background image

 

 

Last Updated on Sep 2021 

power, until blue pixels just disappear. Decrease Offset until you have a dusting of green pixels 
in the background where there are no cells. 

When using the HyD detectors, gain is set at default 100 reduce it or the laser power to prevent 
oversaturation. Activate gating when using the WLL to remove laser reflection or auto 
fluorescence. Make sure to choose the correct reference line when using gating.  

Click on QuickLUT button twice to switch from range indicator mode to normal colour view. 

Click 

Capture Image

 or 

Start

 to capture an image.  

4.9 How to do a Z stack for a 3D Image 

 

Scroll down to the 

Z-stack

 option in the 

Acquisition

 tab. 

 

Select 

Live

 to see the specimen. 

 

Use the focus knob on the USB control panel or point the 
cursor in the Z-stack box panel and use the mouse scroll 
wheel to focus up and down (do not use the 

microscope’s focus knob). 

 

 

Move all the way to the top of your sample and click on 
the 

Begin

, turning it red, to mark the start 

position. 

 

Use the mouse scroll wheel to move to the bottom of your 
sample and click on the 

End

, turning it red to mark the end 

position. 

 

With 

system optimized

 

selected the program will 

determine the optimal settings for your Z-stack. You can 
override these settings using the 

Nr. of steps

 or 

z-step size

 

boxes. Beware that changing these will alter the z-
resolution you attain. 

 

Click the 

Start

 button to begin the series. 

 

 

Summary of Contents for TCS SP8

Page 1: ...ng and System Access 5 3 1 Acknowledgements 6 4 Operation Procedures 6 4 1 Switching ON Protocol 7 4 2 Objective Lens 7 4 3 Software initiation 8 4 4 Turning on the lasers 8 4 5 Using Dye Assistant ta...

Page 2: ...Last Updated on Sep 2021 THIS PAGE IS INTENTIONALLY LEFT BLANK...

Page 3: ...ensure the lasers have sufficient time to heat up and cool down before running again When using the lasers to image NEVER look directly at the laser while imaging If a safety shutter is present make s...

Page 4: ...hen you notice that a bulb has reached between 2 000 2 500 hours or is not functioning properly 2 Training Use of confocal microscopy and the online booking system is authorized by facility staff only...

Page 5: ...week but it has to be shared across the systems that they have received training on Each booking must not exceed 3 hours If users have utilized all their entitled bookings for the week 24Hr Rule can b...

Page 6: ...Operation Procedures Every confocal system in TLL Bioimaging Facility has its specific instructional manual which are found in every confocal rooms Strictly adhere to the correct order of operation fo...

Page 7: ...re ON for a minimum of 2hrs before switching OFF as it requires sufficient time for warming up STED laser You may switch ON up to 100 Make sure the STED lasers are ON for at least 1hr before switching...

Page 8: ...4 4 Turning on the lasers 1 Under the Visible panel click on the button to open the laser panel 2 Click on the UV 405nm Visible Argon and SuperContVisible2 WLL bar to observe 405nm Argon and WLL respe...

Page 9: ...ector HyD or PMT you would like to image with your dyes HyD is more sensitive than PMT 4 The Dye assistant will give you a list of laser settings options to select from Select the settings which has t...

Page 10: ...our fluorophore Important Make sure that the emission band is at least 8 10nm away from your excitation line Choose an appropriate detector pseudocolour also known as a Look Up Table or LUT For PMT se...

Page 11: ...tional X Useful for live imaging unless you require fast imaging in which case you will need to adjust the phase correction Zoom is where you control the zoom parameters the arrows allow you to nudge...

Page 12: ...e background black level Pinhole the wider the pinhole aperture the thicker is the optical slice which means a blurrier but brighter image Make sure you also lower the laser power if you have to incre...

Page 13: ...3D Image Scroll down to the Z stack option in the Acquisition tab Select Live to see the specimen Use the focus knob on the USB control panel or point the cursor in the Z stack box panel and use the m...

Page 14: ...e any images which are older than 3 months Please make sure to do a backup Option 2 In TLL research cmn drive folder in your respective lab folders Option 3 In your own lab drive Option 4 In your pers...

Page 15: ...ethanol to remove any oil residues e In the event of logging off you may leave the lasers ON and exit LASX Otherwise Switch off all lasers within the software Diode Laser OFF 405nm White Light laser...

Page 16: ...s issue is a scanner issue you will not hear clicking as the program is shutting down and performing its pre shutdown WLL checks 2 Switch off the LSM switch 3 marked Scanner 3 Switch on the LSM 4 Open...

Page 17: ...If it says the HyD overloaded use the following steps 1 Turn off Live View 2 Ensure that the detection band is set at least 10nm away from any laser you are using 3 Set the HyD gain to 100 always Brig...

Page 18: ...Last Updated on Sep 2021 5 1 Troubleshooting Appendix Switches under computer terminal Power schematic diagram of the SP8...

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