Supermicro Supero PDSML-LN1+ User Manual Download Page 97

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Appendix C: Software Installation

C-13

*Note

: SD III Software Revision 1.0 can be downloaded from our Web Site at:

ftp://ftp.supermicro.com/utility/Supero_Doctor_III/. You can also download SDIII

User's Guide at: http://www.supermicro.com/PRODUCT/Manuals/SDIII/UserGuide.

pdf. For Linux, we will still recommend Supero Doctor II.

Supero Doctor III Interface Display Screen-II (Remote Control)

Summary of Contents for Supero PDSML-LN1+

Page 1: ...PDSML LN1 PDSML LN2 USER S MANUAL Revision 1 1...

Page 2: ...CRO COMPUTER SHALL NOT HAVE LIABILITY FOR ANY HARDWARE SOFTWARE OR DATA STORED OR USED WITH THE PRODUCT INCLUDING THE COSTS OF REPAIRING REPLACING INTEGRATING INSTALLING OR RECOVERING SUCH HARDWARE SO...

Page 3: ...installed Manual Organization Chapter 1 describes the features specifications and performance of the PDSML LN1 PDSML LN2 motherboard and provides detailed information about the chipset Chapter 2 provi...

Page 4: ...1 3 PC Health Monitoring 1 10 1 4 Power Configuration Settings 1 10 1 5 ACPI Features 1 11 1 6 Power Supply 1 12 1 7 Super I O 1 13 Chapter 2 Installation 2 1 Static Sensitive Devices 2 1 2 2 Processo...

Page 5: ...1 2 7 Jumper Settings 2 22 Explanation of Jumpers 2 22 GLAN Enable Disable 2 22 CMOS Clear 2 23 VGA Enable 2 23 Power Force On Enable 2 24 I2C Bus to PCI PCI E Slots 2 24 2 8 Onboard Indicators 2 25 G...

Page 6: ...up 4 2 4 4 Advanced Setup 4 7 4 5 Security Setup 4 18 4 6 Boot Setup 4 19 4 7 Exit 4 20 Appendices Appendix A BIOS POST Error Messages A 1 Appendix B BIOS POST Codes B 1 Appendix C Installing Software...

Page 7: ...eck that the following items have all been included with your motherboard If anything listed here is damaged or missing contact your retailer All Included in the Retail Box Only One 1 Supermicro Mainb...

Page 8: ...ress Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Te...

Page 9: ...to the User All images and layouts shown in this manual were based upon the latest PCB Revision available at the time of publishing of this manual The motherboard you ve received may or may not look e...

Page 10: ...or removing components Note 5 IPMI and LAN2 are available on the PDSML LN2 only Figure 1 3 Motherboard Layout not drawn to scale SUPER PDSML LN1 LN2 LGA 775 CPU KB MS JLAN1 Intel 3000 North Bridge Fa...

Page 11: ...y Disk Connector IDE J3 IDE 1 Slot IPMI Note IPMI 2 0 Slot KB MS J28 PS 2 Keyboard Mouse Connectors LAN1 LAN2 JLAN1 2 Note Ethernet RJ45 Gigabit LAN Port1 Port2 Connections Power Fault PW3 Power Fault...

Page 12: ...T feature in the BIOS under Advanced Setting before install ing a supported OS Note visit www Intel com for CPU support and driver updates OS Licensing Support Intel Dual Core CPU supports Windows 200...

Page 13: ...One Fast UART 16550 compatible serial port Two Intel single port 82573 V L PCI E Gigabit Ethernet Controllers with two GLAN ports 82573L for LN1 Note PS 2 mouse and PS 2 keyboard ports Up to 6 USB Un...

Page 14: ...ns of the motherboard Z7 LGA775_PROCESSOR ICH 7R USB PORT_0 5 FWH LPC I O MS KB FDD SER 1 SER 2 PRI_IDE VRM 11 ADDR CTRL CTRL ADDR DATA DATA UDMA 100 PCI_32_BUS DDR2_667 533 400 VRM V11 DMI XGI_VGA S...

Page 15: ...tem memory DDR2 controller with two 64 bit interfaces and supports one or two channels of DDR2 SDRAM The I O Controller ICH7R provides the data buffering and interface arbitration re quired for the sy...

Page 16: ...ror message is sent to the screen The user can adjust the voltage thresholds to define the sensitivity of the voltage monitor Fan Status Monitor with Firmware Control The PC health monitor can check t...

Page 17: ...s hardware operating system and application software This enables the system to automatically turn on and off peripherals such as CD ROMs network cards hard disk drives and printers This also includes...

Page 18: ...lso support WOL without any connection to the WOL header The 3 pin WOL header is to be used with a LAN add on card only Note Wake On LAN requires an ATX 2 01 or above compliant power supply 1 6 Power...

Page 19: ...b s It also provides two high speed 16550 compatible serial communication ports UARTs Each UART includes a 16 byte send receive FIFO a programmable baud rate generator complete modem control capabilit...

Page 20: ...1 14 PDSML LN1 PDSML LN2 User s Manual Notes...

Page 21: ...its edges only do not touch its components peripheral chips memory modules or gold contacts When handling chips or modules avoid touching their pins Put the motherboard and peripherals back into their...

Page 22: ...e processor into the CPU socket before you install the CPU heatsink 2 Intel s boxed Pentium 4 CPU package contains the CPU fan and heatsink as sembly If you buy a CPU separately make sure that you use...

Page 23: ...d carefully lower the CPU straight down to the socket Do not drop the CPU on the socket Do not move the CPU horizontally or vertically Do not rub the CPU against the surface or against any pins of the...

Page 24: ...the protective film is not removed from the heatsink 5 Apply the proper amount of thermal grease on the CPU Note if your heatsink came with a thermal pad please ignore this step 6 If necessary rearran...

Page 25: ...ponents when installing the motherboard into the chassis 8 Repeat Step 6 to insert all four heatsink fasteners into the mounting holes 9 Once all four fasteners are securely inserted into the mounting...

Page 26: ...ry which is faster than the single channel non interleaved memory When ECC memory is used it may take 25 40 seconds for the VGA to display Notes 1 Due to chipset limitation 8GB Memory can only be supp...

Page 27: ...cal APIC 4 KB 3 00 3 99 Area Reserved for the chipset 2 MB 3 00 3 99 I O APIC 4 Kbytes 4 KB 3 00 3 99 PCI Enumeration Area 1 256 MB 3 00 3 76 PCI Express 256 MB 256 MB 3 00 3 51 PCI Enumeration Area 2...

Page 28: ...section for descriptions and pin definitions Figure 2 4 JF1 Header Pins SUPER PDSML LN1 LN2 2 5 Control Panel Connectors IO Ports The I O ports are color coded in conformance with the PC 99 specifica...

Page 29: ...T R L J10 PCI E x4 Slot5 PCI1 Slot4 PCI 33 MHz LE3 COM1 VGA Memory LE4 LE1 JLED Fan6 CPU Fan JPR1 PWRFault PWRSMB LN2 LN2 USB5 6 SATA0 SATA2 SATA3 Power LED The Power LED connection is located on pin...

Page 30: ...table on the right for pin definitions HDD LED Pin Definitions JF1 Pin Definition 13 5V 14 HD Active GLAN1 2 LED Pin Definitions JF1 Pin Definition 9 11 Vcc 10 12 Ground A B C A HDD LED B GLAN1 LED C...

Page 31: ...Flash ing Fan Fail PWR Fail Indicator Status State Definition Green PWR On System Normal Amber Redundant PWR Failure A B A OH Fan Fail LED B PWR Fail LED PWR Fail LED Pin Definitions JF1 Pin Definitio...

Page 32: ...on pins 3 and 4 of JF1 Attach it to the hardware reset switch on the computer case Refer to the table on the right for pin definitions Reset Button Pin Definitions JF1 Pin Definition 3 Reset 4 Ground...

Page 33: ...TX specification You can only use a 24 pin power supply cable on the mother board Make sure that the orientation of the connector is correct You must also use the 8 pin JPW2 processor power connector...

Page 34: ...WRFault PWRSMB LN2 LN2 USB5 6 SATA0 SATA2 SATA3 Chassis Intrusion A Chassis Intrusion header is located at JL1 Attach the appropriate cable to inform you of a chassis intrusion via the Supero Doctor S...

Page 35: ...GLAN1 E GLAN2 PDSML LN2 only Universal Serial Bus USB There are two Universal Serial Bus ports BP USB 1 2 J15 located on the I O back panel and additional four USB ports located at J46 FP USB 3 4 and...

Page 36: ...2 USB5 6 SATA0 SATA2 SATA3 ATX PS 2 Keyboard and PS 2 Mouse Ports The ATX PS 2 keyboard and PS 2 mouse are located next to the Back Panel USB ports on the motherboard See the table at right for pin de...

Page 37: ...5 Pin Definition 1 Ground Black 2 12V Red 3 Tachometer 4 PWM_Control Fan Headers The PDSML LN1 PDSML LN2 has six fan connections Fan1 to Fan6 Fan6 is designated as the CPU Cooling Fan Note all fans a...

Page 38: ...PWRSMB LN2 LN2 USB5 6 SATA0 SATA2 SATA3 Wake On Ring The Wake On Ring header is located at JWOR This function allows an incoming call to the modem to wake up your system when in the suspend state See...

Page 39: ...6 SBX PCI 33 MHz SI O VGA C T R L J10 PCI E x4 Slot5 PCI1 Slot4 PCI 33 MHz LE3 COM1 VGA Memory LE4 LE1 JLED Fan6 CPU Fan JPR1 PWRFault PWRSMB LN2 LN2 USB5 6 SATA0 SATA2 SATA3 Power LED The Power LED c...

Page 40: ...ote This feature is only available when using redundant Supermicro power supplies PWR Fault Pin Definitions Pin Definition 1 Pin 1 Fail Signal 2 Pin 2 Fail Signal 3 Pin 3 Fail Signal 4 Pin 4 Fail Sign...

Page 41: ...Intel 3000 North Bridge Fan4 24 Pin ATX PWR ICH7R South Bridge 8 pinPWR Battery USB1 2 VGA JLAN2 COM2 Floppy DIMM 2B PCI E x8 BIOS IDE JPF DIMM 1B DIMM 2A DIMM 1A Fan1 J8 Fan5 LAN CTRL2 JPL2 JPL1 WOL...

Page 42: ...Settings Explanation of Jumpers Tomodifytheoperationofthemotherboard jumpers can be used to choose between optional settings Jumpers create shorts between two pins to change the function of the conne...

Page 43: ...used to clear CMOS Instead of pins this jumper consists of contact pads to prevent the accidental clearing of CMOS To clear CMOS use a metal object such as a small screwdriver to touch both pads at th...

Page 44: ...Power Force On function If enabled the power will always stay on automatically If this function is disabled the normal setting the user needs to press the power button to power on the system Power For...

Page 45: ...PU Fan JPR1 PWRFault PWRSMB LN2 LN2 USB5 6 SATA0 SATA2 SATA3 GLAN LEDs There are two GLAN ports on the PDSML LN2 and one GLAN port on the PDSML LN1 Each Gigabit Ethernet LAN port has two LEDs The yell...

Page 46: ...sk drive cable has seven twisted wires A red mark on a wire typically designates the location of pin 1 A single floppy disk drive ribbon cable has two connectors to provide for two floppy disk drives...

Page 47: ...6 SATA0 SATA2 SATA3 IDE Connector There is one IDE Connector J3 on the motherboard See the table on the right for pin definitions IPMI 2 0 Slot For PDSML LN2 only There is an IPMI 2 0 Slot on the PDSM...

Page 48: ...2 28 PDSML LN1 PDSML LN2 User s Manual Notes...

Page 49: ...tall a CPU and heatsink Be sure that it is fully seated and then connect the chassis speaker and the power LED to the motherboard Check all jumper settings as well 7 Make sure to use the correct type...

Page 50: ...on 1 6 for details on recommended power supplies 2 The battery on your motherboard may be old Check to verify that it still sup plies 3VDC If it does not replace it with a new one 3 If the above steps...

Page 51: ...non interleaved SDRAM See Section 2 4 for details on installing memory Question Why does Microsoft Windows XP SP2 and Windows Vista show less memory than what is physically installed Answer Microsoft...

Page 52: ...ice s Answer The 80 wire 40 pin high density ATA100 66 IDE cable that came with your system has two connectors to support two drives This special cable must be used to take advantage of the speed the...

Page 53: ...displays etc in the CMOS The CMOS memory requires very little electrical power When the computer is turned off a backup battery provides power to the BIOS flash chip enabling it to retain system para...

Page 54: ...essage shown below appears briefly at the bottom of the screen during the POST Power On Self Test press the Delete key to activate the main Setup menu Press the Delete key to enter Setup Note Please l...

Page 55: ...arrow keys highlight the month day and year fields and enter the correct data Press the Enter key to save the data BIOS Date This feature allows the BIOS to display the date when the this version of B...

Page 56: ...or a later version When the SATA Controller Mode is set to Enhanced the following items will display Serial ATA SATA RAID Select Enable to enable the function of Serial ATA RAID The options are Enable...

Page 57: ...ions of these items Set the correct configurations accordingly The items included in the sub menu are Type This feature allows the user to select the IDE hard drive type The option Auto allows the BIO...

Page 58: ...block to be used in a multi sector transferring The options are Disabled 4 Sectors 8 Sectors and 16 Sectors LBA Mode Control This item determines if the BIOS will access the Primary IDE Master Device...

Page 59: ...are described in this section uBoot Features Access the submenu to make changes to the following settings QuickBoot Mode If enabled this feature will speed up the POST Power On Self Test routine by sk...

Page 60: ...nexpected loss of power The options are Last State Stay off and Power On Watch Dog If enabled this option will automatically reset the system if the system is not active for more than 5 minutes The op...

Page 61: ...re will allow the data stored in the base memory area block 512K 640K to be cached written into a buffer a storage area in the Static DRAM SDROM or to be written into L1 L2 cache inside the CPU to spe...

Page 62: ...5 PCI Exp x4 Slot 6 PCI 32 32 bit Slot 6 PCI Exp x8 MHz Access the submenu for each of the settings above to make changes to the fol lowing Option ROM Scan When enabled this setting will initialize t...

Page 63: ...decide which bus to send the debug information to The options are PCI LPC and Disabled USB Function Set to Enabled to enable the USB function to allow the user to key in a value to a USB item The opti...

Page 64: ...he CPU to detect and report hardware machine errors via a set of model specific registers MSRs The options are Disabled or Enabled Enhanced Intel Speed Step Available when supported by the CPU Select...

Page 65: ...artitions creating multiple virtual systems in one physical computer The options are Enabled and Disabled Note If there is any change to this setting you will need to power off and restart the system...

Page 66: ...he options are IRQ3 and IRQ4 Serial Port B This setting allows you to decide how Serial Port B is controlled The options are Enabled user defined Disabled and Auto BIOS or OS controlled Mode This feat...

Page 67: ...city It is not a setting View DMI Event Log Highlight this item and press Enter to view the contents of the event log Event Logging This setting allows you to Enable or Disable event logging ECC Event...

Page 68: ...This item allows the user to choose from the available options the desired console type for console redirection The options are VT100 VT100 8bit PC ANSI 7bit PC ANSI VT100 and VT UTF8 Flow Control Th...

Page 69: ...ulation PWM Select 3 pin if your chassis came with 3 pin fan headers Select 4 pin if your chas sis came with 4 pin fan headers Select Workstation if your system is used as a Workstation Select Server...

Page 70: ...assword has not been used and Set means a supervisor password has been entered User Password Is This item indicates if a user password has been entered for the system Clear means such a password has n...

Page 71: ...ighlighting a setting with a or will expand or collapse that entry See details on how to change the order and specs of boot devices in the Item Specific Help window All Boot BIOS settings are describe...

Page 72: ...lity Exit Discarding Changes Highlight this item and hit Enter to exit the BIOS Setup utility without saving any changes you may have made Load Setup Defaults Highlight this item and hit Enter to load...

Page 73: ...During the Power On Self Test POST the BIOS will check for problems If a problem is found the BIOS will activate an alarm turn on LED indicators or display a message A 1 BIOS POST Beep Codes Beeps Err...

Page 74: ...key switch Unlock the system to proceed Monitor type does not match CMOS Run SETUP Monitor type not correctly identified in Setup Shadow Ram Failed at offset nnnn Shadow RAM failed at offset nnnn of...

Page 75: ...s POST did not complete successfully POST loads default values and offers to run Setup If the failure was caused by incorrect values and they are not corrected the next boot will likely fail On system...

Page 76: ...oftware NMI Failed ServerBIOS2 test error Cannot generate software NMI Non Maskable Interrupt Fail Safe Timer NMI Failed ServerBIOS2 test error Fail Safe Timer takes too long Device Address Conflict A...

Page 77: ...ully tested nnnn kB System RAM Passed Where nnnn is the amount of system RAM in kilobytes successfully tested One or more I2O Block Storage Devices were excluded from the Setup Boot Menu There was not...

Page 78: ...d Write down and follow the information shown on the screen Press F2 to enter Setup Optional message displayed during POST Can be turned off in Setup PS 2 Mouse PS 2 mouse identified Run the I2O Confi...

Page 79: ...attempt to initialize video and write the error in the top left corner of the screen The following is a list of codes that may be written to port 80h Appendix B BIOS POST Codes POST Code Description 0...

Page 80: ...Shadow system BIOS ROM 3Ah Auto size cache 3Ch Advanced configuration of chipset registers 3Dh Load alternate registers with CMOS values 41h Initialize extended memory for RomPilot 42h Initialize int...

Page 81: ...80h Disable onboard Super I O ports and IRQs 81h Late POST device initialization 82h Detect and install external RS232 ports 83h Configure non MCD IDE controllers 84h Detect and install external para...

Page 82: ...te QuietBoot optional B6h Check password optional B7h Initialize ACPI BIOS B9h Prepare Boot BAh Initialize SMBIOS BBh Initialize PnP Option ROMs BCh Clear parity checkers BDh Display MultiBoot menu BE...

Page 83: ...Eh Shadow Boot Block EFh System memory test F0h Initialize interrupt vectors F1h Initialize Run Time Clock F2h Initialize video F3h Initialize System Management Manager F4h Output one beep F5h Clear H...

Page 84: ...B 6 PDSML LN1 PDSML LN2 User s Manual Notes...

Page 85: ...packaged with your motherboard Note that the current version of the ICH7R SATA RAID Utility can only support Windows XP 2000 2003 Operating Systems Serial ATA SATA Serial ATA SATA is a physical storag...

Page 86: ...D partition size without any data Configuring BIOS settings for SATA RAID Functions Native Mode 1 Press the Del key during system bootup to enter the BIOS Setup Utility Note If it is the first time po...

Page 87: ...rs after Power On Self Test b When you see the above screen press the Ctrl and the I keys simultane ously to have the main menu of the SATA RAID Utility appear Note All graphics and screen shots shown...

Page 88: ...ve and press Space to select it A triangle appears to confirm the selection of the drive f Use the Up Arrow Down Arrow keys to select the stripe size ranging from 4 KB to 128 KB for the RAID 0 array a...

Page 89: ...ct the previous menu c When RAID Level item is highlighted press the Up Arrow Down Arrow keys to select RAID 1 Mirror and hit Enter d When the Capacity item is highlighted enter your RAID volume capac...

Page 90: ...own Arrow keys to select the stripe size from 4 KB to 128 KB for your RAID 10 and hit Enter The default setting is 6 4KB Note For a server please use a lower stripe size and for a multimedia system us...

Page 91: ...a drive and press Space to select it A triangle appears to confirm the selection of the drive f Use the Up Arrow Down Arrow keys to select the stripe size ranging from 4 KB to 128 KB for the RAID 5 ar...

Page 92: ...rives when deleting a RAID set a From the main menu select item2 Delete RAID Volume and press Enter b Use the Up Arrow Down Arrow keys to select the RAID set you want to delete and press Del A Warning...

Page 93: ...ID set drive A Warning message displays d Press Y to reset the drive or type N to go back to the main menu Exiting the Intel Matrix Storage Manager Utility a From the main menu select item4 Exit and p...

Page 94: ...ontroller from the list indicated in the XP 2000 2003 Setup Screen and press the Enter key f Press the Enter key to continue the installation process If you need to specify any additional devices to b...

Page 95: ...h your motherboard Note for the Windows 2003 OS please refer to Page C 10 Driver Tool Installation Display Screen Note Click the icons showing a hand writing on the paper to view the readme files for...

Page 96: ...ltages and fan status See the Figure below for a display of the Supero Doctor III interface Note 1 The default user name and password are ADMIN Note 2 In the Windows OS environment the Supero Doctor I...

Page 97: ...d from our Web Site at ftp ftp supermicro com utility Supero_Doctor_III You can also download SDIII User s Guide at http www supermicro com PRODUCT Manuals SDIII UserGuide pdf For Linux we will still...

Page 98: ...C 14 PDSML LN1 PDSML LN2 User s Manual Notes...

Page 99: ...ted to result in significant injury or loss of life or catastrophic property damage Accordingly Supermicro disclaims any and all liability and should buyer use or sell such products for use in such ul...

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