Newport iServer MicroServer iTHX-M, Operator'S Manual

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Chapter 6 | Working with Mapping Data
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CHECKING FOR SAMPLE MISMATCHES
The report is able to use sample attribute information to identify
sample mismatches. The same steps are used as for the sample match
report, and in addition, the sample attributes need to be specified in
Step 3.
To run a Sample Mismatch report:
Steps 1, 2, and 4 are the same as for the Sample Match Report.
• Drag and drop .chp files from the Data Tree. (see page 211) (Same as
Step 1 in Sample Match Report.)
• Specify the mismatch threshold for calling matched samples. (see
page 212)
(Same as Step 2 in Sample Match Report.)
• Specify sample template attributes to call sample mismatches. (see below)
• Specify output file name. (see page 212) (Same as Step 3 in Sample
Match Report.)
Specify sample template attributes to call sample mismatches.
In this step you specify the attributes used to identify the sample ID
and the gender of the sample donor
(Figure 6.36) .
To use the Mismatch Report tool to identify sample and gender
mismatches, you must:
• Assign a sample template with pedigree attributes to the
samples (see
page 182)
• Assign sample identifier for each .chp file (see
page 185)
Figure 6.36
Select sample attributes
GTYPE_manual.book Page 219 Wednesday, August 2, 2006 11:31 AM