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Olympus FV1200 User guide 

June 23, 2015 

G. Z-Series (xyz) Image Acquisition 

Use this mode to obtain optical section through the depth (z dimension) of your sample that can be used for 
3D visualization.  Before starting the following procedure, make adjustment for xy multicolor imaging 
condition as described above. 

1.

 

Click 

 button to scan.   

2.

 

Use the arrowheads 

 

buttons or the 

focus knob

 

on the 

remote controller

 to focus into different Z-axial planes (large 

arrowhead buttons shift a full step size and small ones a half 
step size that you define).   
 

3.

 

When you find an upper limit of your sample by moving the 
objective up, click 

Start Set

 

button.  Bring the objective down 

until you find lower limit and click 

End Set

 button.   

 

4.

 

Determine the 

Step Size

 

and the number of 

Slices

, which correlate with each other.  It is recommended to 

set the 

step size

 similar to the optical section thickness of the objective you are using, so that there is no 

gap between the optical sections upon projection into 3D.  The step size can be fixed by checking the box.   

5.

 

Click Stop

 button.  Adjust the Scan

 

Speed

 

if needed, click 

Depth

 

button (“

Z

” 

will be appear on the 

XY button

 to become 

XYZ

), and then click 

XYZ

 button. 

 

6.

 

When acquisition is done, 

Append 

Next/

SeriesDone

  button will appear over the 

Stop button.  If you need add additional sections, 
click 

Append Next

 button (enter the number of 

sections you want to add into the Append box

) or click 

SeriesDone

 to finish the 

acquisition.   
 

7.

 

Save the image.  

 

 

H. Time-Series (xyt) Image Acquisition 

Use this mode for imaging time-lapse of live specimens. Before 
starting time series imaging, make adjustment for xy imaging as usual.  

1.

 

Click Time button 

. It becomes 

XY_t

.   

2.

 

In the 

TimeScan

  option, enter the 

interval time

 (in second) 

between one acquisition start and the next acquisition start (for 
example; to set up a 1 min interval, type 60 and press Enter key. If 
you put 0 and enter (FreeRun), the interval will be the acquisition 
time that is required for each frame).  

Summary of Contents for FV1200 MPE

Page 1: ...supply by pushing the ON OFF button and releasing it The light should lights up in Blue 3 Turn on microscope controller and XY stage controller 4 Turn on the touch panel controller and touch Start Ope...

Page 2: ...power supplies a Multi Ar laser Switch to ON and turn the Key to ON b MCPSU 405 440 473 559 635nm Switch ON c LD559 laser Switch on and WAIT UNTIL THE TEMPERATURE LIGHT STOPS BLINKING and THEN turn th...

Page 3: ...to 1x With zoomed view you can select the scanning area by moving the blue lined box around Laser power control Checking the box will activate the laser The power can be adjusted by pointing the mouse...

Page 4: ...e sample at 2us pixel because of its fast display refreshing rate this will be good for focusing and searching for ROIs without bleaching your sample Focus x4 will be faster but the display quality ma...

Page 5: ...jective completely away from the sample and press again to bring the objective to the original position Fluorescent image observation 1 Select an objective lens using the touch panel controller TPC 2...

Page 6: ...u selected If the Selected dyes upon opening the program are not ones that you want to use click the All Clear button first before selecting your dyes 2 Choose Image size default 512x512 from Size pan...

Page 7: ...ckground in blue e Click to stop the fast scanning and click to scan at the imaging speed and to check the image quality Adjust more if needed 7 Repeat the above procedure for 515 nm EYFP and for 635...

Page 8: ...one channel first and then scans the next channel If there is no bleed through between the emissions of some fluorophores you are using you can group them together to scan them simultaneously as a gro...

Page 9: ...f the objective you are using so that there is no gap between the optical sections upon projection into 3D The step size can be fixed by checking the box 5 Click Stop button Adjust the Scan Speed if n...

Page 10: ...icking My Image Folder button select Tools Option menu Click General tab and specify the path of your image folder with Browse button Upon creating a user account each user will have its own folder in...

Page 11: ...pe for export ROI Overlay section allows saving the file with ROI information Output Format RGB Color the red green and blue channel will be saved in color as individual tif files in a folder RGB Colo...

Page 12: ...hour or so leave the microscope system ON If not shut down the system as described below Shutting Off the system 1 Shut down the computer 2 Turn the mercury lamp off by pushing ON OFF button for two s...

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