6
Running an Xcalibur Experiment by Using ETD
Data Dependent NL MS
3
Experiment
Thermo Scientific
MS/ETD System Getting Started Guide
47
13. In the Tune Plus window, click the
Save
(
) button.
14. Browse to the
drive
:\Xcalibur\methods
folder, and specify a file name.
15. Click
Save
.
Data Dependent NL MS
3
Experiment
To run a Data Dependent NL MS
3
(ETD) experiment
1. Choose
Start > Programs > Xcalibur > Xcalibur
(
).
2. Click the
Instrument Setup
icon (
).
3. In the Available Devices pane, click the
LTQ XL MS
or
LTQ Velos MS
icon to open the
New Method page (
4. Under Select ETD Experiment Type, click
Data Dependent NL MS3 (ETD)
to open
this dialog box (
).
The Initialize Method to Repeat the MS2 Event Using ETD check box is selected as the
default setting.
Figure 35.
Data Dependent NL MS3 dialog box
5. In the Analyze Top N Peaks box, enter the number of top peaks.