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Start-up

1.  Turn MASTER switch on Belkin Surge-

Master. This will turn on the LUDL stage 

controller, microscope stand and the 

Olympus Microfire color CCD camera.
2. Turn ON X-Cite 120 Hg lamp if needed. 

Note: The X-Cite 120 must stay ON a 

minimum of 20 minutes. It also requires 

20 minutes to cool down. If you turn it 

off, the internal logic chip will not let the 

system arc until it is cooled down.
3.  Log in to the computer.
4.  Load the Stereo Investigator or Neu-

rolucida software (shortcut on desktop 

after training). 
Once the software is up:
Set reference point in Live image in 

software. This will make the live window 

and mouse curser more responsive to 

movement.

Load a sample and find 

focus...

1.  Load a sample: Rotate the 5x lens into 

position, then press the stage speed 

button on the joystick to move the stage 

out. Load your sample. Move the sample 

back under the objective. Push in the  

push/pull rod to deflect light to the 

binocular tube. Use coarse focus on the 

right side of the stand and/or the fine 

focus control on the joystick controller. 

See joystick image to right for help.
2.  Select objective in the software so 

the software knows what objective you 

are using.
3.  Select Imaging Method:

For conventional brightfield viewing:

• Rotate the Condenser Turret Disk to the 

H position.
• Swing out the polarizing filter located 

under the condenser and remove the 

full wave lambda plate if present.
• Align the microscope for Koehler Il-

lumination.
For Transmitted dark field contrast 

microscopy:
Using the 10x, 5x or 2.5x objective, you 

can set the Condenser Turret Disk to D 

after doing the steps above including 

Koehler Illumination.

For widefield fluorescence viewing:

•  Press the RL Key. 
•  Set Reflector Turret to (2) Eyes DUAL 

470EX & 560EX/515EM & 620EM
• Adjust the Incident Iris Stop Slider until 

light intensity is adequate.
• Find Focus preferably on a dye that 

emits in the green range (500-530nm).
•  Pull out the Push/Pull rod to deflect 

light to the camera.

Start-up                                                    

   

1  .   .   .   .   .   .   .   .   .  Turn ON Master Switch

2 .   .   .   .   .   .   .   .   .   .   Log on to Computer
3 .   .   .   .   .   .   .   .   .   .   .   .   .  Load Software
Optional  .   .   .   .   Turn ON X-Cite Hg Lamp

Align Optical Components                 

1 .   .   .   .   .   .   .   .   .   .   Koehler Illumination

Calibrate System                                    

1 .   .   .   .   .   .   .   .   .   .   .   .   .  Grid Tune Lens
2 .   .   .   .   .   Parcentric Parfocal Calibration

Run Experiment                                     

1 .   .   .   .   .   .   .   .   .   .   .   .   .   Set up Subject
2 .   .   .   .   .   .   .   .   .   .Set scope to Low Mag
3 .   .   .   .   .   .   .   .Trace Region(s) of interest
4 .   .   .   .   .   .   .   .   .   Set scope to High Mag
5 .   .   .   .   .   .   . Define Counting Frame Size
6 .   .   .   .   .   .   .   .   .  Define SRS Grid Layout
7 .   .   .   .   .   .   .   .   .Define Disector Options
8 .   .   .   .   .   .   .   . Save Sampling Paramters
9 .   .   .   .   .   .   . Select Markers for Counting
10   .   .   .   .   .   .   .   .   .   .   .   .  Count Objects
11   .   .   .   .   .   .   .   .   View Sampling Results

Fluorescent Imaging

Turn ON X-Cite 120 UV lamp

Note: For Fluorescence imaging: 
Check the Reflector turret is set to desired 
excitation/emission.

• 

Reflector Turret set to:

(1) Transmitted Light/Transmitted Pol.
(2) Eyes DUAL 470EX & 560EX/515EM & 620EM
(3) Triple Camera only Triple EX & EM
(4) Quad Camera only  single BP
(5) Blank
(6) Reflected light 

• 

Set Reflected light shutter to ON 

and transmitted light shutter to OFF

Transmitted Light Imaging 

The green LED located on the lower right 
side of the microscope base indicates both 
microscope power and that the transmitted 
light shutter is ON. The light intensity control 
knob will attenuate halogen power.

Set the Reflector Turret to position (1) Trans-
mitted Light/Transmitted Polarized light

Set the condenser to H for Bright-field viewing 
or D for Dark-field. Remember, depending on 
the objective chosen, you may have to swing 
out or swing in the condenser front lens. 2.5x 
and 5x the objective front lens should be 
swung out. 

For polarized light imaging a full wave com-
pensator is available.

Summary of Contents for AxioImager A1

Page 1: ...Instructions for Zeiss AxioImager A1 Microscope for Stereology Basic operation instructions as of 10 1 2009 The Stereology Workstation By Jon Ekman...

Page 2: ...fluorescence viewing Press the RL Key Set Reflector Turret to 2 Eyes DUAL 470EX 560EX 515EM 620EM Adjust the Incident Iris Stop Slider until light intensity is adequate Find Focus preferably on a dye...

Page 3: ...crews 3 5 Open luminous field diaphragm 1 to edge of field 6 Adjust contrast using condenser aperture diaphragm slider 4 In most cases adjust aperture diaphragm slider to mark matching the NA of the o...

Page 4: ...oscope and in the software Align for Koehler Illumination Grid Tune Calibration 8 Select Tools Grid Tune Current Lens 9 Tell the software the box size Large grid 250mm Small grid 25mm 10 Drop the anch...

Page 5: ...o ing a pilot study will ensure that quality data is generated by obtaining the best estimates of total cell number Step 1 Set up the subject 1 Number of sections to count De fault is 1 new sections c...

Page 6: ...eing counted NOTE Section Thickness measurements Guard Zones Step 8 Define Dissector Options Set Guard zones so that an over or under estimation of cell totals does not occur Do not count cells that f...

Page 7: ...of Results The first items to appear in the results window are the parameters for your study Marker will show the estimated total cell numbers Do not be alarmed if some of the results are 0 Here is t...

Page 8: ...with setting exposure Gain and other camera specific options 6 Adjust Exposure and white balance using More button in the Camera Set tings window another window will pop up with the basic Olympus Pic...

Page 9: ...3 Plan Apochromat excellent quality cor rect for spherical aberration and corrected for chromatic aberration in red blue and green wavelengths 4 EC Epiplan Enhanced Contrast Univer sal objectives for...

Page 10: ...as the Z drive in the windows environment ITG is equipped with gigabit ethernet and saving to the Z drive is relatively fast Also this permits easy access to the data from any computer in the world u...

Page 11: ...hers 1998 Michalet X Kapanidis A N Laurence T Pinaud F Doose S Pflughoefft M and Weiss S The power and prospects of fluorescence microscopies and spectrosco pies Annu Rev Biophys Biomolec Struct 32 16...

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