background image

 

2.

 

Switch on SYSTEM (2). 

3.

 

Switch on COMPONENTS (3). 

4.

 

Make sure that lasers are on. Laser key should be in position “I”. (4) 

5.

 

Switch on the computer. 

6.

 

Turn on Cool LED (by pressing 

Big blue on/off button

), if you need it for visual 

examination and don’t forget to close the shutter when you don’t need it or at the end 
of your session. 

 

7.

 

Login: LSMuser (password: Useme!11) 

8.

 

Open  

ZEN Blue  

Software and press “ZEN System” -> 

Restart the ZEN 

if it is open! 

(preventing bugs and accidental objective crash)S 

9.

 

“Image Processing” is for offline analysis of your images, please do not use it here 

 

VIII.

 

Visual examination of the sample 
 

1.

 

Put mechanical switch on the right hand side of the microscope to the ”Eye” position. 

2.

 

Press “Locate” in the main microscope menu. 

3.

 

Since this is an upright system, changing objectives can only be manually done by 
rotating the objective revolver. Rotation should work very easily when objectives are in 
the “up” position. 

4.

 

For imaging or visual inspection, the objectives must be lowered entirely with the black 
wheel in front of the microscope stand. 

5.

 

Please make sure that the chosen objective corresponds to the one shown in the 
software. If this is not the case, please restart the system. (Otherwise, your pinhole 
and pixel sizes, as well as the sectioning thickness are all incorrect.) 

6.

 

If you wish to view your sample in Brightfield mode, press the “TL” button 

7.

 

For visual examination of fluorescence, press the buttons DAPI, GFP or RFP 

8.

 

Before switching to acquisition mode, close transmitted and reflected light shutters by 

pressing ‘off’ and turn off the Cool LED

 by pressing ON/Off button  

 
 

IX.

 

Acquiring confocal images 

 

Summary of Contents for LSM800-02

Page 1: ...an Apochromat 40x NA 1 2 Water not mounted Laser lines 405 488 561 640 nm Detectors Two very sensitive Gallium arsenide phosphide photomultiplier tube GaAsP PMTs detectors with free choice of the spec...

Page 2: ...the main microscope menu 3 Since this is an upright system changing objectives can only be manually done by rotating the objective revolver Rotation should work very easily when objectives are in the...

Page 3: ...ed dyes are not set to the 1st detector due to the Variable dichroic arrangement If you are using the detector for transmitted light ESID activate ESID represented in the light path scheme Adjust inte...

Page 4: ...ber of pixels and the pixel size according to Nyquist sampling criteria Note More pixel than suggested by the software as optimal rarely make sense On the other hand feel free to decrease the pixel nu...

Page 5: ...s tab Important to make sure that the software images the positions in the order you added them make sure that you DISABLE the feature tile regions positions in the options menu of the Tiles bar see p...

Page 6: ...rked with a home logo as this setting will be used in the next startup of the system and might cause potential damage to GaAsP PMTs 2 Close the ZEN Software 3 Shut down the computer 4 Turn off the coo...

Page 7: ...ser should be avoided at all times Laser safety goggles are situated at all workspaces and should be used in any situation where potential contact of eyes with Laser light of the classes 3B or 4 is po...

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