background image

5.  An alternative procedure at this step is to peel the paper, with the gel

attached, from the glass plate upon which it rests. Beginning at one
end of the gel, slowly lift and peel back the paper with the gel attached.
As before, a stream of water from a wash bottle can be sprayed at any
spot to aid separation of the gel from the glass plate.

6.  Place the gel resting on the Whatman, 3MM paper flat on a lab bench.

7.  Wearing gloves, cut a piece of nylon membrane the size of the gel and

blotting paper. Briefly (but thoroughly) wet the membrane in 0.5 x
TBE in a shallow tray, being careful not to crease the membrane.
Holding the membrane by two corners, allow the excess liquid to drip
from the membrane into the tray.

1. Wearing gloves, cut the membrane to the size of the gel and blotting

paper.

2, Mark the membrane, to indicate the side to which the samples will be

on. This is important in the event that any successive probe is negative,
and to indicate sample orientation. This can be done by either clipping
a comer of the membrane or using a ball point pen. Clip the same
comer until you retire.

3. Wet the membrane according to its manufactures recommendations,

followed by a quick equilibration in transfer buffer. It is often helpful
to have all the filter paper and membranes sitting in transfer buffer as
you start to build the blotting sandwich.

4. With this device, the transfer is in the upward direction as shown in

the figure below, and the blotting sandwich is built upward, upon the
mirrored stainless steel plate of the bottom half of the blotter.

5. Lay three filter pads, one after the other down. Each should be soaking

wet with buffer. In fact, the lower chamber may filled with buffer as
you build the blotting sandwich.

6. Add a few mL of buffer to the filter pad, and gently layer the gel.

Beginning at one end of the filter paper, align the gel with the paper's
edge, and slowly lower the other end, driving out any bubble.

7. Wearing gloves, gently smooth out any bubbles by forcing them to the

closest edge of the gel. Test tubes and pipettes many also be used for
this purpose.

2-4

Semidry Electroblotter

Thermo Scientific

Section 2

Setting Up

DNA Gels (continued)

Gel Sandwich

Assembly

Содержание OWL HEP-1

Страница 1: ...Semidry Electroblotter Models HEP 1 and HEP 3 Operating and Maintenance Manual 7007332 Rev 0 Visit us online to register your warranty www thermoscientific com warranty...

Страница 2: ...Thermo Scientific MANUAL NUMBER 7007332 0 5 1 12 Transfer to Marietta was The Panther 3 2003 ccs REV ECR ECN DATE DESCRIPTION By Preface Semidry Electroblotter i...

Страница 3: ...ngs found on the lower buffer chamber s This system is designed to meet IEC 1010 1 safety standards IEC 1010 1 is an internationally accepted electrical standard for laboratory instruments Statement o...

Страница 4: ...nt that has been put on the market after 13 August 2005 This product is required to comply with the European Union s Waste Electrical Electronic Equipment WEEE Directive 2002 96 EC It is marked with t...

Страница 5: ...can fill your needs for spare or replacement parts or provide you with on site service We can also provide you with a quotation on our Extended Warranty for your Thermo Scientific products Whatever Th...

Страница 6: ...wich Assembly 2 4 Using the System 3 1 Running the Blot 3 1 Transfer settings 3 1 Running Conditions 3 2 Factors That Affect Transfer Efficiency 3 2 Troubleshooting 4 1 Technical Tips 5 1 Semidry Blot...

Страница 7: ......

Страница 8: ...nsfer at low voltages without external cooling systems Plate electrodes also provide a uniform electric field for efficient even transfers Before starting unpack the unit and inventory your order If a...

Страница 9: ...Heavy Duty Knobs HEP 1 3 HEP 3 4 Power Supply Leads Lid Anode Cathode Base Figure 1 1 Exploded View Table 1 1 Parts List 1 base with stainless steel cathode 1 lid with platinum titanium anode 1 attac...

Страница 10: ...modifiers often use in protein transfer buffer These components however are antithetical in their effects both in terms of movement and adsorption Methanol restricts protein movement from the gel but...

Страница 11: ...l transfer protocol following separately DNA RNA If these gels were not run in IXTBE they should be equilibrated for 10 minutes in this buffer Protein Gels After electrophoresis remove the gel assembl...

Страница 12: ...f the bottom plate In this case flip the gel sandwich over and follow the same procedure 4 Once the plates are separated remove the second side spacer along with any extraneous bits of acrylamide arou...

Страница 13: ...clipping a comer of the membrane or using a ball point pen Clip the same comer until you retire 3 Wet the membrane according to its manufactures recommendations followed by a quick equilibration in t...

Страница 14: ...the filter stack 9 Add a few mL of buffer to the gel and gently layer the membrane as you did the gel 10 Repeat with three more pieces of filter paper 11 Holding the stack drain off all excess buffer...

Страница 15: ......

Страница 16: ...transfer down to say coincide with the setting up of a probe simply decrease the current mA to match the added time you require mA hr Std setting mA hr New setting Alternatively the current can be inc...

Страница 17: ...r efficient transfer of a specific molecule Factors That Affect Transfer Efficiency Protein HEP 3 Sequencing gel see HEP 1 set tings for other size gels on this unit DNA RNA Filter Paper FP 1 20 x 20c...

Страница 18: ...m and anode on top This means that an upward transfer is being performed rather than downward Follow the instructions care fully when assembling the transfer sandwich The pH of the transfer buffer is...

Страница 19: ...Alcohol was not used to prewet the membrane PVDF is hydrophobic and requires a short soak in methanol prior to transfer Air spaces are interfering with contact between the gel and the membrane Roll a...

Страница 20: ...delines are HEP l 2mA cm2 of gel for 1 hour These guidelines are just a starting point and exact conditions have to be determined Different kinds of blotting Western Blotting is a blotting method for...

Страница 21: ...Eckerskorn Christoph and Lottspeich Friedrich Structural characterization of blotting membranes and the influence of membrane parameters for electroblotting and subsequent amino acid sequence analysi...

Страница 22: ...with a useful reference list It also includes a very useful troubleshooting guide for nucleic acid and protein blots with pictures of the problems description of symptoms and proposed solutions 1X Tr...

Страница 23: ...Electroblotting This buffer is used with the HEP 1 Semidry Electroblotter Final 1 X composition Anode 1 Buffer 0 3M Tris Base 20 MeOH pH 10 4 Anode 2 Buffer 0 025M Tris Base 20 MeOH pH 10 4 Cathode B...

Страница 24: ...0 8M Tris 1 18M borate 24mM EDTA pH 8 3 CAPS Buffer pH 11 This buffer can be used to improve transfer of some proteins 10mm CAPS 3 cyclohexylamino 1 1 0 methanol propanesulfuric acid adjust to pH 11 w...

Страница 25: ......

Страница 26: ...use ethanol or other organic solvents to clean these products Do not autoclave bake or microwave your unit Temperatures over 50 C can damage acrylic s Note If an RNase free electrophoresis system is d...

Страница 27: ...S Phenol 5 solution U Hydroxide 10 S Glycerine Heptane commercial grade S Soap solution Ivory S Ammonium Hydroxide concentrate S Hexane S Sodium carbonate 2 S Aniline D Hydrochloric acid 10 S Sodium...

Страница 28: ...f 100 FP 3 Blotting Filter Paper 9cm x 9cm pkg of 100 FP 4 Blotting Filter Paper 10cm x 10cm pkg of 100 FP 6 Blotting Filter Paper 12cm x 16cm pkg of 100 FP 7 Power Supply Leads PSL 5 Buffer Kit recom...

Страница 29: ......

Страница 30: ...t beyond the original warranty period The Technical Services Department must give prior approval for return of any component or equipment At Thermo s option all non conforming parts must be returned t...

Страница 31: ...or to the component part beyond the original warranty period The Technical Services Department must give prior approval for return of any component or equipment At Thermo s option all non conforming p...

Страница 32: ...Thermo Fisher Scientific 401 Millcreek Road Marietta Ohio 45750 United States www thermofisher com...

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