For Research Use Only.
Not for use in diagnostic procedures.
30251 Rev F, Saphyr Networking and Setup Guide
Page 23 of 36
Introduction of Bionano Compute Servers (optional purchase)
Our recommended configuration includes one Bionano Compute Server. You must have at least one Saphyr
Compute Server before adding any Bionano Compute systems.
Type
Requirements/Specifications
Provided By
Bionano (additional purchase)
warious
•
CentOS 7.x
•
Python
•
Perl
•
R
•
Son of Grid Engine (SGE)
Space
•
2U rackmount server (to be provided by customer)
•
Rails and cords supplied with server
Power
•
Dual 1600 W power supplies (Recommended: APC Smart-UPS 3000VA LCD RM 2U UPS
- rack mounted)
•
2 6’ NEMA 5-15P to IEC320-C13 power cables. Users outside of the United States are
required to supply two 2m long, country specific IEC 60320-C13 power cord (in some cases,
the FSE may be able to provide the suitable power cord).
Network
Minimum 1, 1 GB Ethernet connection per node (4 nodes / server)
See Saphyr Compute Networking Options section for more details.
Introduction of Commands Used during Compute Server Installation
Powering On
It is required that Saphyr1A node be powered on before all other nodes. It should take ~1 minute to completely boot
Saphyr1a after pressing the power button. Attach a monitor to Saphyr1a and ensure powerup up successful.
Once Saphyr 1A is booted up, remaining nodes from Saphyr1b to Saphyr1d can be powered on.
Power Down
Login into each Node in reverse order from power on sequence and input the following command:
sudo shutdown now
Restarting Nodes
Restarting Node command line:
sudo reboot
Hard Reset on Server
Depress power button for 5 seconds
