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Setting   up   Sequential   Scanning   (Recommended)   

 

1.  From the left hand margin of the screen under Acquisition 

Mode select the Seq button to open the sequential mode 
window 
 

2.  Select the + button which will add a scan.  Each scan 

corresponds to a single laser/detector combination.  
Therefore if you are imaging in 2 channels then you will need 
to add 2 sequential scans. 

 
 
3.  For a GFP-RFP setup for example you would 

select the newly added Scan 1 button then 
configure the beam path setup so that only the 
488nm laser and the detector assigned to GFP 
are active.  Use the vertical slide bars to turn all 
other laser lines off.  Uncheck the other detectors 
to inactivate them. 
 

4.  Now select the Scan 2 button and repeat the 

procedure but this time enable the laser line and 
detector for RFP and switch off the first detector 
and 488 laser by setting to 0% power. 

 
5.  Now when you scan the lasers/detectors are 

sequentially turned on and off rapidly to avoid cross talk. 

 
6.  Note that there are 3 sequential scan options: 

Between lines- 

(Recommended) The laser currently scanning switches on a line 

by line basis.  I.e. one line of the GFP channel is imaged, then one line of the 
RFP channel etc. 

Between frames-

An entire image of one channel is created first, then the laser 

switches and acquires an image of the second channel.   

Between stacks-

If acquiring a Z stack, then the stack of Scan 1 (GFP) is 

acquired first then the stack of Scan 2 is acquired (RFP).   
 

7.  Press the Save button in the sequential scan window and save to your folder on 

the D: Disk.  Include which wavelengths the sequential scan settings relate too, 
to make it easy to select another time. 

 
 
 
 
 
 
 

Содержание SP5 confocal

Страница 1: ...smbhost microscope users microscope user manuals Leica SP5 Facility Usage Policy 1 You must have the relevant Risk Assessment COSHH form for the work you are undertaking before using imaging facility...

Страница 2: ...ting 8 Simultaneous vs Sequential scanning modes 8 Setting up Sequential Scanning Recommended 9 Image Optimisation Procedure 10 Capturing a Multi Wavelength 2D Image Optical Slice 11 Saving Images 11...

Страница 3: ...e Laser Emission key to the ON position 3 The PC will boot automatically login using your windows user account If you have been trained on the system a user account will have been created for you 4 La...

Страница 4: ...andby 3 Close the LAS AF program and shut down the PC 4 Turn the Laser Emission key to the horizontal position 5 DO NOT SWITCH OFF THE LASER POWER SWITCH UNTIL THE ARGON FAN HAS STOPPED Continue to ne...

Страница 5: ...he XY speed of the stage by pressing the black buttons on the left side of the joystick base The black buttons on the right change the speed in Z Finding the sample by eye 1 Choose a fluorescence filt...

Страница 6: ...he coverglass 40x lenses can be either a dry or oil type The software menu used to select the lenses tells you if the lens requires oil Configuration Menu Turning the Lasers on 1 Select Configuration...

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Страница 8: ...h the width of the slider to the emission spectrum of the dye Avoid overlapping the spectral sliders with the excitation laser lines 5nm min separation 5 Select the Channel colour box for each detecto...

Страница 9: ...edure but this time enable the laser line and detector for RFP and switch off the first detector and 488 laser by setting to 0 power 5 Now when you scan the lasers detectors are sequentially turned on...

Страница 10: ...each channel a number of times and averaging the resulting signal Only use if you have a noisy image Image capture time is increased as is the likelihood of phoobleaching 7 Rotation allows the whole s...

Страница 11: ...re a few blue pixels Press the saturation indicator button again twice to see the channel images in their original colours Capturing a Multi Wavelength 2D Image Optical Slice 1 If you have followed th...

Страница 12: ...cus using the joystick Z control until you find the top bottom of your sample Click on the Begin arrow on the diagram to record that position Then move to the opposite end of the sample and click the...

Страница 13: ...d box allows you to define how many images should be captured in XY For example type 2x2 for a square grid of 4 tiles 5 Click on the rubbish bin button to remove the scan field setting 6 You can custo...

Страница 14: ...itions button will highlight within the stage area the fields of view you have marked for scanning 7 You can delete a single position using the Clear Position button or delete all using the rubbish bi...

Страница 15: ...ect the Delete button 5 To save a copy of the image with the scale bar right click on the image then select Snapshot all Exporting Images 1 To export an experiment or single image right click on it in...

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