Magnis and Magnis Dx NGS Prep System User Guide
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Set up and initiate the protocol run
For detailed instructions on running a protocol for your particular sample type, refer to the user
manual for your Magnis Target Enrichment Kit.
1
From the Home screen, press
Run Protocol
.
The system locks the instrument door and performs an IHC. At completion of the IHC, the
Enter Run Info step opens.
2
Complete the Run Setup steps and start the protocol run, as instructed in the user manual for
your Magnis Target Enrichment Kit.
The software walks you through the individual Run Setup steps (
), starting with the
Enter Run Info step. Press the forward and back arrow buttons to navigate through the steps
(or, if using a USB-connected mouse, click the arrow buttons with the cursor). Because the
steps vary depending on the type or target enrichment you are running, you will need to refer to
the instructions and screen images provided in the user manual for your Magnis Target
Enrichment Kit.
After you start the run, the system’s status indicator lights turn green, indicating that a protocol
run is in progress. The lights change from green to blue upon completion of the run. Additionally, if
your account is set up to receive email alerts, the system sends you an email when the run is
complete.
If the system encounters an error during the protocol, the status indicator lights change to red
and, if your account is configured for alerts, the system sends you an email notifying you of the
error.
Figure 19
Protocol workflow, with corresponding color of the status indicators lights
Run Setup Steps
Enter Run Info
Set Up Deck
Verify Labware
Enter Sample Info
Confirm Setup & Start Run
LED: white
Running
Complete
LED: green
LED: blue
