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CMI | SOP003_rev1.0 

 

8.9

 

Select the correct Video Viewer (objective) in the Video Control Window and calibrate (using 
‘Video Calibration’ button). The rotation should be within -1 and +1 degree. If not, rotate the 
camera in the binocular and redo the calibration.  Hint: center a piece of dirt or scratch in the 
video viewer window and try calibration again if having trouble getting the rotation below 1.   

8.10

 

Turn the roller (at the Raman coupler) to needed laser wavelength (with edge filter off) and 
switch on the shutter of the respective laser with minimum power. Adjust the laser power until 
the laser spot can be seen in the video image. Move the microscope in ‘z’ to focus the laser until 
the laser spot is sharp. 

8.11

 

Select ‘Probe position’ on the laser spot. 

8.12

 

Make sure the correct spectrometer is connected with the camera fibre and the right laser is 
selected using the ‘Configuration’ in the taskbar 

 

50 micron fibre : 633nm use  

 

100 micron fibre : 785nm use 

 

It is recommended to calibrate with silicon , if switching between wavelengths, but can be 

 

possible as a quick check just to swap in the fibre cables. 

Note: Take extreme care when 

 

handling the fibre cables as they can be damaged very easily. Ensure that the raised edge on 

 

the fibre end lines up with slot on the connector before tightening.  

8.13

 

Switch the coupler to laser wavelength with edge filter on. 

8.14

 

Pull out the knob to ‘Camera mode’ (the light propagates through the detection fibre now). 

8.15

 

Remove the beam splitter (set to either position 4) (not BF nor DIC or position 2 (extra DIC optics 
filters in that position). 

8.16

 

Start ‘Oscilloscope’, and adjust the power of the laser to get maximum intensity of the 1

st

 order 

Raman band of Silic

on at ≈520 rel.cm

-1

 

8.17

 

Adjust fine focus. 

8.18

 

Using the X and Y fibre knob (on top of the laser coupler), get the maximum intensity of the 
Raman band; then again adjust the Z focus with objective. 

8.19

 

Redo the above steps till maximum intensity is obtained. 

8.20

 

Record the spectrum for silicon , say 0.5 integration time , verify that the peak intensity is as 
expected and in the right place ie 520 rel wavenumbers.  

8.21

 

Close the laser shutter and stop the oscilloscope. Alignment of the microscope is now completed.  
 
 
 
 
 

Summary of Contents for SOP003

Page 1: ...hor Changes 1 0 12 5 14 P Owens Initial draft 1 Purpose 1 1 This document specifies the work instructions for the CMI Witec Confocal Raman microscope located in the ground floor Physiology lab Quadran...

Page 2: ...ation in a Laser safety course is strongly recommended for operating this system 3 2 Witec Alpha 500 manual hardcopy in the lab soft copy on the instrument PC and training notes 3 3 The CMI access pol...

Page 3: ...quire a Raman spectrum of most substances in seconds via Charge Coupled Device detectors CCDs that have a wide dynamic range for users to select the appropriate exposure time for their sample Dependin...

Page 4: ...with the system folders located on the shelf above the equipment 7 Start Up Procedure 7 1 Book equipment on CMI web booking system 7 2 Turn on lasers or individual laser if only one is to be used For...

Page 5: ...o be warmed up for at least 30 mins before acquisition while warming up alignment of the microscope can be done 7 7 Click on the Witec Project Control to start the raman software interface 633nm laser...

Page 6: ...tness to 100 in the software Illumination Make sure to see some intensity changes in the video image check it by opening and closing the aperture stop A at the microscope Typically keep this just slig...

Page 7: ...t directed to eyepiece camera Eyepiece camera Aperture stop Field stop Up down toggle between z control xy stage control X Y Stage controls Z Stage controls Z stage moves away from objective Z stage m...

Page 8: ...tching between wavelengths but can be possible as a quick check just to swap in the fibre cables Note Take extreme care when handling the fibre cables as they can be damaged very easily Ensure that th...

Page 9: ...or cells vibrational bands of C H stretching around 700 and 1000 wavenumbers can be used for mapping 9 4 After selecting the large area scan images with better contrast between cells and nanoparticles...

Page 10: ...should be 60 o C 11 Shut Down Procedure 11 1 You can save the experiment parameters for your own scanning recipe by clicking Save Project in File 11 2 Close the laser shutter switch off the laser powe...

Page 11: ...mple on the microscope Demonstrate finding the sample optimizing acquisition and taking spectra Demonstrate changing the fibre cable during the measurement session Demonstrate finishing and shutting d...

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