Zymo Research ZymoBIOMICS D4300 Скачать руководство пользователя страница 14

Page 13 

 
 

 
 

ZYMO RESEARCH CORP. 

Phone: (949) 679-1190  ▪  Toll Free: (888) 882-9682  ▪  Fax: (949) 266-9452  ▪  [email protected]  ▪  www.zymoresearch.com

 

 

Lysis Methods 
 

  When using a Disruptor Genie

â

, vortex adapter, vortex, or 

similar processing times will vary. Suggested beat beating time 
is anywhere from 5-20 minutes. Calibrate bead beating times 
to your particular device and application by testing several 
different time points before using precious samples. 
(Suggested times to test: 10, 20, and 30 minutes.)  See 
Appendix C for details. 

 

  When using high-speed bead bashing devices (e.g. Bertin 

Percellys, MP – FastPrep24) run max speed for 5 minutes to 
ensure unbiased lysis. 
 

 

Incomplete Debris Removal 

 

 

  For high density samples, ensure lysate is centrifuged properly 

to pellet insoluble debris following bead beating. Ensure that 
none of the debris is transferred to the 

Zymo-Spin™ III-F

 

Filter

 in the next step.

 

Low DNA Yield                                                
 
 

Input 

 

  If the lysate does not pass through the column or is extremely 

viscous, use less input material. Too much sample input can 
cause cellular debris to overload the column and insufficient 
flow 
 

  Consult the Sample Input Table on Page 4 for information on 

your particular input limit based on sample. 

 
 
 
 

 

 

   Binding Step 

 

  Ensure that the 

ZymoBIOMICS™ DNA Binding Buffer

 is 

completely mixed with lysate before loading onto the column. 
Improperly mixed samples can lead to poor DNA recovery.  

 

 

 

Elution Procedure

 

 

  Ensure the 

ZymoBIOMICS

 DNase/RNase Free Water

 

hydrates the matrix for at least 1 minute before centrifugation. 
 

  To increase yields, heat the 

ZymoBIOMICS

 DNase/RNase 

Free Water

 to 60ºC before use. Additionally, users can reload 

the eluate onto the column matrix, incubate at room 
temperature for 3 minutes, and centrifuge again to increase 
yield without further dilution.

 

 

Содержание ZymoBIOMICS D4300

Страница 1: ...tream application Certified Low Bioburden Boost your detection limit for low abundance microbes Simple Workflow Simply bead beat sample purify via spin column and filter to remove PCR inhibitors No pr...

Страница 2: ...beating device is recommended by using the ZymoBIOMICS Microbial Community Standard see Appendix C DNA Purity High quality inhibitor free DNA is eluted with ZymoBIOMICS DNase RNase Free Water and is s...

Страница 3: ...n downstream metagenomic analyses that is not reflective of actual abundance 2 See endospore lysis efficiency data in Appendix B 3 For more information on the ZymoBIOMICS Microbial Community Standard...

Страница 4: ...liably isolates DNA from even the toughest to lyse Gram positive organisms enabling unbiased analyses of microbial community compositions There is a significant increase in yield and Gram positive bac...

Страница 5: ...ICS DNA Binding Buffer to the filtrate in the Collection Tube from Step 4 Mix well Add 800 l of ZymoBIOMICS DNA Binding Buffer and 400 l of 95 ethanol to the filtrate in the Collection Tube from Step...

Страница 6: ...DNA5 6 12 Place a Zymo Spin III HRC Filter in a new Collection Tube and add 600 l ZymoBIOMICS HRC Prep Solution Centrifuge at 8 000 x g for 3 minutes 13 Transfer the eluted DNA Step 11 to a prepared Z...

Страница 7: ...e of a potentially biohazardous swab material Cat No R1106 R1107 Figure 4 A Nucleic acids in stool are effectively stabilized in DNA RNA Shield at room temperature Graph shows spike in DNA and RNA con...

Страница 8: ...MICS Lysis Tubes 0 1 0 5 mm and incubate for 30 minutes at 55 C 3 Continue to Step 2 page 4 and proceed with the protocol as written Plant Tissue Leaves and other plant material Plant tissues such as...

Страница 9: ...Tube 0 1 0 5 mm to be used in Step 2 below c Re suspend pellet in a buffer suitable for enzymatic treatment ex PBS or other isotonic solution 2 Transfer the digestion mixture to a ZR BashingBead Lysis...

Страница 10: ...isrupters FastPrep 24 or as long as 20 minutes when using lower speeds e g Disruptor Genie 3 Transfer the entire lysate to the ZR BashingBead Lysis Tube 0 1 0 5 mm proceed to Step 2 page 4 and continu...

Страница 11: ...ep 2 2 Centrifuge at 3 000 x g for 15 minutes 3 Without disturbing the pellet slowly decant or pipette out the supernatant leaving behind 100 400 l of pellet 4 Add ZymoBIOMICS Lysis Solution to a fina...

Страница 12: ...ty DNA Standard Cat No D6305 is a mixture of genomic DNA extracted from pure cultures of eight bacterial and two fungal strains Genomic DNA from each culture was quantified before mixing The ZymoBIOMI...

Страница 13: ...uencing Figure 9 A Library preparation for shotgun metagenomic sequencing was performed in two different ways one by supplier I and one by an in house method Shotgun sequencing was performed on Illumi...

Страница 14: ...ting Ensure that none of the debris is transferred to the Zymo Spin III F Filter in the next step Low DNA Yield Input If the lysate does not pass through the column or is extremely viscous use less in...

Страница 15: ...mark of Qbiogene Inc Illumnia MiSeq Illumnia NexTera XT are trademarks or registered trademarks of Illumina Inc AcroMetrix is a trademark of Thermo Fisher Scientific Inc ZymoBIOMICS DNA Miniprep Kit i...

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