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Chapter 6: Advanced Chassis Setup

6-3

6-3 Installing the Baseboard into the Chassis

Refer to Chapter 5 for instructions on installing components such as CPUs and
memory. Follow the instructions below to install the baseboard into the chassis.

Tools Needed

Phillips Screwdriver

•

Pan head #6 screws (23 pieces)

•

Standoffs (20 pieces, if needed)

•

First install the IO shield in the chassis.

1.

Locate the mounting holes on the baseboard and the matching mounting

2.

holes on the chassis.

CPU Board Slot 4

Rev. 1.01

X8OBN-F Baseboard

KB/Mouse

IPMI LAN

USB 0/1

LED6

JPT1

JPL1

J25
J32

Fan12

Fan 11

LAN2

LAN1

UID

COM1

VGA

LAN CTRL

J29

J30

JUID_OW1

Fan 10
Fan 9

LED4

JPG1

BMC CTRL

JPB1

JPRST1

Slot1 PCI-E 2.0 x8 in x16

Slot2 PCI-E 2.0 x8 in x16

Slot3 PCI-E 2.0 x8

Slot4 PCI-E 2.0 x16

Slot5 PCI-E 2.0 x8

Slot6 PCI-E 2.0 x16

Slot7 PCI-E 2.0 x8

Slot8 PCI-E 2.0 x16

Slot9 PCI-E 2.0 x8

Slot10 PCI-E 2.0 x16

LED12

LED13 LED14 LED15 LED16 LED17 LED18 LED19

JTPM1

JBT1

JPME1

Fan1

JL1

I-SATA4

I-SATA3

I-SATA2 I-SATA0

USB4/5

USB2/3

USB10 USB8

JIPMB1

COM2

JWF1

JP3

JPWR3

BT1

J26

JD1

T-SGPIO2

T-SGPIO1

I-SATA5

Buzzer

JPWR4

JPWR1

JPWR2

PLX
PCI Bridge

I/O Hub 2

I/O Hub 1

ICH10R

Battery

PWR 1

PWR 2

Fan2

Fan7

Fan3

Fan4

Fan5

Fan6

JF1

FP CRTL

Fan8

CPU Board Slot 1

CPU Board Slot 2

JOH1

JWD1

JPME2

CPU Board Slot 3

JP16

JP17

JP19

JP18

I-SATA1

JP22

JP21

Install standoffs in the chassis as needed.

3.

Place the baseboard in the chassis, making sure that the mounting holes on

4.

the baseboard match the corresponding mounting holes on the chassis. Also
make sure the IO ports are positioned toward the rear of the chassis.

Using the Phillips screwdriver, insert a pan head #6 screw into mounting hole

5.

on the baseboard and its matching standoff on the chassis. Repeat this step
to secure the baseboard to the chassis. It is best to tighten all screws only
after they have all been installed.

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Summary of Contents for Supero SUPERSERVER 5086B-TRF

Page 1: ...SUPERSERVER 5086B TRF SUPER USER S MANUAL 1 0...

Page 2: ...any such disputes Super Micro s total liability for all claims will not exceed the price paid for the hardware product FCC Statement This equipment has been tested and found to comply with the limits...

Page 3: ...stem and describes the main features of the X8OBN F and the SC758 chassis Chapter 2 Server Installation This chapter describes the steps necessary to install the SuperServer 5086B TRF into a rack and...

Page 4: ...processors or main memory Chapter 6 Advanced Chassis Setup Refer to Chapter 6 for detailed information on the SC758 server chassis You should follow the procedures given in this chapter when installin...

Page 5: ...Notes Preface v...

Page 6: ...2 1 2 2 Unpacking the System 2 1 2 3 Preparing for Setup 2 1 Choosing a Setup Location 2 2 Rack Precautions 2 2 Server Precautions 2 2 Rack Mounting Considerations 2 3 Ambient Operating Temperature 2...

Page 7: ...ing Precautions 4 4 Chapter 5 Advanced Setup 5 1 Handling the Baseboard 5 1 Precautions 5 1 5 2 Component Installation 5 2 Removing a Bridge Module from the Chassis 5 2 Removing a CPU Module from the...

Page 8: ...oval 6 6 Accessing the Drive Bays 6 6 Hard Drive Midplane 6 6 SATA Drive Installation 6 6 6 6 Power Supply 6 9 Power Supply Failure 6 9 Replacing the Power Supply 6 9 Chapter 7 BIOS 7 1 Introduction 7...

Page 9: ...een certified for use with the system www supermicro com Below is a list of the main hardware components included with the 5086B TRF Eight passive CPU heatsinks SNK P0044P Four air shrouds MCP 310 758...

Page 10: ...e system have a total of 64 DIMM slots that can support up to 2 TB of ECC registered DDR3 1333 1066 978 800 SDRAM See Chapter 5 for details SATA The ICH10R portion of the chipset provides 3 Gbps SATA...

Page 11: ...66 1 QPI 6 4GT s DDR3 800 1066 1 DDR3 800 1066 1 SMI 6 4GT s SMI 6 4GT s SMI 6 4GT s SMI 6 4GT s MB2 MB3 MB0 MB1 DDR3 Ch B DDR3 Ch D DDR3 Ch C DDR3 Ch F DDR3 Ch E DDR3 Ch H DDR3 Ch G DDR3 Ch A DDR3 80...

Page 12: ...hot swappable units and are connected to a midplane that provides power and control Note The operating system you use must have RAID support to enable the hotswap capabil ity of the SATA drives Front...

Page 13: ...dress Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl T...

Page 14: ...1 6 SUPERSERVER 5086B TRF User s Manual Notes...

Page 15: ...Section 2 5 2 2 Unpacking the System You should inspect the box the system was shipped in and note if it was damaged in any way If the server itself shows damage you should file a damage claim with t...

Page 16: ...f the rack are fully extended to the floor with the full weight of the rack resting on them In single rack installation stabilizers should be attached to the rack In multiple rack installations the ra...

Page 17: ...quipment should be mounted into a rack so that the amount of airflow required for safe operation is not compromised Mechanical Loading Equipment should be mounted into a rack so that a hazardous condi...

Page 18: ...ck between 26 5 and 36 4 deep Identifying the Sections of the Rack Rails The optional rackmount kit includes two rack rail assemblies Each of these as semblies consist of three sections an inner fixed...

Page 19: ...the rack This prevents the server from coming completely out of the rack when when the chassis is pulled out for servicing Releasing the Inner Rail Releasing Inner Rail from the Outer Rails Identify...

Page 20: ...inner rail firmly against the side of the chassis aligning the hooks 2 on the side of the chassis with the holes in the inner rail Slide the inner rail forward toward the front of the chassis until th...

Page 21: ...ont of the outer rail onto the slots on the front of 3 the rack If necessary use screws to secure the outer rails to the rack as illustrated above Pull out the rear of the outer rail adjusting the len...

Page 22: ...the chassis inner rails with the front of the middle rails 4 Slide the inner rails on the chassis into the middle rails keeping the pressure 5 even on both sides until the locking tab of the inner ra...

Page 23: ...install the chassis into a rack Install the whole rail assembly onto the rack as described on page X 7 1 Release the inner rail without retracting the middle rail 2 Install the inner rails on the cha...

Page 24: ...depress where it 4 says push then lift the latch to release the cover Lift the cover from the chassis to gain full access to the inside of the server 5 Checking the Components and Setup You may have...

Page 25: ...more drives already installed If you need to install SATA drives please refer to Chapter 6 Checking the Airflow Airflow is provided by four hot swap 9 cm chassis fans working in conjunction 1 with fou...

Page 26: ...2 12 SUPERSERVER 5086B TRF User s Manual Notes...

Page 27: ...easy front side access 3 2 Control Panel Buttons Power This is the main power button which is used to apply or turn off the main system power Turning off system power with this button removes the main...

Page 28: ...t the heatsinks are installed properly see Chapter 5 This LED will remain flashing or on as long as the indicated condition exists NIC1 Indicates network activity on the LAN1 port when flashing NIC2 I...

Page 29: ...ach drive carrier has two LEDs Green This LED will blink on and off to indicate read write activity to the hard drive Red A steady red LED indicates a drive failure If one of the drives fails you shou...

Page 30: ...SUPERSERVER 5086B TRF User s Manual 3 4 Notes...

Page 31: ...ower down the sys tem with the operating system The unit has more than one power supply cord Disconnect both power supply cords before servicing to avoid electrical shock When working around exposed e...

Page 32: ...roduct may be connected to an IT power system In all cases make sure that the unit is also reliably connected to Earth ground Baseboard Battery CAUTION There is a danger of explosion if the onboard ba...

Page 33: ...PCBs come into contact with your clothing which may retain a charge even if you are wearing a wrist strap Handle a board by its edges only do not touch its components peripheral chips memory modules...

Page 34: ...tice is not strictly followed Figure 4 1 Installing the Onboard Battery LITHIUM BATTERY BATTERY HOLDER Please handle used batteries carefully Do not damage the battery in any way a damaged battery may...

Page 35: ...chapter To prevent the baseboard from bending keep one hand under the center of the board to support it when handling The following measures are generally sufficient to protect your equipment from ele...

Page 36: ...the chassis top cover which is secured to the chassis with a single screw at the rear Removing a Bridge Module from the Chassis Loosen the screws on the bridge board bracket 1 Use even pressure to pul...

Page 37: ...y and re attached before the CPU board is installed back into the baseboard Each air shroud has four hooks at the corners that secure it to the CPU 1 board Locate and release the hooks from either edg...

Page 38: ...CPUs and memory For this reason you should lay the board either on a smaller support surface or on the edge of the table so that the board bracket handles do not touch the surface the board bracket i...

Page 39: ...rd The CPU board bracket that the CPU board is attached to does not present a flat surface for installing CPUs and memory For this reason you should lay the board either on a smaller support surface o...

Page 40: ...Population on each CPU board Number of CPUs DIMMs CPU and Memory Population Configuration Table For memory to work properly please install DIMMs in pairs 2 CPUs 8 DIMMs CPU1 CPU2 P1 1A P1 3A P1 5A P1...

Page 41: ...rt the CPU module into the guide rails until the bottom of the CPU board 4 contacts the top of the CPU board slot The gold fingers at the bottom of the board should contact the slots at the same time...

Page 42: ...n the bridge board aligns with the gold fingers of the CPU boards The bridge board bracket is marked Front to indicate the correct orientation Press evenly on all sides of the module to fully seat the...

Page 43: ...Loosen the thumbscrew on the side of the AC socket cage and the screw on 2 the top if applicable Push the cage outwards from the chassis until there is enough room to install 3 add on cards Install t...

Page 44: ...6 Slot 2 PCI E 2 0 x8 in x16 Slot 3 PCI E 2 0 x8 Slot 4 PCI E 2 0 x16 Slot 5 PCI E 2 0 x8 Slot 6 PCI E 2 0 x16 Slot 7 PCI E 2 0 x8 Slot 8 PCI E 2 0 x16 Slot 9 PCI E 2 0 x8 Slot 10 PCI E 2 0 x16 LED12...

Page 45: ...Speaker CPU Board Slots 1 4 CPU Board Slots 1 4 for CPU boards COM1 COM2 Serial Port Header I SATA 0 5 SATA Ports JD1 Speaker Power LED Indicator JF1 Control Panel Header JIPMB1 External BMC I2 C Hea...

Page 46: ...n pins 19 and 20 of JF1 Refer to the table on the right for pin definitions NMI Button Pin Definitions JF1 Pin Definition 19 Control 20 Ground Power LED Pin Definitions JF1 Pin Definition 15 3 3V 16 P...

Page 47: ...lue LED Cathode 8 Blue OH Fan Fail PWR Fail UID LED OH Fan Fail Indicator Status State Definition Off Normal On Overheat Flash ing Fan Fail Power Button The Power Button connection is locat ed on pins...

Page 48: ...nnect the appropriate cable here to provide power support for a DOM device DOM PWR Pin Definitions Pin Definition 1 5V 2 Ground 3 Ground HDD Power Connector Pin Definitions Pins Definition 1 4 GND 5 6...

Page 49: ...ible indica tions for various beep codes See the table on the right for pin definitions Onboard Speaker Pin Definition Pin Definitions Pin 1 Pos Beep In Pin 2 Neg Alarm Speaker PWR LED Connector Pin D...

Page 50: ...on header is located at JL1 on the baseboard Attach an appropriate cable from the chassis to inform you of a chassis intrusion condi tion when the chassis is opened Chassis Intrusion Pin Definitions P...

Page 51: ...S Clear JBT1 is used to clear CMOS which will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally clearing the contents of CMOS To clear CMOS First po...

Page 52: ...2 Reset Pins 2 3 NMI Open Disabled LAN1 2 Enable Disable Change the setting of jumper JPL1 to enable or disable the LAN1 and LAN2 Ethernets ports See the table on the right for jumper settings The def...

Page 53: ...JUID_OW1 UID_Overwriting When the jumper JUID_OW1 is set to Off default the red LED Overheat Fan Fail PWR Fail UID LED located on pin 8 of JF1 will take precedence over the blue UID_LED located on pin...

Page 54: ...the table at right for more information IPMI LAN Link LED Left Activity LED Right Color State Definition Link Left Green Solid 100 Mbps Activity Right Amber Blinking Active Rear UID LED The rear UID L...

Page 55: ...ion 1 Ground 2 TX_P 3 TX_N 4 Ground 5 RX_N 6 RX_P 7 Ground Serial ATA Ports There are six Serial ATA Ports I SATA0 I SATA5 located on the X8OBN F These ports supported by the Intel ICH10R South Bridge...

Page 56: ...d with your serverboard Driver Tool Installation Display Screen Note Click the icons showing a hand writing on paper to view the readme files for each item Click the computer icons to the right of the...

Page 57: ...tem information such as CPU temperature system voltages and fan status See the Figure below for a display of the SuperoDoctor III interface Note The default User Name and Password for SuperDoctor III...

Page 58: ...wnloaded from our Web Site at ftp ftp supermicro com utility Supero_Doctor_III You can also download the SDIII User s Guide at http www supermicro com PRODUCT Manuals SDIII UserGuide pdf For Linux we...

Page 59: ...y carefully The following measures are generally sufficient to protect your equipment from ESD damage Precautions Use a grounded wrist strap designed to prevent static discharge Touch a grounded metal...

Page 60: ...The control panel LEDs inform you of system status See Chapter 3 System Interface for details on the LEDs and the control panel buttons 2 Front Chassis Features 1 Hot swap Drive Bays 3 Power Supply Mo...

Page 61: ...t8 PCI E 2 0 x16 Slot9 PCI E 2 0 x8 Slot10 PCI E 2 0 x16 LED12 LED13 LED14 LED15 LED16 LED17 LED18 LED19 JTPM1 JBT1 JPME1 Fan1 JL1 I SATA4 I SATA3 I SATA2 I SATA0 USB4 5 USB2 3 USB10 USB8 JIPMB1 COM2...

Page 62: ...the same type and model the system can continue to run with a failed fan Re move the top chassis cover while the system is still running to determine which of the four fans has failed Replacing Fans T...

Page 63: ...Chapter 6 Advanced Chassis Setup 6 5 Figure 6 2 Replacing a Rear Exhaust Fan Figure 6 3 Replacing a System Fan...

Page 64: ...riers to simplify their installation and removal from the chassis The carriers also help promote proper airflow for the drives For this reason even empty carriers without hard drives installed must re...

Page 65: ...ot touch the midplane with any metal objects and make sure no cables touch the midplane or obstruct the holes which aid in proper airflow Figure 6 4 Removing an HDD Carrier from the Chassis Enterprise...

Page 66: ...6 8 SUPERSERVER 5086B TRF User s Manual Figure 6 5 Removing the Dummy Drive from the Carrier Drive Carrier Dummy Drive 1 1 1 1 1 2 Figure 6 6 Installing a Drive to a Carrier 1 4 1 4 1 3...

Page 67: ...ly units have a hot swap capability meaning you can replace the failed unit without powering down the system Replacing the Power Supply You do not need to shut down the system to replace a power suppl...

Page 68: ...6 10 SUPERSERVER 5086B TRF User s Manual Figure 6 7 Installing a Power Supply Module...

Page 69: ...t frame displays the key legend Above the key legend is an area reserved for a text message When an option is selected in the left frame it is highlighted in white Often a text message will accompany...

Page 70: ...icro be liable for direct indirect special incidental or consequential damages arising from a BIOS update If you have to update the BIOS do not shut down or reset the system while the BIOS is updating...

Page 71: ...English System Time System Date These features allow the user to change the system time and date Highlight System Time or System Date using the arrow keys Enter new values through the keyboard and pr...

Page 72: ...network device The options are Enabled and Disabled Launch Storage OpROM Select Enabled to boot up the system via a legacy mass storage device that has the Option ROM capability built in The options...

Page 73: ...upport The options are Enabled and Disabled PERR Generation Select Enabled to allow a PCI device to generate a PERR number for a PCI Bus Signal Error Event The options are Enabled and Disabled SERR Ge...

Page 74: ...Select Disabled to disable ASPM support The options are Disabled Force L0 and Auto Warning Enabling ASPM support may cause some PCI E devices to fail Extended Synch Select Enabled to generate extende...

Page 75: ...d and executed immediately If the option Disable Take Ownership is selected the pending TPM operation will not take precedence over other operations and will be processed based on the order that are p...

Page 76: ...lays the CPU type for the mainboard Physical Processors This item displays the number of physical processors used in this system Logical Processors This item displays the number of logical processors...

Page 77: ...code can execute and where it cannot thus preventing a worm or a virus from flooding illegal codes to overwhelm the processor or damage the system during an attack The default is Enabled Refer to Inte...

Page 78: ...erforming meaningful and useful tasks The options are HW_All All Hardware related events SW_All All Software related events and SW_Any Any Software related events CPU C3 Report Available when the C St...

Page 79: ...Available when RAID or AHCI is selected Select BIOS Native Module to use the BIOS Native Mode for the AHCI Interface Select Intel AHCI ROM to use the Intel AHCI ROM for the AHCI Interface Take cautio...

Page 80: ...presence of a USB Mass Storage Device before it proceeds with the next operation during POST The options are 10 Seconds 20 Seconds 30 Seconds and 40 Seconds Controller Timeout This setting allows you...

Page 81: ...ded for high power consuming and high density systems Select Balanced BL for the onboard fans to run at a speed that will balance the needs between system cooling and power saving The BL setting is re...

Page 82: ...re Tolerance has been reached or exceeded The overheat alarm may be triggered The system may shut down if it continues for a long period to prevent damage to the CPU CPU Vcore CPU Vcache CPU Millbrook...

Page 83: ...to specify how the host computer will exchange data with the client computer which is the remote computer used by the user Terminal Type This feature allows the user to select the target terminal emu...

Page 84: ...revent data loss caused by buffer overflow Send a Stop signal to stop send ing data when the receiving buffer is full Send a Start signal to start sending data when the receiving buffer is empty The o...

Page 85: ...with your data bits The options are None Even Odd Mark and Space Stop Bits A stop bit indicates the end of a serial data packet Select 1 Stop Bit for standard serial data communication Select 2 Stop...

Page 86: ...ion This feature allows the user to configure Intel Virtualization Technology for Directed I O settings Intel VT d Select Enabled to enable Intel Virtualization Technology support for Direct I O VT d...

Page 87: ...tural improvements freeing resources for more other tasks The options are Disabled and Enabled DCA Support Available when Intel I OAT is enabled Select Enabled to use Intel s DCA Direct Cache Access T...

Page 88: ...he following QPI settings Current QPI Link Speed This item displays the current QPI Link speed Current QPI Link Frequency This item displays the current QPI Link fre quency CSI Common System Interface...

Page 89: ...sor systems The options are Enabled and Disabled MMIOH Size per IOH Use this feature to select the MMIOH Size to be allocated to every IOH in the system The options are 2G 4G 6G and 8G Intel reference...

Page 90: ...e used by the virtual memory system of the OS to access the data in the file system directly instead of accessing the contents stored in a file one piece at a time to improve I O performance The optio...

Page 91: ...are Copy cycle to complete the task Select 5 hours for the AMI BIOS to automatically set the time needed for spare copy to complete the task The default setting is 5 hours Mirroring Migration Select E...

Page 92: ...o configure the following South Bridge parameters High Precision Event Timer Select Enabled to activate the High Precision Event Timer HPET that produces periodic interrupts at a much higher frequency...

Page 93: ...the user to enhance USB1 0 communication The options are Enabled and Disabled USB Port0 USB Port11 Select Enabled to enable the USB port specified by the user for USB communica tion The options are E...

Page 94: ...System Event Logging SEL during bootup The options are Enabled and Disabled Erasing Settings This feature allows the user to decide when to erase a System Event Log Erase SEL Select Yes to erase all...

Page 95: ...annel specified If DHCP is selected BIOS will search for a DHCP Dynamic Host Configuration Protocol server in the network it is attached to and request the next available IP address If Do Nothing is s...

Page 96: ...d to skip certain tests during POST to reduce the time needed for system boot This feature has no effect on BBS BIOS Boot Specification boot options The options are Enabled and Disabled Setup Prompt T...

Page 97: ...ture Interrupt 19 at bootup and allow the drives that are attached to these host adaptors to function as bootable disks If this item is set to Disabled the ROM BIOS of the host adap tors will not capt...

Page 98: ...s and is allowed to change configuration settings in the Setup Utility 7 9 Save Exit Use this section to configure Save Exit settings Save Changes and Exit When you have completed the system configura...

Page 99: ...I BIOS to automati cally load Optimal Defaults to the BIOS Settings The Optimal settings are designed for maximum system performance but they may not work best for some computer applications Save as U...

Page 100: ...7 32 SUPERSERVER 5086B TRF User s Manual Notes...

Page 101: ...p If a fatal error oc curs you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible beeps The numbers on the fatal...

Page 102: ...A 2 SUPERSERVER 5086B TRF User s Manual Notes...

Page 103: ...TB of ECC registered DDR3 1066 800 SDRAM Note see Section 5 2 for details SATA Controller ICH10R on chip SATA controller for 6 port 3 Gbps SATA 2 0 RAID 0 1 5 and 10 modes supported RAID 5 supported i...

Page 104: ...ensing Non operating Relative Humidity 5 to 95 non condensing Regulatory Compliance Electromagnetic Emissions FCC Class A EN 55022 Class A EN 61000 3 2 3 3 CISPR 22 Class A Electromagnetic Immunity EN...

Page 105: ...B 3 Appendix C System Specifications Notes...

Page 106: ...rform be reasonably expected to result in significant injury or loss of life or catastrophic property damage Accordingly Supermicro dis claims any and all liability and should buyer use or sell such p...

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