Power Fail LED Left or Right Power Supply a Note system is powered off AC power has been inter rupted to both power supply modules When power is re stored but system is s...

Page 42: ...escribes the I O connectors Figure 1 5 Rear Panel I O for X9DRW Motherboard Left Power Supply PS1 Right Power Supply PS2 Lower Right Side Rear Panel Rear I O Panel USB 1 top USB 0 bottom USB 3 top USB...

Page 43: ...e LAN 1 LAN 2 Gigabit Ethernet UID Switch is Not Used PCI Expansion Card Upper Right Side PCI Expansion Card Left Side Slot Figure 1 7 Rear Panel I O for X9SCi LN4F Motherboard Left Power Supply PS1 R...

Page 44: ...COM1 VGA Graphics Con nector One 17 pin VGA connector to provide a video display Ethernet LAN Ports Standard RJ45 connectors for gigabit Ethernet LAN line s LAN 1 and LAN 2 plus LAN3 and LAN4 on X9SCi...

Page 45: ...cket 01 1 2 1 2 1 2 1 2 1 2 1 2 P0 P0 P1 P1 x1 x16 x16 x16 J1 Right Slot PCIE 3 0x16 DMI PE3 PE2 PE1 QPI QPI CPU Front DMI PE1 PE2 PE3 P0PE3 J3 Left Slot PCIE 3 0x16 x16 x4 Lane4 7 UL1 I350AM2 JLAN1 R...

Page 46: ...DMI 4GB s PCI E X4 G3 2 5 0 1 SPI SAS I PASS SAS MUX COM1 External COM2 Header MUX BMC WPCM450 RJ45 I PASS GLAN I350 AM2 PCH SSB A D PCI E X8 G3 PCI E X8 G3 PCI E X8 G3 PCI E X8 G3 PCI E X4 G3 CPU2 D...

Page 47: ...II 300MB s 8 USB 2 0 ports PCI E x1 2 5 Gbps PCI E x1 2 5 Gbps PCI E x1 2 5 Gbps PCI E x1 2 5 Gbps 2 SATA III ports DDR3 800 1066 1333 1600 DDR3 800 1066 1333 1600 A 1 B 1 CPU Sandy Bridge DDR3 DMI P...

Page 48: ...S XR4 1U with X9DBU Motherboard Air Diverter Removed Front CD DVD Combo Drive Housing 40 mm Fan AC Power Supply AC Power Supply Five Total Right Riser Card CPU 2 CPU 1 6 DIMM Memory Modules CPU 2 6 DI...

Page 49: ...Re moved Front CD DVD Combo Drive Housing 40 mm Fan AC Power Supply AC Power Supply Five Total Right Riser Card CPU 2 CPU 1 4 DIMM Memory Modules CPU 1 4 DIMM Memory Modules CPU 2 PCI Express Card Upp...

Page 50: ...iew of RES XR4 1U with X9SCi LN4F Motherboard Air Diverter Removed Front CD DVD Combo Drive Housing 40 mm Fan AC Power Supply AC Power Supply Five Total Riser Card Slot CPU PCI Express Card Upper Righ...

Page 51: ...terface with CPU to CPU transfer speeds of up to 8 0 GT s providing fast speeds and excellent system performance The Intel E5 2600 CPU has two QPI links and the Intel E5 2400 CPU has one QPI link The...

Page 52: ...ace DMI 1 6 3 C204 Chipset The X9SCi LN4F motherboard supports a single Intel Xeon E3 1200 V2 series 2nd and 3rd generation Intel Core i3 Pentium and Celeron processor in an LGA 1155 socket Built upon...

Page 53: ...is lost to remain off power switch must be pressed to turn system back on or return to a power on state automatically when power is restored This setting can be accessed in the Advanced section of the...

Page 54: ...ssis thermal circuitry can monitor overall system tem perature and alert users when chassis temperature exceeds a user defined threshold 1 7 2 3 System Resource Alert Available only through SuperDocto...

Page 55: ...CR10 D1 then the 3 3V voltage 0 008 D1 2 3 34V If CR11 68 then the 5V voltage 0 008 68 6 4 99V If CR12 89 then the monitor 12V voltage 0 008 89 11 12 05V 4 PG Status Monitor The value can be obtained...

Page 56: ...08 Operating Systems 1 7 5 Slow Blinking LED for Suspend State Indicator When the CPU enters a suspend state the Power LED will start blinking to indicate that the CPU is in suspend mode Pressing any...

Page 57: ...ovides a video data compressor for Keyboard Video Mouse KVM support if keyboard mouse are installed in the system With two Ethernet controllers built in the BMC controller supports USB media hosting a...

Page 58: ...o 220 MHz For best signal integrity the WPCM provides point to point connection 1 7 8 2 WPCM450R PCI System Interface The WPCM450R provides 32 bit 33 MHz 3 3V PCI interface which is compliant with the...

Page 59: ...iew and Specifications Special Features Interface RMCP protocol supported Note For more information regarding IPMI configuration refer to the IPMI Us er s guide on SuperMicro s website at http www sup...

Page 60: ...this manual 0 C to 50 C 32 F up to 122 F 40 C to 70 C 40 F to 158 F Relative Humiditya Operating Non Operating 8 to 90 non condensing 5 to 95 non condensing Shocka Operating Non Operating 3 axis 25 g...

Page 61: ...stem Table 1 7 RES XR4 1U Electrical Specifications Parameter Description AC 120 volts 750W DC 48 volts 750W DC 28 volts 500W Input Power typical 420 watts typical a 420 watts typical a 450 watts typi...

Page 62: ...t between 3 3V 5V 5Vsb 12V and 12V rails 1 8 3 Environmental 1 8 3 1 Shock The RES XR4 1U is designed to survive an elevated shock environment All struc tural components are welded together enabling t...

Page 63: ...with an Accessory Kit consisting of the following items A A Power cord Retainer Bracket B Two AC Power Cords C Two Front Bezel Barrel Keys D Any applicable paperwork When you unpack the RES XR4 1U pl...

Page 64: ...onal Rack Mount Slides can be mounted on each side of the RES XR4 1U for the pur pose of sliding the unit in and out of a rack Mounting slides are optional and can be ordered at the time of purchase T...

Page 65: ...ower supplies 17 lbs 7 7 kg 2 17 RES XR4 2U 25 lbs 11 4 kg 2 20 Includes All CPU sockets filled 6 DIMMs 2 storage drives 2 PCI cards 1 CD RW DVD ROM drive 2 power supplies 23 lbs 10 4 kg 2 17 RES XR4...

Page 66: ...l DIMM slots filled Two PCI E Storage Canisters Four PCI E flash based storage cards Total of eight PCI E storage cards per system RES XR4 1U 1U 23 72 lbs 10 76 2 24 Includes All CPU sockets filled 8...

Page 67: ...1 33 Themis Computer 1 Overview and Specifications RES System...

Page 68: ...1 34 Themis Computer RES XR4 1U Installation Manual Version 1 5...

Page 69: ...roceed directly to page 2 17 or page 2 20 respectively Replacement of mother board components requires removal of the protective cover 2 1 1 Remove Protective Top Cover To access interior components o...

Page 70: ...re 2 1 Remove the cover by sliding it toward the rear until it is free of these chassis slots 3 Store the cover in a safe place until it is replaced 4 Proceed to the appropriate section to install or...

Page 71: ...varies according to the motherboard installed in the RES XR4 1U Memory location is as depicted in Figures 2 2 and 2 3 Table 2 1 RES XR4 1U Memory Capacity Motherboard Memory Parameters Capacity DDR3...

Page 72: ...1 DIMMB2 P1 DIMMC1 P1 DIMMC2 P1 DIMMD1 P1 DIMMD2 CPU 2 P2 DIMME1 P2 DIMME2 P2 DIMMF1 P2 DIMMF2 P2 DIMMG1 P2 DIMMG2 P2 DIMMH1 P2 DIMMH2 Table 2 4 X9SCi LN4F MB Memory Population CPU X9DBU Motherboard C...

Page 73: ...1 a C1 a D1 a 2 CPUs 4 DIMMs A1 B1 E1 F1 2 CPUs 6 DIMMs A1 B1 C1 D1 E1 F1 2 CPUs 8 DIMMs A1 B1 C1 D1 E1 F1 G1 H1 2 CPUs 10 16 DIMMs A1 b B1 b C1 b D1 b E1 b F1 b G1 b H1 b a Any additional pairs in A2...

Page 74: ...Manual Version 1 5 2 1 2 1 Memory Module Location Figure 2 2 Memory Module Slot Locations X9DBU 3 iF Motherboard P2 DIMM D1 P2 DIMM D2 P2 DIMM E1 P2 DIMM E2 P2 DIMM F1 P2 DIMM F2 P1 DIMM A1 P1 DIMM A2...

Page 75: ...ation Procedures Figure 2 3 Memory Module Slot Locations X9DRW 3 iF Motherboard P2 DIMM D1 P2 DIMM D2 P2 DIMM H2 P2 DIMM H1 P2 DIMM G2 P2 DIMM G1 P1 DIMM A1 P1 DIMM A2 P1 DIMM B1 P1 DIMM B2 P1 DIMM C1...

Page 76: ...2 8 Themis Computer RES XR4 1U Installation Manual Version 1 5 Figure 2 4 Memory Module Slot Locations X9SCi LN4F Motherboard Channel 2 Slot 2B Channel 2 Slot 2A Channel 1 Slot 1B Channel 1 Slot 1A...

Page 77: ...stallation Procedures 2 1 2 2 Installation The following procedure explains how to install the DDR3 FBD Memory Modules 1 Loosen and remove the seven screws securing the air flow deflector see Fig ure...

Page 78: ...inserting a new memory module into the vacant slot make sure that the two latches are pulled outward away from the center of the slot With the latches in the outward position gently insert the new mo...

Page 79: ...shorter cards PCI Riser Cards that are installed on the mother board depend on the type of PCI card that will be supported Figure 2 7 Positioning of the RES XR4 1U PCI UIO Riser Cards PCI Riser Card...

Page 80: ...on page 2 11 within which a card will be installed and remove the Phillips screw or tape holding the blank I O faceplate corresponding to the slot see Figure 2 10 Figure 2 8 PCI Riser Cards attached...

Page 81: ...d a pair of threaded standoffs to secure the card installed in the lower right PCI expansion slot to the motherboard Remove the standoff screws install the PCI card into the lower right slot and secur...

Page 82: ...y fold and tuck any exposed ribbon cables into the cabinet 5 If you have no further installations to perform close the RES XR4 1U chassis by refastening the top cover removed in Step 1 on page 2 2 6 A...

Page 83: ...see Operation on page 2 31 2 If you cannot access the lithium battery directly you must move and or detach the multiple wire cable routed over the battery 3 Locate the lithium battery socket and sque...

Page 84: ...battery 1 Tilt the replacement battery into the empty socket so that it is angled under the battery latch see B Figure 2 13 2 Carefully press down on the battery until it clicks firmly into place Fig...

Page 85: ...the front doors see Fig ure 2 14 page 2 17 The knurled captive screw on the front of the RES XR4 1U allows the doors to lock without a key To unlock the front doors turn the screw counterclockwise and...

Page 86: ...le releases from the drive 5 Grab the latch handle and pull the drive completely away from its slot Figure 2 15 Unlocking the RES XR4 1U Storage Drives Front Doors Removed Drive Lock one per drive Dri...

Page 87: ...A push the latch lock B Latch Lock Latch Handle and pull drive out with the latch handle C 45 degrees clockwise Barrel Key Remove the four screws securing D Place the four screws in a plastic E Drive...

Page 88: ...teps 1 4 for each additional drive 2 1 6 Cooling Fans The RES XR4 1U contains six high speed 40 mm cooling fans Each fan is an inte gral part of the entire fan assembly therefore if any fan needs to b...

Page 89: ...iring header from each fan 5 Remove the fan assembly 6 To replace the fan assembly align the mounting holes in the fan assembly with the mounting holes on the chassis 7 Insert and tighten the mounting...

Page 90: ...oad sharing N 1 redundant power supply can be hot swapped while the sys tem is still on and operational 2 2 1 DC Power Supply Option The optional DC power supplies are available in 28VDC and 48VDC The...

Page 91: ...e wrap securing it to the Power Cord Retention Bracket see A Figure 2 18 2 Loosen the two captive screws holding the Power Cord Retention Bracket to the chassis see B Figure 2 19 on page 2 24 Figure 2...

Page 92: ...stallation Manual Version 1 5 3 Place the Bracket in a safe place for future use Figure 2 19 Remove the Power Cord Retention Bracket Remove Power Cord Retention Bracket Place Bracket in a safe place f...

Page 93: ...e 2 20 Important Do not remove the ground wire Kep Nuts or grounding screw Figure 2 20 The RES XR4 1U Rear Grounding Screw and Kep Nut 10 32 Grounding Screw Single Hex Kep Nut Single Kep Nut top and b...

Page 94: ...21 2 Push the power supply carefully into its slot until it is firmly seated a click will be heard when the locking lever is securely fastened to the chassis 3 Re install a Power Cord Retention Bracke...

Page 95: ...R4 1U chassis with its two captive screws see Figure 2 22 Note Your RES XR4 1U is shipped with a Power Cord Retention Bracket in stalled see Figure 2 22 If it has been removed follow the steps of this...

Page 96: ...secure it with a tie wrap see B Figure 2 23 Repeat Step 2 to install a second AC power cord see C Figure 2 23 Figure 2 23 The RES XR4 1U Power Cord Retention Bracket Plug in one of the AC power cords...

Page 97: ...through one of the tie down bars of the USB Cable Retention Bracket see Figure 2 24 3 If necessary attach a second USB cable to a USB port on either side of the Retention Bracket and secure it with a...

Page 98: ...2 Rack Mount Slides Optional Rack Mount Slides can be mounted on each side of the RES XR4 1U for the pur pose of sliding the unit in and out of a rack Mounting slides are optional and should be ordere...

Page 99: ...urning the System On 1 Plug the AC power cord from each of the RES XR4 1U power supplies into a live AC outlet 2 On the front of the RES XR4 1U push the system power on off button see Figure 2 27 This...

Page 100: ...he system on see previous section 2 4 3 2 Linux Installation The subject of installing the Linux operating system onto the RES XR4 1U is detailed in Appendix C Red Hat Enterprise Linux 5 Installation...

Page 101: ...MI BIOS Setup Utility screens press the Delete key while the sys tem is booting up Note The information on this chapter is based on the Super Micro Computer Inc User Manuals for the specific motherboa...

Page 102: ...ing the AMI BIOS Setup utility This Setup utility can be accessed by pressing Del at the appropriate time during system boot 3 1 3 Starting the Setup Utility Normally the only visible Power On Self Te...

Page 103: ...the screen The Main BIOS Setup screen is shown in Figure 3 1 3 2 1 System Overview The following BIOS information will be displayed 3 2 1 1 System Time System Date Employ this option to alter the syst...

Page 104: ...in your system CPU Type This item displays the type of CPU used in the motherboard Speed This item displays the speed of the CPU detected by the BIOS Physical Count This item displays the number of p...

Page 105: ...messages Select Enabled to display the OEM logo instead of the normal POST messages The options are Enabled default and Disabled 3 3 1 2 AddOn ROM Display Mode This sets the display mode for Option RO...

Page 106: ...bootable devices The options are Enabled default and Disabled 3 3 2 Power Configuration 3 3 2 1 Watch Dog Function If enabled the Watch Dog Timer will allow the system to reboot when it is inactive f...

Page 107: ...the speed of the CPU installed in Socket 1 Socket 2 3 3 3 3 Clock Spread Spectrum Select Enable to use the feature of Clock Spectrum support which will allow the BIOS to monitor and attempt to reduce...

Page 108: ...dvanced Encryption Standard AES New Instruc tions NI to ensure data security The options are Enabled default and Disabled 3 3 3 9 Hardware Prefetcher Available when supported by the CPU If set to Enab...

Page 109: ...omize system power settings Select Disabled to disable power saving settings The options are Disabled Energy Efficient and Custom If the option is set to Custom the fol lowing items will display EIST...

Page 110: ...wer Technology is set to Custom Select Enabled to allow the BIOS to report the CPU C6 State ACPI C3 to the oper ating system During the CPU C6 State the power to all cache is turned off The options ar...

Page 111: ...turer Short Duration Power Limit This item displays the time period during which short duration power is maintained 3 3 5 Chipset Configuration 3 3 5 1 NorthBridge Configuration Intel VT d Select Enab...

Page 112: ...x4x4 x4x4x8 x8x4x4 x8x8 x16 and Auto IIO 3 PCIe Port This item configures IOU3 PCIe Port settings The options are x4x4x4x4 x4x4x8 x8x4x4 x8x8 x16 and Auto 3 3 5 2 QPI Quick Path Interconnect Configura...

Page 113: ...rboard Memory mirroring creates a duplicate copy of the data stored in the memory to enhance data security Sparing This item displays if memory sparing is supported by the motherboard Memory sparing e...

Page 114: ...annel interleaving methods The options are Auto 1 Way 2 Way 3 Way and 4 Way Rank Interleaving This feature allows the user to select a rank memory interleaving method The options are Auto 1 Way 2 Way...

Page 115: ...ttling 3 3 5 5 SouthBridge Configuration This feature allows the user to configure the settings for the Intel PCH chip PCH Information This feature displays the following PCH information Name This ite...

Page 116: ...EHCI hand off When enabled EHCI ownership change will be claimed by the EHCI driver The options are Disabled and Enabled 3 3 6 SATA Configuration When this submenu is selected the AMI BIOS automatica...

Page 117: ...ed Port 0 5 Hot Plug Select Enabled to enable hot plug support for a particular port which will allow the user to change a hardware component or device without shutting down the system The options are...

Page 118: ...OM and Legacy ROM 3 3 8 2 PCI Latency Timer Use this feature to set the latency Timer of each PCI device installed on a PCI bus Select 64 to set the PCI latency to 64 PCI clock cycles The options are...

Page 119: ...the Active State Power Management ASPM level for a PCI E device Select Force L0 to force all PCI E links to operate at L0 state Select Auto to allow the system BIOS to automatically set the ASPM leve...

Page 120: ...for network stack support The options are Enabled and Disabled 3 3 9 Super IO Configuration Super IO Chip This item displays the Super IO chip used in the motherboard 3 3 10 Serial Port 1 Configuratio...

Page 121: ...Port 2 are Auto IO 2F8h IRQ 3 IO 3F8h IRQ 3 4 5 6 7 9 10 11 12 IO 2F8h IRQ 3 4 5 6 7 9 10 11 12 IO 3E8h IRQ 3 4 5 6 7 9 10 11 12 and IO 2E8h IRQ 3 4 5 6 7 9 10 11 12 3 3 11 4 Device Mode Use this feat...

Page 122: ...t computer and the client computer A lower transmission speed may be required for long and busy lines The options are 9600 19200 57600 and 115200 bits per second Data Bits Use this feature to set the...

Page 123: ...r The options are Disabled and Enabled Resolution 100x31 Select Enabled for extended terminal resolution support The options are Disabled and Enabled Legacy OS Redirection Use this feature to select t...

Page 124: ...s Per Second This item sets the transmission speed for a serial port used in Console Redirection Make sure that the same speed is used in the host computer and the client computer A lower transmission...

Page 125: ...at a much higher frequency than a Real time Clock RTC does in synchronizing multimedia streams providing smooth playback reducing the depen dency on other timestamp calculation devices such as an x86...

Page 126: ...em displays the status of TPM Ownership 3 3 16 Intel TXT LT SX Configuration 3 3 16 1 Intel TXT LT SX Hardware Support This feature indicates if the following hardware components support the Intel Tru...

Page 127: ...ME Subsystem This feature displays the following Intel ME Subsystem Configuration settings ME BIOS Interface Version ME Version 3 3 18 iSCSI Configuration This item displays iSCSI configuration infor...

Page 128: ...stem with a device a magic packet The options are Disabled and Enabled 3 3 19 3 Blink LEDs Range 0 15 seconds This item sets the duration of blinking for NIC LEDs The range of duration is from 0 secon...

Page 129: ...the user to configure SMBIOS Event settings 3 4 1 1 Enabling Disabling Options SMBIOS Event Log Select Enabled to enable SMBIOS System Management BIOS Event Logging dur ing system boot The options are...

Page 130: ...elect Erase Immediately to immediately erase SMBIOS error event logs that exceed the limit when the SMBIOS event log is full Select Do Nothing for the sys tem to do nothing when the SMBIOS event log i...

Page 131: ...event log Select this item and press Enter to view the status of an event in the log as shown below Date Time Error Code Severity 3 4 2 5 View System Event Log This item allows the user to view the e...

Page 132: ...rmware Revision This item indicates the IPMI firmware revision used in your system IPMI Status This item indicates the status of the IPMI firmware installed in your system 3 5 1 System Event Log 3 5 1...

Page 133: ...tem event log is full The options are Do Nothing and Erase Immediately 3 5 1 3 Custom EFI Logging Options Log EFI Status Codes Select Enabled to log EFI Extensible Firmware Interface Status Codes Erro...

Page 134: ...tatic The following items are assigned IP addresses automatically if DHCP is selected or can be configured manually if Static is selected Station IP Address This item displays the Station IP address f...

Page 135: ...compatibility support for traditional legacy BIOS for system boot The options are Enabled Disabled and Auto 3 6 2 Boot Option Priorities 3 6 2 1 Boot Option 1 Boot Option 4 This item allows the user...

Page 136: ...s the first boot device 3 6 4 Delete Boot Options This feature allows the user to select a boot device to delete from the boot priority list 3 6 4 1 Delete Boot Option This item allows the user to sel...

Page 137: ...the Administrator Password which is required to enter the BIOS setup utility The length of the password should be from 3 characters to 20 characters long 3 7 2 User Password Use this feature to set a...

Page 138: ...f you want to exit the BIOS setup without saving select Yes to quit BIOS without saving the changes or select No to quit the BIOS and save changes 3 8 2 Save Changes and Reset When you have completed...

Page 139: ...x appears asking you if you want to load optimized defaults select Yes to load the optimized default settings or select No to abandon optimized defaults 3 8 3 4 Save as User Defaults Select this featu...

Page 140: ...re usually communicated through a series of audible beeps The table below describes the number of beeps with the corresponding error state Table 3 1 BIOS Error Beep Codes Beep Code LED Error Message D...

Page 141: ...or the recovery process to load the file A USB flash device such as a USB Flash Drive a USB CDROM or a USB CDRW device can be used for this purpose 1 Insert the USB device that contains the new BIOS i...

Page 142: ...the user to use a serial port to load a BIOS image for Boot Sector recovery This feature is usually used for embedded systems that rely on a serial port for remote access and debugging Requirements In...

Page 143: ...the instructions given on the screen to update the BIOS These instructions are also shown below a At the prompt press the SpaceBar to update the BIOS b When asked to confirm BIOS updating press y to...

Page 144: ...1 5 a Select the Transfer menu and enter Send see Figure 3 1 b Specify the location of the ROM file and select the proper protocol XMo dem c Press Send to start ROM File extraction see Figure 3 2 Figu...

Page 145: ...flash is completed the system will reboot Figure 3 3 FLASH Recovery Note AMBIOS Serial Flash will work with any terminal communications pro gram that supports VT 100 and XModem protocols including pr...

Page 146: ...3 46 Themis Computer RES XR4 1U Installation Manual Version 1 5...

Page 147: ...ey board and another for the PS 2 mouse Pinouts and signal definitions for both con nectors are defined in Table A 1 Note For all special configuration I O add ons please refer to the manufacturer s o...

Page 148: ...ts The RES XR4 1U supports one male DB9 serial port connector on the rear I O panel see Figure A 2 TTYA COM 1 Another serial port TTYB COM 2 is accessed from the motherboard COM 1 signal definitions a...

Page 149: ...ddition an IPMI dedicated LAN port is located above on the rear I O panel above the two USB ports Figure A 3 Ethernet Connector Type RJ45 Table A 4 RJ45 Ethernet Pinout Signals Pin Signal Name Pin Sig...

Page 150: ...5 Figure A 4 VGA Connector Pinout Table A 5 VGA Connector Pinout Signal Descriptions Pin Signal Description 1 RED Red video 2 GREEN Green video 3 BLUE Blue video 4 MS2 Monitor ID bit 2 5 GROUND Ground...

Page 151: ...see Figure 1 6 page 1 9 The rear UID LED is located next to the UID Switch When you press the UID Switch the UID LED indicator will turn on Press the UID Switch again to turn of the UID LED Note UID...

Page 152: ...A 6 Themis Computer RES XR4 1U Installation Manual Version 1 5...

Page 153: ...t ing holes and aluminum slides require three mounting holes see Figure B 1 Dimensions of the screw hole patterns on the sides of the RES XR4 1U chassis for installing rack mount slides are shown in F...

Page 154: ...e slide section using the M4x10mm screws wash ers and nuts provided with the slide kit 4 With all slide brackets securely attached to both the right and left outside slide sections install both sectio...

Page 155: ...e rear long slide bracket to the outside slide section with screws M4x10mm washers and nuts included Attach both inside slide sections to the left and right sides of the RES XR4 1U chassis with M4x6mm...

Page 156: ...Themis Computer RES XR4 1U Installation Manual Version 1 5 B 4...

Page 157: ...during the installation of Red Hat Enterprise Linux via DVD device From fundamental concepts such as installation preparation to the step by step installation procedure C 2 Installation Step 1 Insert...

Page 158: ...n Manual Version 1 5 C 2 Themis Computer Step 2 Press the tab key to move focus to the Skip key then press Enter key to Continue see Figure C 2 Figure C 1 Power On after Linux DVD is Inserted into Dri...

Page 159: ...n see Figure C 3 Click on the Next button to continue Step 4 Using your mouse select a language to use for the installation The lan guage you select here will become the default language for the opera...

Page 160: ...ect the appropriate language click Next to continue Step 5 Using your mouse select the correct layout type for example U S English for the keyboard you would prefer to use for the installation and as...

Page 161: ...xt to continue Step 6 Enter the installation number if you don t have an installation number select the Skip Entering Installation Number Radio Button Click OK and if you did not enter an installation...

Page 162: ...ion using the Create custom layout option of Disk Druid The first three options allow you to perform an automated installation without hav ing to partition your drive s yourself If you do not feel com...

Page 163: ...and create default layout select this option to remove only Linux partitions partitions created from a previous Linux installation This does not remove other partitions you may have on your storage d...

Page 164: ...ve made your selections to proceed Step 9 If you chose one of the automatic partitioning options and selected Review you can either accept the current partition settings click Next or modify the setup...

Page 165: ...partitions set up a boot loader If you select No Boot Loader will be Installed you ll need to use a third party boot loader such as Partition Magic or Microsoft s TLDR Unless you want to set up a Boot...

Page 166: ...o places The master boot record MBR This is the recommended place to install a boot loader unless the MBR already starts another operating system loader such as System Commander The MBR is a special a...

Page 167: ...at boot loader to start GRUB which then boots Red Hat Enterprise Linux If your system only uses Red Hat Enterprise Linux you should choose the MBR Click the Change Drive Order button if you would like...

Page 168: ...t Inter face pop up screen you can choose to configure the IP address and Netmask for IPv4 Prefix for IPv6 of the device via DHCP or manually if DHCP is not selected and you can choose to activate the...

Page 169: ...of the world see Figure C 14 on page C 14 From here there are two ways for you to select your time zone Using your mouse click on the interactive map to select a specific city repre sented by a yellow...

Page 170: ...portant steps during your installation Your root account is similar to the administrator account used on Windows NT machines The root account is used to install packages upgrade RPMs and perform most...

Page 171: ...t for your Red Hat Enterprise Linux installation This screen varies depending on the version of Red Hat Enterprise Linux you are installing see Figure C 16 on page C 16 To customize your package set f...

Page 172: ...stall Once a package group has been selected if optional components are available you can click on Optional packages to view which packages are installed by default and to add or remove optional packa...

Page 173: ...Next Step 18 Once you have selected the package groups of your choice you get one last chance to go back before starting the installation process Click Next if you re happy with your choices or click...

Page 174: ...RES XR4 1U Installation Manual Version 1 5 C 18 Themis Computer Click Next Step 19 Installation Starts see Figure C 19 Figure C 18 Option to Review or Continue Figure C 19 Installation Begins...

Page 175: ...up sequence has completed the graphical boot loader prompt appears at which you can do any of the following things Press Enter causes the default boot entry to be booted Select a boot label followed b...

Page 176: ...ntually a login prompt or a GUI login screen if you installed the X Window System and chose to start X automatically appears see Figure C 21 Step 22 Once logged in you are ready to use the desktop see...

Page 177: ...port capabilities to the front of any RES system can easily order an optional RES Audio USB Serial Port Custom Module see Figure D 1 that is installed at the Themis factory into an available stor age...

Page 178: ...gh the Module may be installed into any RES system Figure D 3 on page D 3 shows the internal connections that are made between the RES Custom Module and the RES motherboard Caution Because connections...

Page 179: ...igure D 3 Attach the Appropriate I O Cables DB9 Serial Port Attach the appropriate I O Cables from the USB Ports A and B Port A Port B Stereo Audio Out Jack Optional RES Custom Module J8 J2 J10 To RES...

Page 180: ...t Custom Module supports two USB Universal Serial Bus port connectors see Figure D 4 for pinouts USB A and USB B on the front I O panel USB pinout descriptions are listed in Figure D 4 pinout signal d...

Page 181: ...e D 5 pinout signal descriptions are described in Table D 2 which also shows the serial header J8 connections to serial port J9 Figure D 5 COM1 Serial Connector Pinout J9 Serial Port COM1 J8 1 2 3 4 5...

Page 182: ...io Connector Pinout J3 Stereo Audio Out Jack J2 Line Out Header J1 1 3 5 7 9 J4 1 2 3 4 Line In Header USB to Audio Chip Header 5 1 2 4 3 No Connection Left Line Out Right Line Out Line In Left Line I...

Page 183: ...D 2 Ordering the RES Audio USB Serial Port Custom Module Because internal modifications must be made to the RES chassis in order to support the RES Audio USB Serial Port Custom Module the Custom Modu...

Page 184: ...D 8 Themis Computer RES XR4 1U Installation Manual Version 1 5...

Page 185: ...uring delivery Failure to use original packaging materials exactly as described in this appendix may invalidate the warranty If the original packaging is no longer serviceable or no longer available p...

Page 186: ...omprise a packaging box bottom foam layer and two top foam layers The two top foam layers are identical components placed so that the rear most edge and front most edge touch the inner wall of the bot...

Page 187: ...rs two the rear and front of the RES XR4 1U This will leave a small horizontal gap in which accessories can be placed 5 Make sure all components of the box are firmly in place pressing down on the sur...

Page 188: ...E 4 Themis Computer RES XR4 1U Installation Manual Version 1 5 The order of assembly when repackaging the RES XR4 1U for shipment as shown in Figure E 2 Figure E 2 Order of Assembly...

Page 189: ...For F1 If Error 3 6 Chipset Configuration 3 11 DIMM Configuration 3 13 Current Memory Mode 3 13 Current Memory Speed 3 13 Mirroring 3 13 Sparing 3 13 DIMM Information 3 13 Channel Interleaving 3 14 CP...

Page 190: ...et to Custom 3 10 CPU C6Report Available when Power Technology is set to Custom 3 10 CPU C7 Report Available when Power Technology is set to Custom 3 10 EIST Technology Available when Power Technology...

Page 191: ...20 Serial Port 2 Configuration 3 21 Change Settings 3 21 Device Mode 3 21 Device Settings 3 21 Serial Port 3 21 Serial Port 2 Attribute 3 21 Serial Port Console Redirection 3 21 Bits Per Second 3 22 C...

Page 192: ...ation Address Source 3 34 Gateway IP Address 3 34 Station IP Address 3 34 Station MAC Address 3 34 Subnet Mask 3 34 Update IPMI LAN Configuration 3 33 IPMI Firmware Revision 3 32 IPMI Status 3 32 Syst...

Page 193: ...Ethernet LAN Port 1 10 IPMI 1 10 PS 2 keyboard 1 10 PS 2 mouse 1 10 Serial Ports 1 10 USB Serial Ports 1 10 VGA Connector 1 10 Installation 2 9 Installation procedures 2 1 installing rack mount slides...

Page 194: ...Supply Module PSM LED Off 1 7 PSM LED On 1 7 Power Supply Monitoring 1 21 I2C Notes 1 21 Sample I2C Commands 1 22 Processor and Chipset Overview 1 17 C204 Chipset 1 18 C602 C606 Chipset 1 17 Main Feat...

Page 195: ...6 System Power 1 27 Temperature 1 26 Vibration 1 26 Weight 1 26 Stereo Audio Ports D 6 Storage Drive Installation 2 20 Storage Drive Removal 2 18 Super I O 1 23 system LEDs NIC Gb Ethernet 1 6 Overhea...

Page 196: ...RES XR4 1U Installation Manual Version 1 5 8 Themis Computer...

Page 197: ...ThemisComputer 47200BaysideParkway Fremont CA94538 Attn PublicationsDepartment Place Stamp Here Fold here tape at top to seal...

Page 198: ..._____________________________ ___________________________________________________________ ___________________________________________________________ __________________________________________________...

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