CYTENA x.sight Software Manual Download Page 24

x.sight - software manual 

24 |

 

P a g e

 

f.sight special 

The  following  section  covers  functions  and  features  that  are  only  available  in  f.sight 
models.  

4.1  Cell camera modes 

f.sight models carry two independent cameras, one for bright field and one for fluorescence 
detection.  Below  the 

Cell  Camera 

section  there  are  several  f.sight  specific  functions  to 

control the different cameras. 

 

The [

Overlay

] button allows for displaying the detected cell contours as an overlay on top 

of  the camera  window. All  detected  objects  will  then  be  surrounded  by  the  respectively 
detected  contour.  The  following  image  shows  the  difference  when  Overlay  is  off  (left 
picture)  and  on  (right  picture).  The  blue  circles  represent  the  ROI,  the  green  contour 
represents the cell.  

 

 

 

Hint:  Using the overlay function will increase the required computing time and 
thus  slow  down  the  process.  Especially,  when  a  sample  with  higher 
concentration is loaded. The overlay may be helpful during setup to verify if your 
settings are correct. It is recommended to switch off the function during standard 
printing runs to speed up the process.  

   

 

An additional drop-down menu  is displayed below the cell camera window. It allows for 
switching between the bright field and fluorescence camera channels and it provides the 
possibility to show a combined two channel image. Options here are:  

Summary of Contents for x.sight

Page 1: ...x sight software manual cytena GmbH Supporting software versions 1 0 7 or higher...

Page 2: ...mechanical or chemical processes It is possible that the present manual still contains typographical or printing errors The information in this manual however is regularly reviewed and corrections are...

Page 3: ...ain screen DISPENSE 15 3 6 Cell Camera Region of Interest ROI 18 3 7 Results 21 3 8 Live log window 22 4 f sight special 24 4 1 Cell camera modes 24 4 2 Camera alignment mode 25 4 3 Collect sample mod...

Page 4: ...x sight software manual 4 P a g e 6 2 Domain domain users 35 6 3 Connection to local network 35 6 4 Connection of additional drives 35...

Page 5: ...tention These are color coded like shown below Example this is an example text Hint this is a note text Disclaimer of warranty The x sight device is designed for research and may not be used for diagn...

Page 6: ...ired 2 2 Embedded PC information OS Win7 x64 Professional until 2019 Win10 x64 Professional from 2020 CPU Intel Core i7 6700 3 4 GHz RAM 8 GB DDR 4 Hard drive 240 GB SSD SATA M2 Partition C OS 100 GB...

Page 7: ...al peripheral standards The following conditions shall be met Min monitor resolution 1920x1080 HD Compatible monitor interfaces DVI HDMI Displayport DP Compatible keyboard interface USB 2 Compatible m...

Page 8: ...is depends on the configuration and device type you have For any question please contact technical support 3 1 General handling The software contains four main tabs LOAD SETTINGS DROPLET QC and DISPEN...

Page 9: ...permanently deleted and has to be re added if required The Load Program button in the top right corner can be used to directly load an existing program This will not add a tile to the start screen but...

Page 10: ...age path Drive D is recommended Make sure that the location has sufficient free space for saving data The section Dispensing represents the possibility to enable an automatic idle dispensing mode call...

Page 11: ...ically taken over and is set permanently until changed even when software is restarted Hint The cell detection is sensitive against this value Too low values will generate noise and ghost objects that...

Page 12: ...droplet positioning For example 384 well plates with conical wells for PCR or sequencing applications It can also be useful when targeting special plates or special applications where the position of...

Page 13: ...osition you find three sliders that help to center the droplet in the cameras field of view and bring it in focus Vertical Delay time delay between drop generation and photo acquisition Horizontal hor...

Page 14: ...ld disappear in the camera window This is the proof that the shutter system is working for the given piezo parameters and the used cartridge and sample Show the droplet not disappear the system is not...

Page 15: ...te ID field you can enter your plate barcode or plate name Here you can use the included barcode scanner to read the barcode from your plate into the field The SAVE AS button let you save the current...

Page 16: ...ontains one fluorescent cell1 Print NTC prints a void single droplet no cell inside Print every droplet prints a single droplet independent from its content Hint Besides printing single cells the soft...

Page 17: ...or code red Sliders for size and roundness visible below plate Different configurations on different wells appear as different shades of color code Dispense NTC Color code grey Sliders invisible Diffe...

Page 18: ...e according to its state There are basically three different states not processed The well is colored with respect to the chosen Action e g green for Print fluorescent cell in process When the system...

Page 19: ...chematic below Only when a single cell is detected inside region A inner blue circle and no other object is inside region B between the two blue circles the single cell is printed to the substrate The...

Page 20: ...e the zoom function to enlarge the view To do so press the Roi view button below the Cell Camera window The camera will now show the area around the ROI in higher magnification Click in the window to...

Page 21: ...oints from the graph A counter Data Points right indicates the number of collected data points Example Typically cells e g CHO HEK etc range from 10 to 25 m in size and 0 5 to 0 9 in roundness Double...

Page 22: ...dow The following parameters are measured for each object Is printed shows if an object was printed into the substrate Diameter m shows the average diameter of the object Area m shows the area of the...

Page 23: ...of logged data are displayed in the window As soon as this number is exceeded the oldest entry is deleted and replaced by the latest The bottom line gives you more information about the current log bu...

Page 24: ...d contour The following image shows the difference when Overlay is off left picture and on right picture The blue circles represent the ROI the green contour represents the cell Hint Using the overlay...

Page 25: ...ence match with each other The alignment mode is automatically started with a dialog when either Collect Sample or PLAY buttons are pressed It is recommended to run this alignment once for each new ca...

Page 26: ...ontour and the white object Make sure that contour and object superpose each other like shown in A below Cases where both do not superpose B C where only the blue contour is present but no object D or...

Page 27: ...ain press Retry You can also exit the dialog and return to the main window by pressing Cancel 4 3 Collect sample modes The sample mode is extended to display two types of data dot plots One is the sta...

Page 28: ...ike to use and click on the respective tile e g on 96 WELL PROGRAMS When choosing a favorite use the small tiles 5 3 Set up your experiment In the SETTINGS tab set the boundary conditions for your exp...

Page 29: ...plate You can either select individual wells by left click and combine multiple wells by holding CTRL and left click select all wells by clicking in the top left corner of the interactive plate select...

Page 30: ...only the specific options being available for this action The following example show how individual wells can be independently configured The displayed color code refers to the Action defined for thi...

Page 31: ...Example 4 limiting dilution approach for rare samples Every droplet is delivered 5 5 Loading cartridge and well plate Before you can actually start your experiment you have to load a cartridge with yo...

Page 32: ...ndow as three circles blue green blue 5 7 Performing Droplet QC Before starting an experiment with a new loaded cartridge you must perform droplet quality control DQC To enter DQC mode press the DROPL...

Page 33: ...ngle stable droplet in the image window check the vacuum shutter To do so activate the Turn on check box under Vacuum Settings When being turned on the droplet should disappear in the image window If...

Page 34: ...Refer to the OPTIONS menu to see where this is Every experiment is stored in a separate folder which is named with date and time All specific information from you such as Name Description etc is stor...

Page 35: ...ers have to be set such that the cytena application can be executed by the logged in user and it can save data images log files at the specified hard drive paths Data path can be chosen by the operato...

Page 36: ...ands and Trademarks The cytena logo the name cytena the product series name x sight and the product names c sight f sight and b sight are registered trademarks of cytena GmbH in Europe and or other re...

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