8
Troubleshooting
Investigating Baseline Issues
108
ISQ User Guide
Thermo Scientific
Investigating Baseline Issues
Table 2.
Troubleshooting Baseline Issues in Your Data (Sheet 1 of 2)
Behavior
Characteristic
Cause
Remedy
Drifting Baseline
General
Stationary phase has
accumulated in column
Replace the column or cut off the end of
the column.
Chromatographic baseline
is high
Replace the column or cut off the end of
the column.
Carrier gas pressure is too
low
Check for leaks in injector or flow path.
Replace the carrier gas cylinder if it is
empty or low. Increase the pressure if
maximum injector pressure in method is
greater than carrier line pressure set by
regulator. Make sure the vacuum
compensation is on.
Carrier gas flow is drifting
Check for leaks in injector or flow path.
Check the carrier gas tank.
Impurities have
accumulated in column
Run solvent blank to remove impieties.
If impurities persistent after multiple
solvent blanks: Inject solvent from a
different source. Change syringe, liner
and septum. Clean injector. Check
impurity levels in your gas. Use the
correct gas purity and filter.
Falling
Carrier gas leak in the
system
Perform a leak test and tighten the
connections to the carrier gas line if leak
is found.
Column is baking out
Wait for the column to stabilize.
Rising
Impurities have
accumulated in column
Check impurity levels in the gas source.
Use correct gas purity.
Abnormal rise in
baseline when oven
temperature is high
Impurities have
accumulated in column
Recondition or replace the column.
Summary of Contents for ISQ
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