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RCF Microscopy Manual 

 

5/2/2017 

Authors Cory Nook and Chaowei Shang 

 

 

 

 

 

Page 14 of 19 

 

 

Click off pseudo colors and right click on the images, a menu containing property will appear. 
Adjustment of images can be done under the property settings. 

 

 

5.2 Save and Export 

 

 

YOU MUST SAVE ALL IMAGES ON THE E: DRIVE IN A FOLDER 
WITH YOUR NAME. DO NOT SAVE ANYTHING ON THE C: 
DRIVE. THESE IMAGE FILES WILL BE PERIODICALLY REMOVED 
BY STAFF, SO YOU MUST BACK UP YOUR FILES ELSEWHERE.  

To save an image, click on the experiment 
heading and select File in the toolbar. The 
format for the proprietary software is .zvi.  
Make sure you save all your images in this 
format
 (when publishing data, many 
journals require the original format of 
images). You may also export in other 
formats but it is recommended to export as 
tiff, later. It is also advised that you save 
at regular intervals to protect your images 
from an unexpected software crash. 

To export files, go to File in the toolbar and 
click on Export.  An export window will 
appear with the base name of the desired 
file in the window heading, shown 
adjacently. Create a name for the file in the 
Base name: section. This will give the initial 
name for the files to be exported and the 
name of the folder to where the files will 
go. The Save in: section gives the file path 
where your files will be saved. You need to 
make sure that these files are going to the 
appropriate folder. The output files at the 
bottom of the window tell you how many 
images will be produced in the desired 
format. If you want a merged image of all 
the channels then you will need to select 
Generate Merged Image(s) below the 
channel selection.  

 

 

TIFF 

Содержание AxioObserver

Страница 1: ...Zeiss AxioObserver with ApoTome Quick Start User Guide AxioVision4 8 LSU Health Sciences Center Shreveport Research Core Facility RCF Microscopy...

Страница 2: ...software Page 8 4 1 Experiment settings Page 9 4 2 Apotome Settings Page 10 4 3 Channel Creation Page 11 4 4 Setting Exposure Page 12 5 Acquiring and saving an experiment Page 13 5 1 Acquire Page 13...

Страница 3: ...as the 10x objective in place This is a safety precaution If the 10x objective is not in place please clean the current objective and manually switch it to the 10x objective To manually switch objecti...

Страница 4: ...supplies to press the button below the yellow sticker with the number 3 See image to the right This will turn on the TFT Display shown adjacently and please wait for this display to fully load before...

Страница 5: ...Y direction of the stage The degree of which the stage will change will depend on which objective is in the light path The image to the right displays the Home screen and we will go over useful infor...

Страница 6: ...if the Control icon on the sidebar is white and not blue An icon is selected if it is white and not selected icons will appear blue as shown to the right The Objectives displayed tell you which one i...

Страница 7: ...bleed through 31 AF 568 EX 565 30 EM 620 60 for Cy 3 Texas Red 17 AF 488 EX 485 20 EM 540 25 for GFP FITC and prevents red emission bleed through 50 Cy 5 EX 640 30 EM 690 50 for Cy 5 and far red dyes...

Страница 8: ...kets along the track The template will hold a variety of shapes If you need a multi well plate template please ask staff Start with DAPI to find and focus on your sample Be aware that fluorescence lig...

Страница 9: ...ws a more detailed view of the options in the Workarea The Microscope selection allows you to adjust parts of the microscope similar to the options in the TFT display All options with a plus sign to t...

Страница 10: ...the ApoTome from the microscope turn off its power supply first Labeled 4 which allows the grid to return to its original position then turn in back ON before you pull it part or all of the way out F...

Страница 11: ...ull up the following window Next to the Experiment tab click on the blue circle icon to select different channels to acquire This icon represents different fluorescent and brightfield channels or mult...

Страница 12: ...rkgroup DAPI selected in the During acquisition part of the Hardware Settings you will get an image of dye excitation similar to DAPI but will be labelled with TRITC Select the arrow the left of the G...

Страница 13: ...exposed pixels Any pixel in red is over exposed and cannot be used in quantification data Also over exposure for long periods of time can damage the camera When you have adjusted the exposure time and...

Страница 14: ...also export in other formats but it is recommended to export as a tiff later It is also advised that you save at regular intervals to protect your images from an unexpected software crash To export f...

Страница 15: ...t the positions of the start and stop points to be past the region of interest This is to ensure that your entire region is in the Z Stack and that none of it is mathematically taken out Make sure tha...

Страница 16: ...n select the All Channels per slice option in the Settings section to allow all the channels to be imaged per slice before the movement to the next part of the Z Stack Personal preference is the reaso...

Страница 17: ...s However the cut view option overlays images on top of each other and causes over saturation of the stacked images To adjust the over saturated images do as follow 1 Turn off the channel coloring 2 s...

Страница 18: ...oftware and log out of your user ID Also please write down the ending bulb time on the signup sheet when you sign out even if you are not turning it off If no one else is signed up to use the system f...

Страница 19: ...es folder of the Programs folder After you have opened a blank Paint document click on Edit at the top of the window and select Paste from the drop down menu This should paste the screen shot and you...

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