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Chapter 4: Motherboard Connections

4.2 Headers and Connectors

Fan Headers

There are five fan headers on the motherboard. These are 4-pin fan headers; pins 1-3 are

backward compatible with traditional 3-pin fans. The onboard fan speeds are controlled by
Thermal Management. The use of 4-pin fans is recommended to use fan speed control.

Required Connection

+12V 8-pin Power

Pin Definitions

Pin#

Definition

1 - 4 Ground
5 - 8 +12V

Processor Power Connector

JPW2 must also be connected to the power supply. This connector is used to power the
processor.

Fan Header

Pin Definitions

Pin#

Definition

Ground (Black)

2.5A/+12V (Red)

Tachometer

PWM_Control

Front Panel Audio Header (AUDIO FP)

The 10-pin Audio header allows you to connect the motherboard to a front panel audio control
panel, if needed.

10-pin Audio Header

Pin Definitions

Pin#

Definition

Pin#

Definition

Microphone (Left)

Audio Ground

Microphone (Right)

Audio Detect

Line 2 (Right)

Ground

Jack Detect

Key

Line 2 (Left)

Ground

Содержание SuperWorkstation 5039A-IL

Страница 1: ...USER S MANUAL Revision 1 0a SuperWorkstation 5039A IL...

Страница 2: ...is operated in a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instruction manual may...

Страница 3: ...necessary drivers utilities and the user s manual for your server Supermicro product manuals http www supermicro com support manuals Product drivers and utilities ftp ftp supermicro com Product safety...

Страница 4: ...6 Choosing a Setup Location 16 General Precautions 16 Chapter 3 Maintenance and Component Installation 3 1 Removing Power 18 3 2 Accessing the System 18 3 3 Motherboard Components 19 Processor and Hea...

Страница 5: ...icators 48 Chapter 5 Software 5 1 OS Installation 49 Installing the Windows OS for a RAID System 49 Installing Windows to a Non RAID System 49 5 2 Driver Installation 50 5 3 SuperDoctor 5 51 Chapter 6...

Страница 6: ...Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Technic...

Страница 7: ...ipped in and note if it was damaged in any way If any equipment appears damaged please file a damage claim with the carrier who delivered it Decide on a suitable location for the rack unit that will h...

Страница 8: ...Gen Core i7 i5 i3 Pentium and Celeron processors Socket Type LGA 1151 H4 Memory Four 288 pin DIMM slots to support up to 64 GB of unbuffered ECC non ECC DDR4 2133MHz SDRAM Chipset C236 Express chipset...

Страница 9: ...o perform many maintenance tasks you must also unplug system before servicing 7 Line Out Line out jack 8 Mic Microphone jack Figure 1 1 Control Panel View 1 4 Server Chassis Features Control Panel The...

Страница 10: ...es such as a DVD ROM or HDD 2 Control Panel Front control panel see preceding page 3 Internal HDD Cage behind bezel Supports four 3 5 hard drives in a rotatable cage Figure 1 2 Chassis Front View Fron...

Страница 11: ...80Plus Bronze Level power supply p n PWS 502 PQ 2 I O Backpanel Rear I O ports see Section 4 3 3 PCI Slots Supports seven full height full length PCI expansion cards Figure 1 3 Chassis Rear View Rear...

Страница 12: ...JTPM1 JL1 JHD_AC1 JSTBY1 COM1 COM2 I SATA7 I SATA6 I SATA5 I SATA3 I SATA1 I SATA4 I SATA2 I SATA0 I SGPIO2 I SGPIO1 J23 XDP1 LEDM1 LED4 LED1 LED3 FAN5 FAN4 FAN2 FAN1 FAN3 JI2C1 JI2C2 JPAC1 JPL2 JPG1...

Страница 13: ...OM1 Serial Port Header Fan1 Fan4 FanA System CPU Fan Headers I SATA0 I SATA5 Intel PCH SATA Serial ATA 3 0 Ports I SGPIO 1 2 Serial Link General Purpose I O Headers JD1 Speaker Power LED Indicator JF1...

Страница 14: ...E PCH Slot 5 PCI Express 3 0 x4 in x8 Slot SP1 Internal Speaker Buzzer USB 0 1 Back Panel USB 2 0 Ports USB 2 3 USB 4 5 Front Accessible USB 2 0 Headers USB 6 7 Back Panel USB 3 0 Ports USB 8 9 Front...

Страница 15: ...GA1151 PCH DDR4 DMI3 DDR4 2133 2133 B 1 B 2 A 2 A 1 PCIe3 0 x4 in x8 PCIe 3 0 x4 in x8 PCI E x4 Gen3 PCI E x4 Gen3 SATA 6 0 Gb S USB 3 0 USB 2 0 USB3 0 USB2 0 TPM Header Debug Card BIOS MUX LPC SPI SP...

Страница 16: ...on Choosing a Setup Location The system should be situated in a clean dust free area that is well ventilated Avoid areas where heat electrical noise and electromagnetic fields are generated Leave enou...

Страница 17: ...tation Setup 17 Allow any drives and power supply modules to cool before touching them When not servicing always keep the front door of the rack and all covers panels on the servers closed to maintain...

Страница 18: ...n the system 2 After the system has completely shut down disconnect the AC power cord from the power strip or outlet 3 Disconnect the power cord from the power supply module 3 2 Accessing the System T...

Страница 19: ...n Intel certified multi directional heatsink only When receiving a motherboard without a processor pre installed make sure that the plastic CPU socket cap is in place and none of the socket pins are b...

Страница 20: ...r into the Socket Load Lever Load Plate Bottom Edge Top Edge 3 Use your thumb and your index finger to hold the edges of the processor Align the CPU key the semi circle cutouts with the socket keys 4...

Страница 21: ...the X11SAE Note You should apply thermal grease to the heatsink if it has not already been pre applied 1 Place the heatsink on top of the CPU so that the four mounting holes are aligned with those on...

Страница 22: ...the heatsink screws from the motherboard in the sequence as show in the figure above 2 Hold and gently pivot the heatsink back and forth to loosen it from the CPU Do not use excessive force when disl...

Страница 23: ...nk Bracket Figure 3 7 Removing the Heatsink Note Wait for the heatsink to cool down before removing it 4 Clean the surface of the CPU and the heatsink to get rid of the old thermal grease Reapply the...

Страница 24: ...he receptive point on the memory slot and the notches on both ends of the module with the receptive points on the slot 3 With your thumbs on both ends of the module press it straight down into the slo...

Страница 25: ...DIMMB1 Possible System Memory Allocation Availability System Device Size Physical Memory Remaining with 4GB System Memory Firmware Hub flash memory System BIOS 1 MB 3 99 Local APIC 4 KB 3 99 Area Res...

Страница 26: ...board Replacing the Battery Begin by removing power from the system as described in section 3 1 1 Push aside the small clamp that covers the edge of the battery When the battery is released lift it ou...

Страница 27: ...escribed in section 3 2 1 To rotate the hard drive cage lift the release tab A as shown in Figure 3 11 2 Rotate the hard disk drive cage B outward Installing Hard Drives to the Hard Drive Cage 1 Press...

Страница 28: ...SuperWorkstation 5039A IL User s Manual 28 Figure 3 12 Installing Drives in the Hard Drive Cage Figure 3 11 Rotating the Hard Drive Cage Release Tabs 2 3 1 3 Release Tab A HDD Cage B 2...

Страница 29: ...each hard drive carrier may be secured to the exterior of the hard drive cage using one optional screw 6 Rotate the hard drive cage 90 degrees inward returning it to the closed operational position i...

Страница 30: ...move the hard drive from the hard drive carrier 7 Insert the new hard drive into the hard drive carrier 8 Insert the hard drive carrier into the hard drive cage sliding it towards the back of the the...

Страница 31: ...evice 1 Remove the front bezel from the chassis by lifting it upwards from the bottom and pulling off the front of the chassis 2 Remove the cover plate from the 3 5 device slot on the front of the cha...

Страница 32: ...er supply fan fails the power supply itself must be replaced Installing the Rear Exhaust Fan Begin by removing power from the system as described in section 3 1 and remove the chassis cover as describ...

Страница 33: ...ough the front fan bracket and into the mounting holes in the front fan 2 Pull the rubber pins through the mounting holes of the system fan to secure the fan to the chassis 3 Lower the fan into the ch...

Страница 34: ...cribed in section 3 2 1 Disconnect the cables from the serverboard to the power supply 2 Remove the screws securing the power supply to the chassis which are located on the rear of the chassis Set the...

Страница 35: ...included with the power supply 24 pin Primary ATX Power JPW1 8 pin Processor Power JPW2 Main ATX Power Connector The primary power connector JPW1 meets the ATX SSI EPS 12V specification You must also...

Страница 36: ...finition 1 4 Ground 5 8 12V Processor Power Connector JPW2 must also be connected to the power supply This connector is used to power the processor Fan Header Pin Definitions Pin Definition 1 Ground B...

Страница 37: ...nicate with the enclosure management chip in the system SGPIO Header Pin Definitions Pin Definition Pin Definition 1 NC 2 NC 3 Ground 4 Data 5 Load 6 Ground 7 Clock 8 NC Disk On Module Power Connector...

Страница 38: ...le TPM Port 80 header is located at JTPM1 to provide TPM support and Port 80 connection Use this header to enhance system performance and data security Onboard Power LED JLED1 An onboard Power LED hea...

Страница 39: ...on The Power Button connection is located on pins 1 and 2 of JF1 Momentarily contacting both pins will power on off the system This button can also be configured to function as a suspend button with a...

Страница 40: ...le on the right for pin definitions NIC1 NIC2 LAN1 LAN2 The NIC Network Interface Controller LED connection for LAN port 2 and LAN port 1 are located on pins 9 10 and 11 12 of JF1 respectively Attach...

Страница 41: ...ons JF1 Pin Definition 13 3 3V Standby 14 HDD Active Data Cables The data cables in the system have been carefully routed to maintain airflow efficiency If you disconnect any of these cables take care...

Страница 42: ...includes a total of eight SATA 3 0 ports I SATA0 7 are supported by the Intel C236 Express PCH chip These SATA ports support RAID 0 1 5 and 10 Rear I O Ports Description Description Description 1 USB1...

Страница 43: ...HDMI capable display using a single HDMI cable not included DVI D Port A DVI D port is located on the I O backpanel Use this port to connect to a compatible DVI Digital Visual Interface display VESA...

Страница 44: ...da_SSRX 14 SuperSpeed Receiver 6 Stda_SSRX 15 Differential Pair 7 GND_DRAIN 16 Ground for Signal Return 8 Stda_SSTX 17 SuperSpeed Transmitter 9 Stda_SSTX 18 Differential Pair Type A USB 10 USB 3 0 Pin...

Страница 45: ...ed Connector Pins Jumper Setting 3 2 1 3 2 1 CMOS Clear JBT1 is used to clear CMOS which will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally clea...

Страница 46: ...llows you to enable or disable the onboard High Definition audio support The default setting is Enabled LAN1 2 Enable Disable Change the setting of jumper JPL1 and JPL2 to enable or disable the LAN1 a...

Страница 47: ...re to disable it Watch Dog Jumper Settings Jumper Setting Definition Pins 1 2 Reset Pins 2 3 NMI Manufacturer Mode Select Close pins 2 and 3 of jumper JPME2 to bypass SPI flash security and force the...

Страница 48: ...Onboard Power LED Indicator LED State LED Color Definition Off System off On System on Onboard Standby Power LED Indicator LED State LED Color Definition Off Power supply is off hard switch On Power s...

Страница 49: ...SB port on the system Note for older legacy OS s please use a method to slipstream the drivers 3 Select the partition on the drive in which to install Windows 4 Browse the USB folder for the proper dr...

Страница 50: ...er option is to go to the Supermicro website at http www supermicro com products Find the product page for your motherboard here where you may download individual drivers and utilities to your hard dr...

Страница 51: ...es in local and remote management versions and can be used with Nagios to maximize your system monitoring needs With SuperDoctor 5 Management Server SSM Server you can remotely control power on off an...

Страница 52: ...uch as F1 F2 etc Each main BIOS menu option is described in this manual The Main BIOS screen has two main frames The left frame displays all the options that can be configured Grayed out options canno...

Страница 53: ...ighlight System Date or System Time using the arrow keys Enter new values using the keyboard Press the Tab key or the arrow keys to move between fields The date must be entered in Day MM DD YYYY forma...

Страница 54: ...g may make the system unstable When this occurs revert to the default to the manufacture default settings Boot Feature Quiet Boot Use this feature to select the screen display between the POST message...

Страница 55: ...reboot the system from a specified boot device after its initial boot failure The options are Disabled Legacy Boot and EFI Boot Power Configuration Watch Dog Function If enabled the Watch Dog Timer wi...

Страница 56: ...cessor Cores Hyper Threading Technology Intel VT x Technology Intel SMX Technology 64 bit EIST Technology CPU C3 State CPU C6 State CPU C7 State L1 Data Cache L1 Code Cache L2 Cache L3 Cache L4 Cache...

Страница 57: ...main memory to the L2 cache to improve CPU performance The options are Disabled and Enabled Adjacent Cache Line Prefetch Available when supported by the CPU The CPU prefetches the cache line for 64 by...

Страница 58: ...e Ratio Limit Override This increases multiplies 1 clock speed in the CPU core in relation to the bus speed when one CPU core is active Press or on your keyboard to change the value Enter 0 to use the...

Страница 59: ...e C State Un Demotion Use this feature to enable or disable the Package C State un demotion The options are Disabled and Enabled C State Pre Wake This feature allows the user to enable or disable the...

Страница 60: ...and availability in networking and data sharing The options are Enabled and Disabled Gaussian Mixture Model This feature is to enable or disable the System Agent Gaussian Mixture Model device The opi...

Страница 61: ...ocated Dynamic Video Memory Technology DVMT allows dynamic allocation of system memory to be used for video devices to ensure best use of available system memory based on the DVMT 5 0 platform The opt...

Страница 62: ...ble or disable the DMI extended synchronization The options are Enabled and Disabled DMI De Emphasis Control Use this feature to configure the De emphasis control on DMI The options are 6dB and 3 5dB...

Страница 63: ...ance The options are Auto 128 TLP and 256 TLP SLOT4 Slot Power Limit Value Use this feature to set the upper limit on the power supplied by the PCIE slot Press or on your keyboard to change this value...

Страница 64: ...ions are Disabled and Enabled Memory Scrambler Select Enabled to enable memory scrambler support The options are Disabled and Enabled Fast Boot Use this feature to enable or disable fast path through...

Страница 65: ...wer Management ASPM level for a PCI E device Select Auto for the system BIOS to automatically set the ASPM level based on the system configuration Select Disabled to disable ASPM support The options a...

Страница 66: ...vice that is not compliant with the PCI E standards The options are Disabled and Enabled Port 61h bit 4 Emulation Select Enabled to enable the emulation of Port 61h bit 4 toggling in SMM System Manage...

Страница 67: ...ort Model number of drive and capacity Software Preserve Support Information Port 0 Port 7 Spin Up Device On an edge detect from 0 to 1 set this item to allow the PCH to initialize the device The opti...

Страница 68: ...t The options are Disabled Legacy and EFI CPU SLOT4 PCI E 3 0 X8 IN X16 OPROM Use this feature to select which firmware type to be loaded for the add on card in this slot The options are Disabled Lega...

Страница 69: ...tion to specify the wait time to press the ESC key to abort the PXE boot Press or on your keyboard to change the value The default setting is 0 Media detect count Use this option to specify the number...

Страница 70: ...ons are Enabled and Disabled Logical Device Settings This item displays the status of a serial part specified by the user Serial Port 2 Change Settings This feature specifies the base I O port address...

Страница 71: ...rmware Type Information ME FW SKU Information ME FW Image Re Flash Use this feature to enable or disable the ME Firmware image re flash capability The options are Disabled and Enabled AMT Configuratio...

Страница 72: ...e transmission speed for a serial port used in Console Redirection Make sure that the same speed is used in the host computer and the client computer A lower transmission speed may be required for lon...

Страница 73: ...and Enabled COM1 Legacy OS Redirection Resolution Use this feature to select the number of rows and columns used in Console Redirection for legacy OS support The options are 80x24 and 80x25 COM1 Putt...

Страница 74: ...its and 8 Bits COM2 Parity A parity bit can be sent along with regular data bits to detect data transmission errors Select Even if the parity bit is set to 0 and the number of 1 s in data bits is even...

Страница 75: ...to Bootloader legacy Console Redirection is disabled before booting the OS When set to Always Enable legacy Console Redirection remains enabled when booting the OS The options are Always Enable and Bo...

Страница 76: ...ith your data bits The options are None Even Odd Mark and Space COM3 Stop Bits A stop bit indicates the end of a serial data packet Select 1 Stop Bit for standard serial data communication Select 2 St...

Страница 77: ...his feature allows the user to specify how the host computer will exchange data with the client computer which is the remote computer used by the user Out of Band Management Port The feature selects a...

Страница 78: ...synchronizing multimedia streams providing smooth playback and reducing the dependency on other timestamp calculation devices such as an x86 RDTSC Instruction embedded in the CPU The High Performance...

Страница 79: ...Support Intel TXT Trusted Execution Technology helps protect against software based attacks and ensures protection confidentiality and integrity of data stored or created on the system Use this featur...

Страница 80: ...number The PBA number is a nine digit number i e 010B00 000 located near the serial number Device Name This item displays the adapter device name Chip Type This item displays the network adapter chips...

Страница 81: ...aord to select a value UEFI Driver This item displays the UEFI driver version Adapter PBA This item displays the Processor Bus Adapter PBA model number The PBA number is a nine digit number i e 010B00...

Страница 82: ...bled Erasing Settings Erase Event Log If No is selected data stored in the event log will not be erased Select Yes Next Reset data in the event log will be erased upon next system reboot Select Yes Ev...

Страница 83: ...plicate event must happen before the MECI counter is incremented This is a numeric value The default value is 1 METW The Multiple Event Time Window METW defines number of minutes must pass between dup...

Страница 84: ...s for the system to check for a password at bootup or upon entering the BIOS Setup utility The options are Setup and Always Administrator Password Press Enter to create a new or change an existing Adm...

Страница 85: ...ns are Yes and No Save All Secure Boot Variables This feature allows the user to decide if all secure boot variables should be saved Platform Key PK This feature allows the user to configure the setti...

Страница 86: ...option prioritizes the order of bootable devices that the system to boot from Press Enter on each entry from top to bottom to select devices If the item above set to Legacy UEFI Dual the following it...

Страница 87: ...I devices are boot devices UEFI Boot Order 1 6 7 Save Exit Select the Exit tab from the BIOS setup utility screen to enter the Exit BIOS Setup screen Discard Changes and Exit Select this option to qui...

Страница 88: ...t for maximum performance Save As User Defaults To set this feature select Save as User Defaults from the Exit menu and press Enter This enables the user to save any changes to the BIOS setup for futu...

Страница 89: ...continue the boot up procedure If a fatal error occurs you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible be...

Страница 90: ...support manuals AMI BIOS POST Codes User s Guide When BIOS performs the Power On Self Test it writes checkpoint codes to I O port 0080h If the computer cannot complete the boot process a diagnostic c...

Страница 91: ...or assistance Only certified technicians should attempt to install or configure components Read this appendix in its entirety before installing or configuring components in the Supermicro chassis Thes...

Страница 92: ...o considere los riesgos de la corriente el ctrica y familiar cese con los procedimientos est ndar de prevenci n de accidentes Al final de cada advertencia encontrar el n mero que le ayudar a encontrar...

Страница 93: ...n dient u zich bewust te zijn van de bij een elektrische installatie betrokken risico s en dient u op de hoogte te zijn van de standaard procedures om ongelukken te voorkomen Gebruik de nummers aan he...

Страница 94: ...mentaci n Attention Avant de brancher le syst me sur la source d alimentation consulter les directives d installation Circuit Breaker Waarschuwing Raadpleeg de installatie instructies voordat u het sy...

Страница 95: ...del edificio Aseg rese de que el dispositivo de protecci n no sea superior a 250 V 20 A Attention Pour ce qui est de la protection contre les courts circuits surtension ce produit d pend de l install...

Страница 96: ...e energ a y del cable el ctrico quitado de los m dulos de fuente de alimentaci n antes de tener acceso el interior del chasis para instalar o para quitar componentes de sistema Attention Le syst me do...

Страница 97: ...els aangesloten op de voeding en van de behuizing te verwijderen Equipment Installation Warning Only trained and qualified personnel should be allowed to install replace or service this equipment Warn...

Страница 98: ...tention Il est vivement recommand de confier l installation le remplacement et la maintenance de ces quipements des personnels qualifi s et exp riment s Warning This unit is intended for installation...

Страница 99: ...una de estas reas mediante la utilizaci n de una herramienta especial cerradura con llave u otro medio de seguridad Attention Cet appareil doit tre install e dans des zones d acc s r serv s L acc s u...

Страница 100: ...emblable ou quivalent recommand e par le fabricant Jeter les piles usag es conform ment aux instructions du fabricant Advertencia Existe peligro de explosi n si la bater a se reemplaza de manera incor...

Страница 101: ...anbevolen wordt Gebruikte batterijen dienen overeenkomstig fabrieksvoorschriften afgevoerd te worden Redundant Power Supplies Warning This unit might have more than one power supply connection All con...

Страница 102: ...omloos te maken Advertencia Puede que esta unidad tenga m s de una conexi n para fuentes de alimentaci n Para cortar por completo el suministro de energ a deben desconectarse todas las conexiones Atte...

Страница 103: ...ertencia Cuando el sistema est en funcionamiento el voltaje del plano trasero es peligroso Tenga cuidado cuando lo revise Attention Lorsque le syst me est en fonctionnement des tensions lectriques cir...

Страница 104: ...cumplir con las normas de electricidad locales y nacionales Backplane Waarschuwing Een gevaarlijke spanning of energie is aanwezig op de backplane wanneer het systeem in gebruik is Voorzichtigheid is...

Страница 105: ...e elektriciteitsvoorschriften Warnung Die Entsorgung dieses Produkts sollte gem allen Bestimmungen und Gesetzen des Landes erfolgen Warning Ultimate disposal of this product should be handled accordin...

Страница 106: ...recyclage de ce produit sont g n ralement soumis des lois et ou directives de respect de l environnement Renseignez vous aupr s de l organisme comp tent Hot Swap Fan Warning Warning Hazardous moving...

Страница 107: ...tornilladores y todos los objetos lejos de las aberturas del ventilador Attention Pieces mobiles dangereuses Se tenir a l ecart des lames du ventilateur Il est possible que les ventilateurs soient tou...

Страница 108: ...nnzeichnet an Ger ten oder Produkten die nicht mit Supermicro gekennzeichnet sind AC AC UL CSA UL CSE Supermicro Supermicro UL CSA UL CSA Supermicro UL CSA UL CSA Warning When installing the product u...

Страница 109: ...le code pour tous les autres appareils lectriques sauf les produits d sign s par Supermicro seulement AC AC UL CSA UL CSA Supermicro UL CSA UL CSA Supermicro Advertencia Cuando instale el producto uti...

Страница 110: ...Aansluitmethode deze moet altijd voldoen aan de lokale voorschriften en veiligheidsnormen inclusief de juiste kabeldikte en stekker Het gebruik van niet geschikte Kabels en of Adapters kan een storin...

Страница 111: ...s for 3 5 SATA drives PCI Expansion Slots One PCI Express 3 0 x16 slot may support two PCI E 3 0 x8 cards Three PCI Express 3 0 x1 slots Two PCI 33MHz slots One M 2 slot 32Mb s Motherboard X11SAE ATX...

Страница 112: ...N 61000 4 5 EN 61000 4 6 EN 61000 4 8 EN 61000 4 11 Safety CSA EN IEC UL 60950 1 Compliant UL or CSA Listed USA and Canada CE Marking Europe Perchlorate Warning California Best Management Practices Re...

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