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Promega Corporation · 2800 Woods Hollow Road · Madison, WI  53711-5399 USA · Toll Free in USA 800-356-9526 · 608-274-4330 · Fax 608-277-2516

TM248 · Revised 12/18

 

www.promega.com

7.C.  Reaction Setup for Small Sample Numbers (continued)

An alternative protocol for large sample numbers is also provided (Section 4.A).

1. 

Thaw the Multiplex Master Mixes. Vortex for 5–10 seconds, and store on ice. Thaw the Nuclease-Free Water and 
Male Genomic DNA.

2. 

Determine the number of reactions to perform for each Multiplex Master Mix. For each sample there will be five 
reaction tubes, one for each Multiplex Master Mix. Include a positive Male Genomic DNA control and negative 
no-DNA control for each Multiplex Master Mix.

 

Multiplex 

Master Mix

 

# of Sample  

DNAs

Positive Control 

(Male Genomic 

DNA)

 

Negative Control 

(No DNA)

 

Total Reaction 

Tubes

A

1

1

B

1

1

C

1

1

D

1

1

E

1

1

 

3. 

Label the required number of reaction tubes as determined above. For the Perkin-Elmer Model 480 thermal 
cycler, use 0.5ml thin-walled GeneAmp

®

 reaction tubes, and for the GeneAmp

®

 PCR System 9600 or 9700 

thermal cycler, use 0.2ml thin-walled MicroAmp

®

 reaction tubes or MicroAmp

®

 optical 96-well reaction plate. 

Place the reaction tubes on ice.

4. 

Vortex the Multiplex Master Mixes for 5–10 seconds. Place 20µl of each Multiplex Master Mix in the 
appropriately labeled reaction tubes on ice.

5. 

For each DNA sample, prepare a genomic DNA mixture on ice following the table below.

 
Component

Single  

Reactions

Duplicate  

Reactions

Sample DNA

~250ng

~500ng

Taq

 DNA polymerase (5u/µl)

1µl

2µl

Nuclease-Free Water to a final volume of

25µl

50µl

 

For the positive Male Genomic DNA control reactions, combine 5µl of Male Genomic DNA, 1µl of 

Taq

 DNA 

polymerase (5u/µl) and 19µl of Nuclease-Free Water on ice. Vortex to mix.

 

For the negative no-DNA control, add 1µl 

Taq 

DNA polymerase (5u/µl) to 25µl of Nuclease-Free Water on ice. 

Vortex gently to mix.

6. 

Add 5µl genomic DNA or control mixture prepared in Step 5 to the appropriate reaction tubes containing the 
Multiplex Master Mixes on ice. Vortex to mix.

Содержание MD1531

Страница 1: ...Revised 12 18 TM248 T E C H N I C A L M A N U A L Y Chromosome Deletion Detection System Version 2 0 Instructions for Use of Product MD1531 For Research Use Only Not for use in diagnostic procedures...

Страница 2: ...oduct Components and Storage Conditions 3 3 System Requirements 3 3 A Template 3 3 B Thermal Cyclers 4 3 C Contamination Control 4 3 D Control Reactions 5 4 Amplification Reactions 6 4 A Reaction Setu...

Страница 3: ...x E contains a control primer pair that amplifies a unique region in both male and female DNA ZFX ZFY These control primer pairs are internal controls for the amplification reaction and the integrity...

Страница 4: ...o ensure success with the Y Chromosome Deletion Detection System Version 2 0 DNA should be free of contaminating protein and salts The DNA should not be sheared Poor quality DNA may result in increase...

Страница 5: ...sity of the bands indicate different DNA concentrations that result from variation in the A260 A280 ratio Figure 2 Gel image of 100ng based on A260 genomic DNA of varying quality The end lanes contain...

Страница 6: ...taminated with DNA Figure 1 lanes 2 4 6 8 and 10 Figure 3 Schematic representation of the Y Chromosome Deletion Detection System assay Sample DNA Positive Control Male Genomic DNA Negative Control No...

Страница 7: ...at 50090 or 50091 1X TBE buffer ethidium bromide aerosol resistant pipette tips UV transilluminator Caution Ethidium bromide is a suspected carcinogen Always wear gloves when working with ethidium bro...

Страница 8: ...vortexing for 5 10 seconds Add 5 l to appropriately labeled reaction tubes above on ice For the negative control no DNA add 5 l of Nuclease Free Water to the appropriately labeled reaction tubes above...

Страница 9: ...o preheat the instrument to 94 C before placing tubes into the machine Program for the Perkin Elmer Model 480 Thermal Cycler Preheat the thermal cycler to 94 C before placing tubes inside Cycling Prof...

Страница 10: ...e recommend using a 4 NuSieve 3 1 Plus TBE buffer precast gel Alternatively cast a 4 NuSieve 3 1 agarose gel in 1X TBE buffer containing 0 5 g ml ethidium bromide For instructions for the preparation...

Страница 11: ...ed from the ZFY ZFX genes The absence of these products is indicative of a problem with that particular PCR amplification If the control bands are present with the Male Genomic DNA control but not wit...

Страница 12: ...n products on the agarose gel If your negative controls show no detectable PCR products these nonspecific bands should have no effect on analysis Figure 4 Y chromosome deletion analysis The amplificat...

Страница 13: ...kin Elmer Model 480 thermal cycler use 0 5ml thin walled GeneAmp reaction tubes and for the GeneAmp PCR System 9600 or 9700 thermal cycler use 0 2ml thin walled MicroAmp reaction tubes or MicroAmp opt...

Страница 14: ...le DNA degraded or of poor quality Repeat reactions sample DNA but present in control You may need to re isolate sample DNA We recommend the Wizard Genomic DNA Purification Kit or MagneSil KF Genomic...

Страница 15: ...bleach solution before and after use 6 References 1 Skaletsky H et al 2003 The male specific region of the human Y chromosome is a mosaic of discrete sequence classes Nature 423 825 37 Especially not...

Страница 16: ...P1193 Mineral Oil 12ml DY1151 DNA Purification Systems Product Size Cat Wizard Genomic DNA Purification Kit 100 isolations 300 l A1120 500 isolations 300 l A1125 100 isolations 10ml A1620 MagneSil KF...

Страница 17: ...For the Perkin Elmer Model 480 thermal cycler use 0 5ml thin walled GeneAmp reaction tubes and for the GeneAmp PCR System 9600 or 9700 thermal cycler use 0 2ml thin walled MicroAmp reaction tubes or...

Страница 18: ...h the beaker or mark the level of the liquid in the beaker 5 Mix to wet agarose 6 Soak the agarose for 15 minutes at room temperature 7 Heat the beaker in a microwave until the solution boils 8 Boil t...

Страница 19: ...imental sample Multiplex A Master Mix Samples STS Locus Size of Product bp Map Position SY254 DAZ 380 18 SY157 DYS240 290 20 SY81 DYS271 209 2 SY130 DYS221 173 11 SY182 KAL Y 125 5 SMCX 83 Control Mul...

Страница 20: ...ega com TM248 Revised 12 18 Multiplex D Master Mix Samples STS Locus Size of Product bp Map Position SY133 DYS223 177 12 SY152 DYS236 125 15 SY124 DYS215 109 8 SMCX 83 Control Multiplex E Master Mix S...

Страница 21: ...eports of a positive SY133 signal in some samples with confirmed AZFb deletions suggesting possible genetic variants for this locus 4320MA09_3A SRY DYS271 DYS148 DYS273 KALY DYS212 SMCY DYS215 DYS218...

Страница 22: ...13 2014 2017 2018 Promega Corporation All Rights Reserved GoTaq MagneSil and Wizard are registered trademarks of Promega Corporation GeneAmp is a registered trademark of Roche Molecular Systems Inc La...

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