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Installation and Startup
1.6 EXAMPLE OF A STANDARD LANE ANALYSIS
In the oligosaccharide sample image (demo1.raw) provided with your Glyco Doc system, there must be at
least nine Band Markers in the oligosaccharide standard lane or the analysis will fail and the error dialog box
is displayed. (More than nine markers may be present, as there are more than nine bands in the glucose
ladder standard.) Standard bands G4 through G12 must have Band Markers. G4 is not as bright as the
other bands in the lane and can be identified by this characteristic. It should have a marker since it is a key
reference band in the oligosaccharide standard.
If the number of bands does not agree with the set standard, then the analysis fails and the error dialog box
appears.
A procedure for a standard lane analysis is provided below.
1.
Remove any erroneous band markers from the standard lane.
Shadow bands or blotches in the image are sometimes incorrectly marked during automatic band find-
ing. Only the main bands in a standard lane should have band markers.
a.
Click on the unwanted band’s marker. The selected marker is displayed in green.
b.
Select Delete from the Bands menu or use the Delete key.
2.
Select a standard.
a.
Select Standard Lane Analysis from the Bands menu.
b.
In the Select a Standard dialog box, select Oligosaccharides.
3.
Select a band from the standard lane to serve as a reference for the lane.
1.
From the Click On Bands dialog box, indicate the band to be selected.
2.
Find the corresponding band in the image, and mark it by clicking on it. Then, press the OK button.
For Oligosaccharides, the G4 band identifies the standard lane. (G4 is in the lower half of the standard
lane and appears approximately one quarter as bright as the other bands in the lane.) It is used to indi-
cate a Degree of Polymerization (DP) of 4, and a quantity of 50 pMols. In the default settings G4 is
given an Rf=1, G12 is given an Rf=0.
4.
Enter the band’s quantification value.
In the Quantification Value window, enter the number of pMols of sugar for the band selected in step 3.
Then press OK.
For purposes of this demonstration, enter: Oligosaccharide sample: G4 = 50.
A standard lane’s designator is the letter “s”, rather than a number.
Summary of Contents for 170-6555
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