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electronic noise.  In this case, do not block the beam so that the 0%TBaseline 
accounts for the light reflecting on the edges of the aperture.  

Performing a Zero/Baseline Correction

:

 Select this option to apply a 100%T 

baseline correction (100%TBaseline) and a zero-line correction (0%TBaseline) to 

the sample scan (S). This correction is performed with the raw transmission data 
and is thus: 

𝑆

0%

𝑇𝐵𝑎𝑠𝑒𝑙𝑖𝑛𝑒

100%

𝑇𝐵𝑎𝑠𝑒

𝑙𝑖𝑛

0%

𝑇𝐵𝑎𝑠𝑒𝑙𝑖𝑛𝑒

 

With this option, the Cary will prompt you to perform a 100%TBaseline first, 
followed by a 0%TBaseline when you perform a baseline collection. 

Basics of measurement acquisition 

The wavelength range is 1800 nm to 250 nm.   Scans normally go from long to short 
wavelengths.  There are two detectors, a PMT and an InGaAs.  The wavelength at which 

the system changes from one to the other (accompanied by a grating change) can be 
adjusted.  Usually 750 to 800 nm is a good value for this change over.  You can see the 

change in the spectrum when you take a baseline (% Transmission or Reflection).  If 
you see a step in the spectrum, it may mean your baseline is bad or that your sample 
has a polarization dependency.  

Setup 

– The setup button located in the upper left-hand corner defines the scan 

parameters.  The following useful tabs can be found under Setup.  

Cary tab  

Here you can set the units of the x-and y axes (nm, cm

-1

, etc. and A, %T, %R, etc.), 

as well as the range for the axes.  Under scan controls, the average time per data 
point and the data interval can be set can be controlled.  Note that you only have 
independent control over two of these values.   

Options tab under Setup 

Here you control the Beam Mode, Slit Band Width, and Slit Height (

see Appendix 

A of this guide for more info

).  The Double beam mode needs to be used for the 

integrating sphere measurements and the SBW is typically set to 2nm.  
As mentioned earlier, the Slit Height can be used to decrease the beam spot size  
Typically, the UV-Vis button will be selected.  If you do not need to go to shorter 
wavelengths than 400 nm, you can select the Vis button, which will save on the 
lifetime of the UV lamp.    
You can also set the wavelength at which the Detector and grating change.  Both 
of these are typically set at 800 nm, if you have an important spectroscopic 

feature at 800 nm, you can move the change over +/- 50 nm 

Baseline tab  

This tab enables you to choose the type of baseline(s) that you want to use in the 

Scan run. The different types of baseline corrections are particularly useful with 

Summary of Contents for Cary 5000

Page 1: ...n on computer 2 Check lens and mirror are correct for your measurement a Install Small Sample Kit mirror M3 SSK or regular M3 mirror if needed b If using SSK install correct lens L2 3 Make sure cover...

Page 2: ...e Turn on the instrument 0 I switch on the lower left side of the front of the instrument In the Scan program watch the lower left corner to see the status of the instrument When the traffic light is...

Page 3: ...mounts in front of the sample see Figure 4 There are three lenses that can be used again for the three positons marked as T C or R Each time the sample configuration is changed the optics need to be...

Page 4: ...T C and R for the three positions of the integrating sphere Also the large mirror M3 is switched out for a one with a different curvature this mirror is always kept in the T position regardless of the...

Page 5: ...on located in the upper left hand corner defines the scan parameters The following useful tabs can be found under Setup Cary tab Here you can set the units of the x and y axes nm cm 1 etc and A T R et...

Page 6: ...be applied to a sample where the abscissa range of the sample exceeds that of the baseline If you change your abscissa range to one outside that of the baseline the Cary will display an error message...

Page 7: ...x at the end of a collect where you can enter the Batch file name for your data Note In the Scan application Prompt at Start and Prompt at End save information as a DSW file unless there are multi or...

Page 8: ...multiple graphs in the Graphics area You can double click on the Graphics area to toggle the display through graph and report to graph only The graph functions can also be accessed by clicking one of...

Page 9: ...ich Text Format file How to Export Collected Data If you want to export data from a Cary WinUV application into a third party application then save your data as an ASCII CSV file To do this 1 Click Fi...

Page 10: ...eck box is not checked 8 In the File name field type in the file name for your new batch file 9 Click Save to create the new batch file The current method will be stored with the batch files All the d...

Page 11: ...SBW will change automatically to maintain the required signal level If you are collecting data in double beam mode across the UV Vis and NIR regions with Fixed SBW set as the Measurement Mode then you...

Page 12: ...nes for another Scan run you simply open the file using either the File Open Data command or click the Baseline button in the Baseline tab of the Setup dialog box Note If you decide that you do not wa...

Page 13: ...gle bounce relative SRA accessories should not use this correction Select a Baseline Zero correction instead This correction is performed with the raw transmission data and due to the double bounce on...

Page 14: ...owever sometimes you may notice that the text has turned to gray and is in italics This indicates that the Cary is currently idling outside the abscissa range of the baseline file but that the current...

Page 15: ...ferences and Graph Preferences options 1 Graph menu options Print XY point Select this to print the cursor s current X and Y coordinates in the report area This option is only available when right cli...

Page 16: ...to Arrange Graphs Select Auto Arrange Graphs to view and arrange all graphs simultaneously Copy Graph Select this to copy the Graphics area onto the Windows Clipboard Paste to Graph Select this to pas...

Page 17: ...in traces You can resize the Name of Trace and File name fields by selecting and dragging the splitter bar between the fields File Name This field displays the file name and path of the trace If the n...

Page 18: ...il the font is changed again Trace Style This field allows you to define the way that your trace will appear on screen Points Each individual data point collected by the Cary is shown on the graph Poi...

Page 19: ...e right side of each graph box A single click on a sample name or example line within the legend will make it the focused or red scan Information about the trace will be displayed below the X axis Dou...

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