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Chapter 3: Maintenance and Component Installation

Optional Front Fan

1. Remove power from the system as described in section 3.1, and remove the left chassis 

cover.

2. Insert four rubber pins through the fan bracket and into the mounting holes in the fan.

3. Pull the rubber pins through the mounting holes of the fan to secure the fan to the 

bracket.

4. Lower the fan into the chassis, aligning the tabs on the bottom of the bracket with 

tabs in the chassis, and the holes at the top of the bracket with the screw holes in the 
chassis.

5. Secure the fan to the chassis using the two screws.

6. Connect the fan cable to the motherboard.

Figure 3-13. Installing the Optional Front Fan

4

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Содержание SuperWorkstation 5039C-T

Страница 1: ...USER S MANUAL Revision 1 0 SuperWorkstation 5039C T...

Страница 2: ...a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instruction manual may cause harmful...

Страница 3: ...lities and the user s manual for your server Supermicro product manuals http www supermicro com support manuals Product drivers and utilities ftp ftp supermicro com Product safety info http www superm...

Страница 4: ...Setup 16 Choosing a Setup Location 16 General Precautions 16 Chapter 3 Maintenance and Component Installation 3 1 Removing Power 17 3 2 Accessing the System 17 3 3 Motherboard Components 19 Processor...

Страница 5: ...ar I O Ports 44 4 4 Jumpers 46 4 5 LED Indicators 48 4 6 Storage Ports 48 Chapter 5 Software 5 1 OS Installation 49 5 2 Driver Installation 50 5 3 SuperDoctor 5 51 Chapter 6 BIOS 6 1 Introduction 52 S...

Страница 6: ...Europe Address Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support superm...

Страница 7: ...ed below Main Parts List Description Part Number Quantity Power supply PWS 502 PQ 1 Fans FAN 0124L4 1 standard 1 optional Optional Active CPU heatsink SNK P0051AP4 1 Optional 2 5 to 3 5 SSD HDD adapte...

Страница 8: ...vertical socket for WIFI Bluetooth Storage Drives Four 3 5 internal drive bays Optional Four 2 5 internal drive bays One U 2 connector shared with M 2 M key 2 via PCH Two M 2 M key 2260 2280 22110 Pow...

Страница 9: ...power on or off to the workstation from the power supply but maintains standby power 2 NIC LED Indicates network activity on the LAN port when flashing 3 HDD LED Indicates activity on a hard drive whe...

Страница 10: ...peripheral 5 25 drives such as a DVD 2 Control Panel Front control panel see preceding page 3 USB Two USB 2 0 ports 4 USB Two USB 3 1 Gen 1 ports 5 Line Out Headphone jack 6 Mic Microphone jack 7 Int...

Страница 11: ...scription 1 Power Supply Fixed module 2 I O Backpanel Rear input output ports see Section 4 3 and figure below 3 PCI E Slots Supports four full height full length PCI E expansion cards Figure 1 3 Chas...

Страница 12: ...X16 PCH SLOT2 PCI E 3 0 X4 PCH SLOT7 PCI E 3 0 X1 SLOT1 PCI 33MHZ JWD1 JTBT1 CPU PCI E_M 2 M2 PCI E_M 2 M1 I SATA5 I SATA3 I SATA1 CMOS CLEAR I SATA4 I SATA2 I SATA0 I SATA7 I SATA6 U 2 1 USB4 5 3 0 U...

Страница 13: ...rt DVI Digital Video Interface CPU_FAN1 2 CPU Fan Headers SYS_FAN1 3 System Fan Headers HD AUDIO Back Panel HD Audio Connectors HDMI Back Panel HDMI port I SATA0 I SATA7 SATA 3 0 Connectors via Intel...

Страница 14: ...Ports USB 4 5 Front Accessible USB 2 0 Header USB 6 7 Back Panel USB 3 1 Gen 2 Ports USB6 Type C USB7 Type A USB 8 Front Accessible USB 3 1 Gen 2 Type C Header USB 9 Front Accessible USB 3 1 Gen 2 Ty...

Страница 15: ...HDMI 2 0a DVI D Digital port 1 PCIe x1 SLOT 7 RJ45 GLAN1 I219LM RJ45 GLAN2 I210 AT ASM1480 PCHPE3 P21 P24 PCIe x4 SLOT 2 ASM1480 U 2 connector M 2 M KEY 2 M 2 M KEY 1 PERICOM PI3EQX1004 ASM1543 USB3...

Страница 16: ...e situated in a clean dust free area that is well ventilated Avoid areas where heat electrical noise and electromagnetic fields are generated Leave enough clearance in front and back of the system to...

Страница 17: ...ot swap components or when replacing a non redundant power supply 1 Use the operating system to power down the system 2 After the system has completely shut down disconnect the AC power cord from the...

Страница 18: ...18 Figure 3 1 Removing the Chassis Covers Caution Except for short periods of time do not operate the workstation without the cover in place The chassis cover must be in place to allow for proper airf...

Страница 19: ...oard without a processor pre installed make sure that the plastic protective socket cover is in place and none of the socket pins are bent otherwise contact your retailer immediately Install the the p...

Страница 20: ...ap 3 Use your thumb and your index finger to hold the CPU at the North center edge and the South center edge of the CPU 4 Align the CPU key that is the semi circle cutouts against the socket keys Once...

Страница 21: ...t may damage your CPU Instead open the load plate again and double check that the CPU is aligned properly CPU properly installed Load lever locked into place 5 Do not rub the CPU against the surface o...

Страница 22: ...om the system 2 Place the heatsink on top of the CPU so that the four mounting screws on the heatsink are aligned with holes on the socket 3 Tighten the screws in the order noted below evenly and grad...

Страница 23: ...ever if you must remove the heatsink follow the instructions below to avoid damage 1 Remove power from the system as described in Section 3 1 2 Disconnect the heatsink fan wires from the CPU fan heade...

Страница 24: ...delines Regarding Mixing DIMMs Populating slots with a pair of DIMM modules of the same type and size results in inter leaved memory which improves memory performance Use memory modules of the same ty...

Страница 25: ...3 Align one end of the DIMM module to the receptive point on the stationary end of the slot and the other end of the DIMM to the locking end of the slot 4 Press down on the stationary end of the slot...

Страница 26: ...1 Remove power from the system as described in section 3 1 and remove the left cover from the chassis 2 Push aside the small clamp that covers the edge of the battery When the battery is released lif...

Страница 27: ...tated Rotating the Drive Cage 1 Remove power from the system as described in section 3 1 and remove the chassis cover 2 Lift the release tab A as shown below 3 Rotate the drive cage outward Note Enter...

Страница 28: ...he drive carrier and slide the carrier out of the drive cage Figure 3 6 Installing Drives in the Primary Drive Cage 2 3 3 3 If you are replacing a drive remove the drive from the carrier by pulling th...

Страница 29: ...3 1 and remove the chassis cover 2 Loosen the thumb screw securing the drive cage to the chassis 3 Slide the drive cage out of the chassis If you are replacing a drive unplug the power and data cables...

Страница 30: ...ing a drive remove the drive from the carrier by pulling the sides of the carrier outwards 6 Insert a new drive into a drive carrier by snapping it in 7 Slide the drive assembly into the drive cage un...

Страница 31: ...e the following figure for that location COM1 JBT1 B3 USB0 1 2 0 JPAC1 JPME2 JF1 JLED1 CPU SLOT6 PCI E 3 0 X16 PCH SLOT2 PCI E 3 0 X4 PCH SLOT7 PCI E 3 0 X1 SLOT1 PCI 33MHZ JWD1 JTBT1 CPU PCI E_M 2 M2...

Страница 32: ...tion Components 1 Remove power from the system as described in section 3 1 and remove the chassis cover 2 The black plastic holder section A should be snapped into the motherboard Prepare the holder I...

Страница 33: ...ection 3 1 2 Remove the front bezel from the chassis by lifting it upwards from the bottom and pulling off the front of the chassis 3 Remove the cover plate from the bezel 4 Install the bracket rail A...

Страница 34: ...are required for installation Installing the Rear Fan 1 Remove power from the system as described in section 3 1 and remove the left chassis cover 2 Insert the four rubber pins into the four mounting...

Страница 35: ...he fan 3 Pull the rubber pins through the mounting holes of the fan to secure the fan to the bracket 4 Lower the fan into the chassis aligning the tabs on the bottom of the bracket with tabs in the ch...

Страница 36: ...ther devices to the power supply 3 Remove the screws securing the power supply to the chassis which are located on the rear of the chassis Save the screws for later use 4 Lift the power supply out of...

Страница 37: ...nstalling PCI E Expansion Cards Begin by removing power from the system as described in section 3 1 1 Remove power from the system as described in section 3 1 and remove the left chassis cover 2 Remov...

Страница 38: ...ower connections supply the motherboard and several more supply for onboard devices Main Power Connector The primary power supply connector JPW1 meets the ATX SSI EPS 12V specification Important To pr...

Страница 39: ...JPW2 must also be connected to the power supply This connector is used to power the processor s 12V 8 pin Power Pin Definitions Pin Definition 1 4 Ground 5 8 12V Required Connection Speaker Buzzer Hea...

Страница 40: ...ns Pin Definition Pin Definition 1 NC 2 NC 3 GND 4 Data 5 Load 6 GND 7 Clock 8 NC NC No Connection I SGPIO 1 2 I SGPIO1 I SATA 3 0 Ports 0 3 I SGPIO2 I SATA 3 0 Ports 4 7 Standby Power The 5V Standby...

Страница 41: ...wo M 2 solid state drives M 2 replaces mini PCI E and mSATA It allows for a greater variety of card sizes increased functionality and spatial efficiency The M 2 sockets support 3 0 x4 32 Gb s card in...

Страница 42: ...ound Key Power On LED Control signal HDD LED Activity signal NIC1 LED Ground NIC2 LED Ground OH Fan Fail LED Ground Power Fail LED Ground Ground Ground 2 1 20 19 Power Button Pin Definitions JF1 Pin D...

Страница 43: ...LED 8 OH Fan Fail LED LAN1 LAN2 LED Pin Definitions JF1 Pin Definition 9 NIC2 Activity LED 10 NIC2 Link LED 11 NIC1 Activity LED 12 NIC1 Link LED NIC1 NIC2 LAN1 LAN2 The NIC Network Interface Control...

Страница 44: ...and 20 of JF1 NMI Button Pin Definitions JF1 Pin Definition 19 Control 20 Ground 4 3 Input Output Ports Rear I O Ports Figure 4 2 Rear I O Ports Rear I O Ports Description Description Description Desc...

Страница 45: ...bit Ethernet ports each with two LEDs showing activity and speed See Section 4 5 for details USB Ports There are two USB 3 1 Gen 1 ports USB2 3 and two USB 3 1 Gen 2 ports USB6 7 CEN LFE Out and Surro...

Страница 46: ...d Connector Pins Jumper Setting 3 2 1 3 2 1 CMOS Clear JBT1 is used to clear CMOS which will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally clear...

Страница 47: ...ngs Jumping pins 2 3 will generate a non maskable interrupt signal for the application that hangs Watch Dog must also be enabled in BIOS The default setting is Reset Note When Watch Dog is enabled the...

Страница 48: ...ported by the Intel C246 PCH chip are located on the motherboard They support RAID 0 1 5 and 10 Note For more information on the SATA HostRAID configuration refer to the Intel SATA HostRAID user s gui...

Страница 49: ...the system Note for older legacy OS s please use a method to slipstream the drivers 3 Select the partition on the drive in which to install Windows 4 Browse the USB folder for the proper driver files...

Страница 50: ...pear Another option is to go to the Supermicro website at http www supermicro com products Find the product page for your motherboard here where you may download individual drivers and utilities to yo...

Страница 51: ...ent Protocol SNMP SuperDoctor 5 comes in local and remote management versions and can be used with Nagios to maximize your system monitoring needs With SuperDoctor 5 Management Server SSM Server you c...

Страница 52: ...eft frame displays options can be configured by the user These are blue When an option is selected it is highlighted in white Settings printed in Bold are the default values In the left frame a indica...

Страница 53: ...n to change the system date and time Highlight System Date or System Time using the arrow keys Enter new values using the keyboard Press the Tab key or the arrow keys to move between fields The date m...

Страница 54: ...ure default settings Boot Feature Fast Boot This feature enables the system to boot with a minimal set of required devices to launch This has no effect on BBS boot options The options are Disabled or...

Страница 55: ...w the system to resume its last power state before a power loss The options are Stay Off Power On and Last State Power Button Function This feature controls how the system shuts down when the power bu...

Страница 56: ...he L2 cache to improve CPU performance The options are Disabled or Enabled Adjacent Cache Line Prefetch Select Enabled for the CPU to prefetch both cache lines for 128 bytes as comprised Select Disabl...

Страница 57: ...EMTTM is also enabled The options are Disabled or Enabled Package Power Limit MSR Lock This feature enables Package Power Limit locking If this is enabled a reset will be required to unlock the regist...

Страница 58: ...When this feature is enabled the CPU will conditionally undemote from demoted Packaged Package C State Un Demotion The options are Disabled or Enabled CState Pre Wake Use this feature to enable the C...

Страница 59: ...led 1 Enabled WARM HOT and 2 Enabled HOT Closed Loop Therm Manage This feature enables Closed Loop Thermal management The options are Disabled or Enabled Graphics Configuration Primary Display This fe...

Страница 60: ...Disabled or Enabled PAVP Enable This feature enables PAVP support The options are Disabled or Enabled Cdynmax Clamping Enable This feature enables Cdynmax Clamping The options are Disabled or Enabled...

Страница 61: ...range is 0 255 The default is 75 SLOT4 Power Limit Scale This feature controls the slot power limit scale The options are 1 0x 0 1x 0 01x and 0 001x Program PCIe ASPM after OpROM This feature enables...

Страница 62: ...he options are Disabled or Enabled PCH IO Configuration PCI Express Configuration DMI Link ASPM Control This feature enables the control of Active State Power Management ASPM on the SA side of the DMI...

Страница 63: ...C This feature enables Downstream Port Containment DPC The options are Disabled or Enabled EDPC This feature enables rootport Extension for Downstream Port Containment The options are Disabled or Enab...

Страница 64: ...d 0 0 2 0 in 0 1 increments NCT6796D Super IO Configuration Serial Port 1 Configuration Serial Port 1 This feature will enable Serial Port 1 COM1 Click to check the box to enable Serial Port 1 The def...

Страница 65: ...A lower transmission speed may be required for long and busy lines The options are 9600 19200 38400 57600 and 115200 bits per second COM1 Data Bits Use this feature to set the data transmission size...

Страница 66: ...which is a terminal emulator designed for the Windows OS The options are VT100 LINUX XTERMR6 SCO ESCN and VT400 COM1 Redirection After BIOS POST Use this feature to enable or disable legacy Console R...

Страница 67: ...mark as a parity bit to be sent along with the data bits Select Space to add a Space as a parity bit to be sent with your data bits The options are None Even Odd Mark and Space SOL Stop Bits A stop b...

Страница 68: ...d Checked Enabled If the item above set to Enabled the following items will become available for configuration AMT SOL Console Redirection Settings AMT SOL Terminal Type This feature allows the user t...

Страница 69: ...ed Disabled or Checked Enabled AMT SOL Recorder Mode Select Enabled to capture the data displayed on a terminal and send it as text messages to a remote server The options are Unchecked Disabled or Ch...

Страница 70: ...d ASCII Character Set Select VT UTF8 to use UTF8 encoding to map Unicode characters into one or more bytes The options are ANSI VT100 VT100 and VT UTF8 EMS Bits per second Use this feature to set the...

Страница 71: ...s option is enabled it will perform Staggered Spin Up on any drive this option is activated The settings are Disabled or Enabled SATA Device Type Use this feature to identify the type of HDD that is c...

Страница 72: ...ts in order to provide advanced warning of possible system failures The options are Disabled or Enabled WatchDog This feature enables the WatchDog Timer The options are Disabled or Enabled OS Timer If...

Страница 73: ...sets the MEBx password to its default The options are Unchecked Disabled or Checked Enabled MEBx Resolution Settings Non UI Mode Resolution This feature controls the resolution for non UI text mode Th...

Страница 74: ...led PCIe PCI PnP Configuration Video This feature controls which option ROM to execute for the Video device The options are Do Not Launch UEFI and Legacy PCI PERR SERR Support This feature enables PCI...

Страница 75: ...Disabled or Enabled If this feature is enabled the two features below are available Ipv4 PXE Support Select Enabled to enable Ipv4 PXE Preboot Execution Environment for boot support If this feature is...

Страница 76: ...e Changing the setting will reboot the computer The options are Disabled or Enabled Pending operation This feature schedules an operation for an installed security device Changing the setting will reb...

Страница 77: ...elect Yes Next Reset data in the event log will be erased upon next system reboot Select Yes Every Reset data in the event log will be erased upon every system reboot The options are No Yes Next reset...

Страница 78: ...a numeric value The default value is 1 METW The Multiple Event Time Window METW defines the number of minutes that must pass between duplicate log events before MECI is incremented This is in minutes...

Страница 79: ...ge to configure Security settings Create Administrator and User passwords Using ONLY an Administrator password limits access to BIOS setup Using ONLY a User password will lock unauthorized users from...

Страница 80: ...ot mode The options are LEGACY UEFI and DUAL FIXED BOOT ORDER Priorities Use this feature to set the boot order priority The number of boot options shown is dependent on the boot mode selected above D...

Страница 81: ...system Save Changes This option will save the changes but will remain in setup mode Discard Changes This option will discard the changes but will remain in setup mode Restore Defaults This option will...

Страница 82: ...on 5039C T User s Manual 82 Boot Override IBA CL Slot 00FE v0113 This feature force boots IBA CL Slot 00FE v0113 This will restart the system UEFI Built in EFI Shell This feature force boots the Built...

Страница 83: ...orresponding beep codes encountered by users BIOS Error Beep POST Codes Beep Code Error Message Description 1 short Refresh Circuits have been reset Ready to power up 5 short 1 long Memory error No me...

Страница 84: ...or assistance Only certified technicians should attempt to install or configure components Read this appendix in its entirety before installing or configuring components in the Supermicro chassis Thes...

Страница 85: ...o considere los riesgos de la corriente el ctrica y familiar cese con los procedimientos est ndar de prevenci n de accidentes Al final de cada advertencia encontrar el n mero que le ayudar a encontrar...

Страница 86: ...ken dient u zich bewust te zijn van de bij een elektrische installatie betrokken risico s en dient u op de hoogte te zijn van de standaard procedures om ongelukken te voorkomen Gebruik de nummers aan...

Страница 87: ...mentaci n Attention Avant de brancher le syst me sur la source d alimentation consulter les directives d installation Circuit Breaker Waarschuwing Raadpleeg de installatie instructies voordat u het sy...

Страница 88: ...tes del edificio Aseg rese de que el dispositivo de protecci n no sea superior a 250 V 20 A Attention Pour ce qui est de la protection contre les courts circuits surtension ce produit d pend de l inst...

Страница 89: ...e energ a y del cable el ctrico quitado de los m dulos de fuente de alimentaci n antes de tener acceso el interior del chasis para instalar o para quitar componentes de sistema Attention Le syst me do...

Страница 90: ...abels aangesloten op de voeding en van de behuizing te verwijderen Equipment Installation Warning Only trained and qualified personnel should be allowed to install replace or service this equipment Wa...

Страница 91: ...tention Il est vivement recommand de confier l installation le remplacement et la maintenance de ces quipements des personnels qualifi s et exp riment s Warning This unit is intended for installation...

Страница 92: ...a una de estas reas mediante la utilizaci n de una herramienta especial cerradura con llave u otro medio de seguridad Attention Cet appareil doit tre install e dans des zones d acc s r serv s L acc s...

Страница 93: ...mblable ou quivalent recommand e par le fabricant Jeter les piles usag es conform ment aux instructions du fabricant Advertencia Existe peligro de explosi n si la bater a se reemplaza de manera incorr...

Страница 94: ...aanbevolen wordt Gebruikte batterijen dienen overeenkomstig fabrieksvoorschriften afgevoerd te worden Redundant Power Supplies Warning This unit might have more than one power supply connection All co...

Страница 95: ...mloos te maken Advertencia Puede que esta unidad tenga m s de una conexi n para fuentes de alimentaci n Para cortar por completo el suministro de energ a deben desconectarse todas las conexiones Atten...

Страница 96: ...dvertencia Cuando el sistema est en funcionamiento el voltaje del plano trasero es peligroso Tenga cuidado cuando lo revise Attention Lorsque le syst me est en fonctionnement des tensions lectriques c...

Страница 97: ...umplir con las normas de electricidad locales y nacionales Backplane Waarschuwing Een gevaarlijke spanning of energie is aanwezig op de backplane wanneer het systeem in gebruik is Voorzichtigheid is g...

Страница 98: ...ale elektriciteitsvoorschriften Warnung Die Entsorgung dieses Produkts sollte gem allen Bestimmungen und Gesetzen des Landes erfolgen Warning Ultimate disposal of this product should be handled accord...

Страница 99: ...recyclage de ce produit sont g n ralement soumis des lois et ou directives de respect de l environnement Renseignez vous aupr s de l organisme comp tent Hot Swap Fan Warning Warning Hazardous moving...

Страница 100: ...estornilladores y todos los objetos lejos de las aberturas del ventilador Attention Pieces mobiles dangereuses Se tenir a l ecart des lames du ventilateur Il est possible que les ventilateurs soient t...

Страница 101: ...UL oder CAS zertifizierten Kabeln mit UL CSA gekennzeichnet an Ger ten oder Produkten die nicht mit Supermicro gekennzeichnet sind AC AC UL CSA UL CSE Supermicro Supermicro UL CSA UL CSA Supermicro U...

Страница 102: ...r le code pour tous les autres appareils lectriques sauf les produits d sign s par Supermicro seulement AC AC UL CSA UL CSA Supermicro UL CSA UL CSA Supermicro Advertencia Cuando instale el producto u...

Страница 103: ...Aansluitmethode deze moet altijd voldoen aan de lokale voorschriften en veiligheidsnormen inclusief de juiste kabeldikte en stekker Het gebruik van niet geschikte Kabels en of Adapters kan een storin...

Страница 104: ...2 M key 1 via PCH One PCI E 3 0 x1 via PCH One PCI 32bit 5V One M 2 E key vertical socket for WIFI Bluetooth Motherboard X11SCA ATX form factor 12 x 9 6 30 5cm x 24 4cm Chassis SC732D4 500B Mid size t...

Страница 105: ...1 Other VCCI CISPR 32 and AS NZS CISPR 32 Environmental Directive 2011 65 EU and Directive 2012 19 EU Safety CSA EN IEC UL 60950 1 Compliant UL or CSA Listed USA and Canada CE Marking Europe Perchlora...

Страница 106: ...p consists of a recovery BIOS block and a main BIOS block a main BIOS image The boot block contains critical BIOS codes including memory detection and recovery codes for the user to flash a new BIOS i...

Страница 107: ...large because it contains too many folders and files To perform UEFI BIOS recovery using a USB attached device follow the instructions below 1 Using a different machine copy the Super ROM binary imag...

Страница 108: ...e to proceed with BIOS recovery follow the procedures below 4 When the screen shown above displays use the arrow keys to select the item Proceed with flash update and press the Enter key You will see...

Страница 109: ...Appendix D UEFI BIOS Recovery 109 5 After the BIOS recovery process is completed press any key to reboot the system...

Страница 110: ...sence Condition of the Restricted Substances Marking Equipment name Type designation Type Restricted substances and its chemical symbols Note 1 Exceeding 0 1 wt and exceeding 0 01 wt indicate that the...

Страница 111: ...Appendix E 111 100 240VAC 60 50Hz 7 3 5A 150 3...

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