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Supero SuperWorkstation 5035B-T, User Manual

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Appendix D: Software Installation

D-3

Supero Doctor III Interface Display Screen-II  (Remote Control)

Note

: SD III Software Revision 1.0 can be downloaded from our Web site at: ftp://

ftp.supermicro.com/utility/Supero_Doctor_III/.  You can also download SDIII User's 

Guide at: http://www.supermicro.com/PRODUCT/Manuals/SDIII/UserGuide.pdf. For 

Linux, we will still recommend that you use Supero Doctor II.

Summary of Contents for SuperWorkstation 5035B-T

Page 1: ...SUPER SuperWorkstation 5035B T USER S MANUAL Revision 1 0a...

Page 2: ...OR DATA STORED OR USED WITH THE PRODUCT INCLUDING THE COSTS OF REPAIRING REPLACING INTEGRATING INSTALLING OR RECOVERING SUCH HARDWARE SOFTWARE OR DATA Any disputes arising between manufacturer and cus...

Page 3: ...main components included with the system and describes the main features of the Super C2SBX serverboard and the SC733TQ 465 chassis Chapter 2 Installation This chapter describes the steps necessary t...

Page 4: ...up Refer to Chapter 6 for detailed information on the SC733TQ 465 mid tower chassis You should follow the procedures given in this chapter when installing removing or recon guring Serial ATA or periph...

Page 5: ...v Preface Notes...

Page 6: ...ackplane 1 3 Cooling System 1 3 1 4 Contacting Supermicro 1 5 Chapter 2 System Setup 2 1 Overview 2 1 2 2 Unpacking the System 2 1 2 3 Setting Up the System 2 2 Checking the Motherboard Setup 2 2 Chec...

Page 7: ...sor 5 5 Installing the Heat Sink 5 8 Removing the Heat Sink 5 9 5 7 Adding PCI Add On Cards 5 11 5 8 Serverboard Details 5 12 C2SBX Quick Reference 5 13 5 9 Connector De nitions 5 14 Main ATX Power Su...

Page 8: ...d Indicators 5 24 GLAN1 2 LEDs 5 24 Onboard Power LED LE1 5 24 5 12 Parallel Floppy IDE and SATA Ports 5 25 Parallel Printer Port Connector 5 25 SATA Ports 5 25 IDE Connector 5 26 Floppy Connector 5 2...

Page 9: ...tion 7 1 7 2 Running Setup 7 2 7 3 Main BIOS Setup 7 2 7 4 Advanced Setup 7 6 7 5 Security Settings 7 19 7 6 TPM Trusted Platform Modules State 7 21 7 7 Boot Settings 7 22 7 8 Exit 7 23 Appendix A BIO...

Page 10: ...Notes x SuperWorkstation 5035B T User s Manual...

Page 11: ...on 5035B T www supermicro com In addition to the serverboard and chassis various hardware components have been included with the SuperWorkstation 5035B T as listed below One 1 cooling fan FAN 0060L On...

Page 12: ...e size and speed should be used See Chapter 5 for details Serial ATA A SATA controller is integrated into the South Bridge ICH9R section of the chipset to provide a six port Serial ATA subsystem which...

Page 13: ...The control panel on the SuperWorkstation 5035B T provides you with system monitoring and control LEDs indicate power on network activity hard disk drive activity and overheat conditions The control...

Page 14: ...e2 Processor ICH9R SPI LPC I O Mse Kybd FDD SER 1 2 PRN VRM 11 0 ADDR CTRL CTRL ADDR DATA DATA LPC PCI 32 DDR3 1333 1066 800MHz DMI 2x PCI 32 DIMM CHA SATA 6x SATA 3 0 CK505 CLK PCI E x16 Graphic X38...

Page 15: ...s Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Techn...

Page 16: ...1 6 SuperWorkstation 5035B T User s Manual Notes...

Page 17: ...with the carrier who delivered it Decide on a suitable location for setting up and operating the SuperWorkstation 5035B T It should be situated in a clean dust free area that is well ventilated Avoid...

Page 18: ...ard The processor should have its own heatsink attached See Chapter 5 for instructions on processor installation Check the system memory Your system may have come with system memory already installed...

Page 19: ...Chapter 2 System Setup 2 3 Figure 2 1 Accessing the Inside of the 5035B T...

Page 20: ...cm fan that is built in to the power supply The system component layout was carefully designed to promote suf cient air ow throughout the chassis Also note that all power and data cables have been rou...

Page 21: ...l panel This chapter explains the meanings of all LED indicators and any appropriate response you may need to take 3 2 Control Panel Buttons There are two push buttons located on the front of the chas...

Page 22: ...Power Indicates power is being supplied to the system s power supply units This LED should normally be illuminated when the system is operating HDD Channel activity for all HDDs This light indicates S...

Page 23: ...ve Carrier LEDs Each Serial ATA drive carrier has two LEDs Green When illuminated the green LED on the front of the SATA drive carrier indicates drive activity A connection to the SATA backplane enabl...

Page 24: ...3 4 SUPERWORKSTATION 5035B T User s Manual Notes...

Page 25: ...ith the operating system rst and then unplug the power cords of all the power supply units in the system When working around exposed electrical circuits another person who is familiar with the power o...

Page 26: ...from your body which are excellent metal conductors that can create short circuits and harm you if they come into contact with printed circuit boards or areas where power is present Serverboard Batte...

Page 27: ...se Touch a grounded metal object before removing the board from the antistatic bag Do not let components or PCBs come into contact with your clothing which may retain a charge even if you are wearing...

Page 28: ...ure that the chassis cover is in place when the 5035B T is operating to assure proper cooling Out of warranty damage to the system can occur if this practice is not strictly followed Figure 4 1 Instal...

Page 29: ...to handle them very carefully see previous chapter To prevent the serverboard from bending keep one hand under the center of the board to support it when handling The following measures are generally...

Page 30: ...the back lip of the top cover of the chassis then pull the cover off The C2SBX requires a chassis big enough to support a 12 x 9 6 serverboard such as Supermicro s SC733TQ 465 Make sure that the I O p...

Page 31: ...s SATA drive data cable I SATA0 I SATA3 Control Panel cable JF1 SGPIO cable SGPIO1 Important Make sure the the cables do not come into contact with the fans Connecting Power Cables The C2SBX has a 24...

Page 32: ...tton Power Button Power LED HDD LED NIC1 LED x OH Fan Fail LED x Ground Ground 2 1 16 15 11 15 14 12 13 4 2 5 9 3 6 8 1 10 7 3 16 17 I O Port De nitions 1 PS 2 Keyboard 10 Back Panel USB Port 1 2 PS 2...

Page 33: ...re that you use only an Intel certi ed multi directional heat sink and fan Install the serverboard into the chassis before you install the CPU heat sink and fan When purchasing an LGA775 processor or...

Page 34: ...n Pin 1 of the CPU with Pin 1 of the socket Once aligned carefully lower the CPU straight down and into the socket Do not drop the CPU on the socket Do not move the CPU horizontally or vertically Do n...

Page 35: ...alled Step 8 8 If the CPU is properly installed into the socket the black plastic cover will be automatically released from the load plate when the lever is pushed into the hook Remove the cover from...

Page 36: ...heat sink Apply the proper amount of thermal grease to the CPU If your heat sink came with a thermal pad please ignore this step If necessary rearrange the wires to make sure that they are not pinche...

Page 37: ...IMM Installation Insert the desired number of DIMMs into the memory slots starting with DIMM1A For an interleaved memory scheme install two modules at a time beginning with DIMM1A and DIMM1B the blue...

Page 38: ...emory availability is disproportional Refer to the following Memory Avail ability Table for details To Remove Use your thumbs to gently push each release tab outward to free the DIMM from the slot Mem...

Page 39: ...e PCI slot shield for the slot you wish to populate Fully seat the card into the riser card slot pushing down with your thumbs evenly on both sides of the card Finish by using a screw to secure the to...

Page 40: ...TA1 I SATA3 Front Panel CTRL Intel X38 North Bridge 24 pin ATX PWR Audio Controller CD IN Front Audio W83627DHG Floppy S I O IDE CTRL 8 Pin PWR JL1 LE1 Intel ICH9R South Bridge PXH V ITE 8213 I SATA2...

Page 41: ...scription 1394_1 1394_2 IEEE 1394 Firewire Headers Audio FP Front Panel Audio Connector CD_IN Audio CD Input Header COM1 COM2 COM1 2 Serial Ports Fan 1 5 Fan1 CPU Fan Fans 2 5 Chassis Fan Headers Flop...

Page 42: ...s NC 8 PWR_OK 21 5V 9 5VSB 22 5V 10 12V 23 5V 11 12V 24 COM 12 3 3V Reset Button Pin De nitions JF1 Pin De nition 3 Reset 4 Ground Power Button Pin De nitions JF1 Pin De nition 1 PW_ON 2 Ground Auxill...

Page 43: ...ections for the GB LAN port are on pins 11 and 12 of JF1 At tach an LED cable to display network activity See the table on the right for pin de nitions OH Fan Fail Indicator Status State De nition Off...

Page 44: ...2 mouse are located on the I O back panel The mouse port is above the keyboard port See the table on the right for pin de nitions Fan Header Pin De nitions FAN1 5 Pin De nition 1 Ground Black 2 12V Re...

Page 45: ...ee the table on the right for pin de nitions SGPIO Header Pin De nitions SGPIO1 SGPIO2 Pin De nition Pin De nition 1 NC 2 NC 3 Ground 4 DATA Out 5 Load 6 Ground 7 Clock 8 NC NC No Connection Wake On R...

Page 46: ...dio FP If the front panel interface card is not connected to the front panel audio header jumpers should be installed on pin pairs 1 2 5 6 and 9 10 of the Audio FP header If these jumpers are not inst...

Page 47: ...PWR 1394 10 ZY Universal Serial Bus USB There are 12 Universal Serial Bus USB2 0 ports headers on the C2SBX Six of them are back panel USB ports USB 0 1 2 3 4 5 In ad dition four headers are provided...

Page 48: ...jumper is on both pins and Open means the jumper is either on only one pin or completely removed Connector Pins Jumper Setting 3 2 1 3 2 1 CMOS Clear JBT1 is used to clear CMOS which will also clear a...

Page 49: ...losed Closed Enabled Open Open Disabled SMBus to PCI PCI E Slots Jumpers JI2C1 and JI2C2 allow you to connect the PCI slots to the System Management Bus I2 C The default set ting is Open to disable th...

Page 50: ...e nition 1 2 Enabled 2 3 Disabled USB Wake Up Use the JPUSB1 2 jumpers to allow the system to be Woken Up via USB devices by pressing a key on the USB keyboard or by clicking the USB mouse of your sys...

Page 51: ...rmal setting the user needs to press the power button to power on the system Power Force On Jumper Settings JPF Jumper Setting De nition Open Normal default Closed Force On IEEE 1394 Enable JP12 allow...

Page 52: ...right for the functions associated with the connection speed LED GLAN1 2 LED Connection Speed Indicator LED Color De nition Off 10 MHz Green 100 MHz Amber 1 GHz Onboard Power LED LE1 An Onboard Power...

Page 53: ...ur disk drive for details on actual jumper locations and settings for the hard disk drive Parallel Printer Port Connector The parallel printer port is located on the I O backplane See the table on the...

Page 54: ...Connector The oppy connector is designated Floppy See the table on the right for pin de nitions Floppy Drive Connector Pin De nitions Floppy Pin De nition Pin De nition 1 Ground 2 FDHDIN 3 Ground 4 Re...

Page 55: ...lowing measures are generally suf cient to protect your equipment from static discharge Precautions Use a grounded wrist strap designed to prevent static discharge Touch a grounded metal object before...

Page 56: ...e appropriate comn nector on the front control panel PCB printed circuit board Pull all excess cabling over to the control panel side of the chassis The LEDs inform you of system status see Figure 6 1...

Page 57: ...t View 5 25 Drive Bays System Reset Main Power SATA Active LED System LEDs Front Side USB Floppy Drive Bay optional SATA Drive Con guration Drive IDs are marked on the front bezel From bottom to top t...

Page 58: ...6 4 SUPERWORKSTATION 5035B T Manual Figure 6 3 Chassis Rear View PCI Expansion Slots I O Backplane Power Supply...

Page 59: ...cm fan failed the power supply will need replaced see sec tion 6 5 Power down the system and remove the left chassis cover by rst removing the two screws from the back lip of the cover Push in the re...

Page 60: ...new fan has been installed into the fan duct reassemble the fan duct and perform the removal procedure in reverse to install the entire fan duct assembly back into the chassis Make sure the wiring for...

Page 61: ...are mounted in drive carriers to simplify their installation and removal from the chassis These carriers also work to promote proper air ow for the system For this reason even carriers without SATA dr...

Page 62: ...6 8 SUPERWORKSTATION 5035B T Manual Figure 6 5 Removing a SATA Drive Carrier...

Page 63: ...e CD ROM into the bay and secure it to the chassis with the drive carrier screws you rst removed Attach the power and data cables to the drive Replace the top left chassis cover before restoring power...

Page 64: ...e power cord from the power supply Then remove the power supply connectors going to the motherboard and the SATA backplane Remove the screws that secure the unit to the mounting brackets in the chas s...

Page 65: ...em parameters Each time the computer is powered on the computer is con gured with the values stored in the CMOS logic by the system BIOS which gains control at boot up How To Change the Con guration D...

Page 66: ...By pressing Delete immediately after turning the system on or 2 When the message shown below appears briefly at the bottom of the screen during the POST Power On Self Test press the Delete key to acti...

Page 67: ...y disk drive installed as diskette A The options are Disabled 360Kb 5 25 in 1 2MB 5 25 in 720Kb 3 5 in 1 44 1 25MB 3 5 in and 2 88MB 3 5 in BIOS Date The item displays the date that the BIOS was built...

Page 68: ...and the IAA Driver is used The options are Enabled and Disabled SATA AHCI Legacy Select Enable to use Legacy Mode for SATA Advanced Host Interfacing When this feature is set to Enabled SATA Port 5 and...

Page 69: ...item allows the user to specify the number of sectors per block to be used in multi sector transfer The options are Disabled 4 Sectors 8 Sectors and 16 Sectors LBA Mode Control This item determines wh...

Page 70: ...them have sub menus that can be accessed by highlighting the item and pressing Enter Boot Features Access the submenu to make changes to the following settings Quiet Mode This setting allows you to En...

Page 71: ...nd Off Resume On PME Select On to wake your system up from the PME of PCI slots The options are On and Off PS2 Keyboard KB Mouse Wake Up Select Enable to wake your system up from the S3 S4 or S5 state...

Page 72: ...rted by the CPU Set to Enabled to use a processor s Second Core and beyond Please refer to Intel s web site for more information The options are Disabled and Enabled Single Logical Processing Set to E...

Page 73: ...e when supported by the CPU Select Enabled to use the feature of Virtualization Technology to allow one platform torunmultipleoperatingsystemsandapplicationsinindependentpartitions creating multiple v...

Page 74: ...r to select the video device used by the BIOS during POST If set to Auto PEG and PCI devices will be selected If set to PEG PEG devices will be selected If set to PCI PCI devices will be selected Azal...

Page 75: ...BIOS buffer to allow the BIOS to write cache data into this reserved memory area Select Write Protect to enable the function and this area will be reserved for Video BIOS ROM access only Select Uncach...

Page 76: ...to prevent data from being written into the extended memory area above 1 MB Select Write Back to allow the CPU to write data back directly from the buffer without writing data to the System Memory fo...

Page 77: ...r Unix Novelle and other Operating Systems please select the option other If a drive fails after the installation of a new software you might want to change this setting and try again A different OS r...

Page 78: ...try again A different OS requires a different Bus Master clock rate I O Device Con guration Access the submenu to make changes to the following settings KBC Clock Input This setting allows you to sel...

Page 79: ...se I O Address Select the base I O address for the parallel port The options are 378 278 and 3BC Interrupt This setting allows you to select the IRQ interrupt request for the parallel port The options...

Page 80: ...nt log capacity It is not a setting View DMI Event Log Highlight this item and press Enter to view the contents of the event log Event Logging This setting allows you to Enable or Disable event loggin...

Page 81: ...19 2K 38 4K 57 6K and 115 2K Console Type This item allows you to set the console redirection type The options are VT100 VT100 8bit PC ANSI 7bit PC ANSI VT100 VT UTF8 and ASCII Flow Control This item...

Page 82: ...pin the fan speed will be controlled by Pulse Width Modulation PWM Select 3 pin if your chassis came with 3 pin fan headers Select 4 pin if your chassis came with 4 pin fan headers Select Workstation...

Page 83: ...password has been entered for the system User Password Is This item indicates if a user password has been entered for the system Clear means such a password has not been used and Set means a user pass...

Page 84: ...ord on Boot When set to Enabled a user will need to key in a password to enter the system at system boot The options are Enabled password required and Disabled password not required Trusted Platform S...

Page 85: ...tate Select Clear to clear or erase all information related to TPM support If set to Clear the sub menu Physical Presence Operations will appear Select Reject to cancel the selection Select Execute to...

Page 86: ...t functions for the devices included in the candidate list above are currently disabled Use a key or a key to move the device up or down Use the f key or the r key to specify the type of an USB device...

Page 87: ...Discarding Changes Highlight this item and hit Enter to exit the BIOS Setup utility without saving any changes you may have made Load Setup Defaults Highlight this item and hit Enter to load the defau...

Page 88: ...7 24 SuperWorkstation 5035B T User s Manual Notes...

Page 89: ...Keyboard controller failed test May require replacing keyboard controller Keyboard locked Unlock key switch Unlock the system to proceed Monitor type does not match CMOS Run SETUP Monitor type not co...

Page 90: ...If the failure was caused by incorrect values and they are not corrected the next boot will likely fail On systems with control of wait states improper Setup settings can also terminate POST and caus...

Page 91: ...est error Fail Safe Timer takes too long Device Address Con ict Address con ict for speci ed device Allocation Error for device Run ISA or EISA Con guration Utility to resolve resource con ict for the...

Page 92: ...not found Operating system cannot be located on either drive A or drive C Enter Setup and see if xed disk and drive A are properly identi ed Parity Check 1 nnnn Parity error found in the system bus BI...

Page 93: ...devices have the Con guration Request bit set in the LCT Run an I2O Con guration Utility e g the SAC utility System BIOS shadowed System BIOS copied to shadow RAM UMB upper limit segment address nnnn...

Page 94: ...A 6 SuperWorkstation 5035B T User s Manual Notes...

Page 95: ...tempt to initialize video and write the error in the top left corner of the screen The following is a list of codes that may be written to port 80h POST Code Description 02h Verify Real Mode 03h Disab...

Page 96: ...own 38h Shadow system BIOS ROM 3Ah Auto size cache 3Ch Advanced con guration of chipset registers 3Dh Load alternate registers with CMOS values 41h Initialize extended memory for RomPilot optional 42h...

Page 97: ...81h Late POST device initialization 82h Detect and install external RS232 ports 83h Con gure non MCD IDE controllers 84h Detect and install external parallel ports 85h Initialize PC compatible PnP IS...

Page 98: ...B5h Terminate QuietBoot optional B6h Check password optional B7h Initialize ACPI BIOS and PPM Structures B9h Prepare Boot BAh Initialize SMBIOS BCh Clear parity checkers BDh Display MultiBoot menu BEh...

Page 99: ...interrupt vectors F1h Initialize Run Time Clock F2h Initialize video F3h Initialize System Management Manager F4h Output one beep F5h Clear Huge Segment F6h Boot to Mini DOS F7h Boot to Full DOS If th...

Page 100: ...B 6 SuperWorkstation 5035B T User s Manual Notes...

Page 101: ...with your motherboard Note the current version of the ICH9R SATA RAID Utility can only support Windows XP 2000 2003 Operating Systems Serial ATA SATA Serial ATA SATA is a physical storage interface t...

Page 102: ...u the change the HDD partition size without any data Con guring BIOS settings for SATA RAID Functions in Native Mode Press the Del key during system bootup to enter the BIOS Setup Utility Note For the...

Page 103: ...n shots shown in the manual are for reference only The screen shots shown in the manual do not imply Supermicro s endorsement or non endorsement on any 3rd party s product Your screens may or many not...

Page 104: ...it A triangle appears to con rm the selection of the drive When all RAID drives for this volume have been selected hit Enter f Use the Up Arrow Down Arrow keys to select the stripe size ranging from 4...

Page 105: ...to select the HDD to con gure as RAID The following pop up screen displays See the note on Page C 3 e Use the Up Arrow Down Arrow keys to highlight a drive and press Space to select it A triangle app...

Page 106: ...t it A triangle appears to con rm the selection of the drive When all RAID drives for this volume have been selected hit Enter f When the Stripe Size is highlighted use the Up Arrow Down Arrow keys to...

Page 107: ...it A triangle appears to con rm the selection of the drive When all RAID drives for this volume have been selected hit Enter f Use the Up Arrow Down Arrow keys to select the stripe size ranging from...

Page 108: ...k drives when deleting a RAID set a From the main menu select item2 Delete RAID Volume and press Enter b Use the Up Arrow Down Arrow keys to select the RAID set you want to delete and press Del A Warn...

Page 109: ...volume c Press Enter to reset the RAID set drive A Warning message displays d Press Y to reset the drive or type N to go back to the main menu Exiting the Intel Matrix Storage Manager Utility a From...

Page 110: ...Enter key Choose the Intel R ICH9R SATA RAID Controller from the list indicated in the XP 2000 2003 Setup Screen and press the Enter key Press the Enter key to continue the installation process If yo...

Page 111: ...rams and drivers click the icons to the right of these items Notes Click the icons showing a hand writing on the paper to view the readme les for each item Click a computer icon to the right of an ite...

Page 112: ...tor III displays crucial system information such as CPU temperature system voltages and fan status See the Figure below for a display of the Supero Doctor III interface Note Both default user name and...

Page 113: ...rol Note SD III Software Revision 1 0 can be downloaded from our Web site at ftp ftp supermicro com utility Supero_Doctor_III You can also download SDIII User s Guide at http www supermicro com PRODUC...

Page 114: ...D 4 SuperWorkstation 5035B T User s Manual Notes...

Page 115: ...800 SDRAM Note See the memory section in Chapter 5 for details SATA Controller Intel on chip controller for 3 Gb s Serial ATA RAID 0 1 5 and 10 support Drive Bays Four 4 hot swap drive bays to house f...

Page 116: ...BTU Rating 1994 BTUs hr for rated output power of 465 W Operating Environment Operating Temperature 10 to 35 C 50 to 95 F Non Operating Temperature 40 to 70 C 40 to 158 F Operating Relative Humidity 8...

Page 117: ...anagement Practices Regulations for Perchlorate Materials This Perchlorate warning applies only to products containing CR Manganese Dioxide Lithium coin cells Perchlorate Material special handling may...

Page 118: ...E 4 SuperWorkstation 5035B T User s Manual Notes...

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