MagListo 5M User Manual Download Page 25

 

 

22 

www.bioneer.com

 

BQ-042-101-05 

Revision : 2 (2016-07-04)

 

 

XIII.

 

Troubleshooting guide 

 

Comments and suggestions 

Low yield of DNA 

Buffers  or  other  reagents  may  have  been  exposed  to  external  changes  or 

conditions that reduce its effectiveness. Please make sure that reagents were 

stored  at  room  temperature  at  all  times  upon  arrival  and  all  reagent  bottles 

were  closed  tightly,  in  order  to  preserve  pH  and  stability,  and  to  avoid 

contamination. 

Please  check  and  add  ethanol  to  the  Buffer  ③  (1

st

  Washing)  and  ④  (2

nd

 

Washing). After adding ethanol, mix Washing Buffer well and always mark the 

Washing Buffer bottles. If not, Washing Buffer remain concentrated and may 

wash away the adsorbed DNA. 

The  lysis  may  have  been  incomplete  especially  in  case  of  tissue.  Please, 

ensure  that  the  sample  changes  clarity  from  turbid  to  clear,  indicating  that 

protein digestion has occurred. Extend the incubation time if unlysed tissue is 

still present. The amount of time for  complete lysis  varies  depending on the 

type of tissue or sample type used. If a gelatinous mass still remains after the 

overnight incubation, centrifuge the sample and take the supernatant only for 

extraction of DNA. A shaking water bath should be used for efficient lysis. 

There  is  too  much  starting  material  to  extract  DNA.  Appropriate  amount  of 

starting  material  (see  “product  specification”  in  page  4)  should  be  used  for 

efficient extraction of genomic DNA. 

Low A

260/280 

ratio

 

Beads  may  have  been  dried  insufficiently.  You  must  always  completely  dry 

beads  in  a  drying  step.  Remained  ethanol  can  decrease  the  purity  of  DNA. 

Take enough time to completely dry the beads. 

Incomplete  suspension  of  beads  during  the  washing  step  causes  salts  to 

remain in the purified DNA. Make the beads suspended thoroughly during the 

washing process. 

Summary of Contents for 5M

Page 1: ......

Page 2: ...Bioneer Corporation 8 11 Munpyeongseo ro Daedeok gu Daejeon 34302 Republic of Korea Tel 82 42 930 8777 Fax 82 42 930 8688 Email sales bioneer co kr www bioneer com...

Page 3: ...l Amount of Sample 4 X Principle 4 XI Materials and Equipment Needed But Not Provided 5 XII Protocols 6 Before You Begin 6 DNA Extraction from Whole Blood 6 DNA Extraction from Cultured Cell 10 DNA Ex...

Page 4: ...e rapid extraction No costly capital instrument to instruments except MagListoTM Magnetic Separation Rack Applications Gene Cloning PCR Real Time PCR Southern Blotting SNP genotyping II Kit Components...

Page 5: ...ly recombinant samples including tubes tips and materials should be processed and disposed of according to applicable and appropriate regulations of the municipality government in which this product i...

Page 6: ...o your needs If you have any questions or would like to find out more information about MagListo products please contact us We look forward to hearing from you Technical Support For all technical ques...

Page 7: ...mer such as poly dA poly dT or gDNA or RNA should be added to the starting material Ensure that the carrier DNA does not interfere with your downstream application Carrier RNA can be removed later by...

Page 8: ...aline PBS 6 Blow dryer or heat gun 7 MagListoTM Magnetic Separation Rack Magnetic Separation Rack Choice Tube MagListoTM Magnetic Separation Rack 1 ml tube with 8 cap strip MagListoTM 8Ch Magnetic Sep...

Page 9: ...di 200 l maxi of proteinase K see Before you begin to each specific tube format a Mini Add proteinase K to a 1 5 ml or 2 ml tube b Midi Add proteinase K to a 15 ml tube c Maxi Add proteinase K to a 50...

Page 10: ...htly bind to the magnet Attachment Combine the magnet plate to the stand 8 Without removing the tube from MagListoTM carefully pour the supernatant out and completely remove the remaining supernatant...

Page 11: ...tep 9 11 by adding 700 l mini 5 ml midi 10 ml maxi of Buffer 2 nd Washing for additional washing 14 3 rd washing Repeat the above step 9 11 by adding 700 l mini 5 ml midi 10 ml maxi of absolute ethano...

Page 12: ...etic nano beads Do not reuse the beads Summary of Reagents Volume in Each Step of DNA Extraction from Whole Blood Step Buffer Mini Midi Maxi Page Blood PBS 200 l 2 ml 4 ml P 6 Lysis Buffer Binding 200...

Page 13: ...ro 20 l mini 100 l midi 200 l maxi of proteinase K see Before you begin to the tube 4 If RNA free genomic DNA is required add up to 2 l micro 10 l mini 75 l midi 150 l maxi of RNase A see Before you b...

Page 14: ...g a paper towel by blotting Discard solution Discard solution by inverting the MagListo rack The silicone immobilizer inside the stand holds the tubes from falling in an upside down position When disc...

Page 15: ...for 1 min micro mini 3 min midi 5 min maxi 3 cm away from the top of the tube Note Without using a heat gun or a blow dryer place the rack lying down in a dry oven at 60 for 10 min micro mini 20 min...

Page 16: ...10 7 P 10 Lysis Buffer Binding 100 l 200 l 1 ml 1 ml P 10 DNA Precipitation Absolute Ethanol 200 l 400 l 2 ml 2 ml P 10 Bead Binding Magnetic Nano Bead DNA 100 l 100 l 500 l 1 ml P 10 1 st Washing Bu...

Page 17: ...100 l midi 200 l maxi of proteinase K see Before you begin to the tube and mix thoroughly using a vortex mixer 4 If RNA free genomic DNA is required add up to 10 l mini 75 l midi 150 l maxi of RNase A...

Page 18: ...out and completely remove the remaining supernatant using a paper towel by blotting Discard solution Discard solution by inverting the MagListo rack The silicone immobilizer inside the stand holds th...

Page 19: ...e beads with the tube open and use a heat gun or a blow dryer for 1 min mini 3 min midi 5 min maxi 3 cm away from the top of the tube Note Without using a heat gun or a blow dryer place the rack lying...

Page 20: ...Lysis Buffer Lysis 180 l 1 8 ml 3 6 ml P 14 Buffer Binding 200 l 2 ml 4 ml P 14 DNA Precipitation Absolute Ethanol 400 l 4 ml 8 ml P 14 Bead Binding Magnetic Nano Bead DNA 100 l 500 l 1 ml P 14 1 st...

Page 21: ...a by pipetting 2 Resuspension of cell pellet 2 3 Add 180 l mini 1 8 ml midi 3 6 ml maxi of Buffer Lysis to the collected cell pellet and completely resuspend by vortex mixer or pipetting 3 Transfer th...

Page 22: ...3 Transfer the resuspended cell pellet to each specific tube format a Mini Transfer the resuspended pellet to a 1 5 ml or 2 ml tube b Midi Transfer the resuspended pellet to a 15 ml tube c Maxi Transf...

Page 23: ...thanol to the eluate and mix well by vortex mixer 5 DNA binding with Magnetic Nano Bead 5 7 Add 100 l mini 500 l midi 1 ml maxi of Magnetic Nano Bead solution to the tube and mix thoroughly using a vo...

Page 24: ...MagListo rack Add 700 l mini 5 ml midi 10 ml maxi of Buffer 2 nd Washing to the tube Close the cap and mix by vortex mixer until beads are fully resuspended Detachment Push up the magnet plate gently...

Page 25: ...rity from turbid to clear indicating that protein digestion has occurred Extend the incubation time if unlysed tissue is still present The amount of time for complete lysis varies depending on the typ...

Page 26: ...e eluate refer to DNA Clean Up protocol in page 20 for details Aggregation of Magnetic Nano Bead There is an excess amount of sample to extract DNA Appropriate amount of starting material see product...

Page 27: ...R Purification Kit 8 reactions mini 1 kit K 3609 MagListoTM 5M PCR Purification Kit 100 reactions mini 1 kit K 3610 MagListoTM 5M Cell Total RNA Extraction Kit 8 reactions mini 1 kit K 3611 MagListoTM...

Page 28: ...umber Contains sufficient for n tests USE BY Consult Instruction For Use Batch code Caution consult accompanying documents Temperature Limitation In Vitro Diagnostics Medical Device Manufacturer Cauti...

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