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SYS_FAN1/2/3/4_FAN:

4-Pin FAN Connector

Pin

Signal

GND

+12V

FAN_TACH

FAN_PWM

Use this header to connect the cooling fan to your motherboard to keep the
system stable and reliable.

Note:

A 4-pin fan is required for fan speed control.

FPIO:

Front Panel Connector

Signal

Pin

Signal

PWR LED+

FP_PWR

KEY

PWRLED-

ID_LED-

FAULT_LED1-

HDDLED-

FAULT_LED2-

PWR_SW#

LAN1

GND

LAN1_ACTLED-

RST_SW#

SMB S SDA

GND2

SMB S SCL

SYS_ID_SW#

INTRUSION#

TEMP_SENSOR

LAN2

NMI_SW#

LAN2_ACTLED-

J16:

PSMI Connector

Pin

Signal

SMB_CLK

SMB_DAT

SMB_ALERT#

GND V3P3

USB3_1:

Front USB3.0 Header

Signal

Pin

Signal

+5V

P0_RX_N

P0_RX_P

GND

P0_TX_N

P0_TX_P

GND

P0_N

P0_P

OC_N

P1_P

P1_N

GND

P1_TX_P

P1_TX_N

GND

P1_RX_P

P1_RX_N

+5V

Key

Summary of Contents for S5539

Page 1: ...rosoft Corporation Winbond is a trademark of Winbond Electronics Corporation Notice Information contained in this document is furnished by MiTAC International Corporation and has been reviewed for acc...

Page 2: ...6 Tips on Installing Motherboard in Chassis 19 2 7 Installing the Memory 21 2 8 Attaching Drive Cables 25 2 9 Installing Add In Cards 26 2 10 Connecting External Devices 27 2 11 Installing the Power...

Page 3: ...elding 1 x S5539 Quick Installation Guide 1 x TYAN Driver CD 2 x SATA Single Cable 1 x external USB 3 0 Cable optional IMPORTANT NOTE Sales samples may not come with any of the accessories listed abov...

Page 4: ...ng requirements for today s IT environments Remember to visit the TYAN website at http www tyan com There you can find all the information on all TYAN products as well as all the supporting documentat...

Page 5: ...iant baseboard management controller BMC Supports storage over IP and remote platform flash USB 2 0 virtual hub AST2400 iKVM Feature 24 bit high quality video compression 10 100 Mb s MAC interface BIO...

Page 6: ...to 1920x1200 Chipset Aspeed AST2400 Input Output USB 4 USB3 0 ports 2 at rear 2 via cable 1 Type A USB2 0 port COM 2 ports 1 at rear 1 via cable VGA 1 D Sub 15 pin VGA port RJ 45 2 GbE ports 1 Dedicat...

Page 7: ...10 C 35 C 50 F 95 F Non operating Temp 40 C 70 C 40 F 158 F In Non operating Humidity 90 non condensing at 35 C RoHS RoHS 6 6 Compliant Yes Package Contains Motherboard 1 S5539 Motherboard Manual 1 W...

Page 8: ...t conditions MiTAC recommends wearing a static safety wrist strap 2 Hold the motherboard by its edges and do not touch the bottom of the board or flex the board in any way 3 Avoid touching the motherb...

Page 9: ...tyan com 9 2 1 Board Image S5539GM4NR D41 2T This picture is representative of the latest board revision available at the time of publishing The board you receive may not look exactly like the above...

Page 10: ...http www tyan com 10 2 2 Block Diagram S5539 Block Diagram...

Page 11: ...http www tyan com 11 2 3 Motherboard Mechanical Drawing...

Page 12: ...ion available at the time of publishing The board you receive may not look exactly like the above diagram The DIMM slot numbers shown above can be used as a reference when reviewing the DIMM populatio...

Page 13: ...J27 24 4 pin Fan Connector J17 12 NGFF M 2 connector J26 25 24 pin Power Connector PWR1 13 USB3 0 Header USB3_1 26 IPMB Pin Header J3 Sockets Chipset Buttons A CPU Heatsink E AST2400 U16 B BMC Socket...

Page 14: ...ID_LED PWRLED 5 6 ID_LED HDDLED 7 8 FAULT_LED1 HDDLED 9 10 FAULT_LED2 PWR_SW 11 12 LAN1_ACTLED GND 13 14 LAN1_ACTLED RST_SW 15 16 SMB S SDA GND2 17 18 SMB S SCL SYS_ID_SW 19 20 INTRUSION TEMP_SENSOR...

Page 15: ...12 17 18 SMB_CLK VCC3_AUX 19 20 PWM3 SATA0 5 7 pin vertical SATA3 0 Connector Blue 7 1 Name TYPE Description S1 GND Gound S2 TX Different Tranmit Signal S3 TX Different Transmit Signal S4 GND Gound S5...

Page 16: ...ND BMC_SMB_CLK 3 4 NC 2PHD_3 Chassis Intrusion Header Open Default Short Pin 1 2 Signal BDX_INTRUDER_N GND Open Use this header to disable the system chassis intrusion alarm Short Use this header to t...

Page 17: ...oot device SW1 ID LED Button Signal Pin Pin Signal FP_IDLED_BTN_N 1 2 GND SW2 Reset Button You can reset the system by using this button SW3 Power Button You can power on the system by using this butt...

Page 18: ...the motherboard may not look exactly like the one you purchased Therefore the illustrations should be held for your reference only Heat sink Installation The CPU heat sink will ensure that the proces...

Page 19: ...simply lay the motherboard inside the chassis and align the screw holes of the motherboard to the studs inside the case If there are any studs missing you will know right away since the motherboard w...

Page 20: ...ad of metal Although the plastic studs are usable MiTAC recommends using metal studs with screws that will fasten the motherboard more securely in place Below is a chart detailing what the most common...

Page 21: ...mended for your motherboard This platform supports four 2 2 DDR4 DIMM 2400 by Intel CPU type slots two Memory channels Registered DDR4 Up to 64GB Unregistered DDR4 Up to 128GB U DDR4 1 2V data transfe...

Page 22: ...Quantity of memory installed 1 2 3 4 CPU_DIMM_A0 CPU_DIMM_A1 CPU_DIMM_B0 CPU_DIMM_B1 NOTE 1 indicates a populated DIMM slot 2 Use paired memory installation for max performance 3 Populate the same DIM...

Page 23: ...dimm per channel NOTE 2 2DPC Two dimm per channel Physical Ranks are used to calculate DIMM Capacity Supported DRAM Densities are 4Gb 8Gb 16Gb 32Gb Based on CPU model for example QDF number QK8B 1 4GH...

Page 24: ...ock a DIMM socket by Press the retaining clip outwardly in the following illustration 2 Align the memory module with the socket such that the DIMM NOTCH match the KEY SLOT on the socket 3 Seat the mod...

Page 25: ...owing illustrates how to make a SATA Cable connection If you are in need of SATA SAS cables or power adapters please contact your local sales representative 1 SATA drive cable connection 2 SATA drive...

Page 26: ...for your add in card and insert the card firmly Do not force any add in cards into any slots if they do not seat in place It is better to try another slot or return the faulty card rather than damagin...

Page 27: ...LED Bi color LED Green and Yellow 10G only for LINK ACTIVITY indications Right LED Bi color LED Green and Yellow for SPEED indications Description Left LED LED2 Link Activity Right LED LED1 Speed No...

Page 28: ...ons on making it this far You have finished setting up the hardware aspect of your computer Before closing up your chassis make sure that all cables and wires are connected properly especially SATA ca...

Page 29: ...to change and therefore may not match exactly what is displayed on screen This section describes the BIOS setup program The setup program lets you modify basic configuration settings The settings are...

Page 30: ...eemingly small change to the Chipset setup options may cause the system to become unstable or unusable 3 1 4 Setup Variations Not all systems have the same BIOS setup layout or options While the basic...

Page 31: ...e for options that can directly be changed within the Main Setup screen BIOS Information It displays BIOS related information Memory Information This displays the total memory size System Date Adjust...

Page 32: ...ng TPM settings NOTE If no TPM chipset is on the Trusted Computing submenu will not appear ACPI Settings System ACPI Parameters Hardware Health Configuration Hardware health Configuration Parameters O...

Page 33: ...Settings S5 RTC Wake Settings Serial Port Console Redirection Serial Port Console Redirection PCI Subsystem Settings PCI PCI X and PCI Express Settings CSM Configuration CSM Configuration Enable Disab...

Page 34: ...chipset is on the Trusted Computing submenu will not appear Security Device Support Enable or disable BIOS support for security device O S will not show Security device O S will not show Security Dev...

Page 35: ...nable ACPI Auto Configuration Enable or disable BIOS ACPI Auto Configuration Disabled Enabled Enable Hibernation Enables or disables System ability to Hibernate OS S4 Sleep State This option may not b...

Page 36: ...l help Disabled Enabled NOTE Auto Fan Control must be set to Enable PWM Minimal Duty Cycle menu will appear PWM Minimal Duty Cycle PWM Minima Duty Cycle 30 Duty Cycle 45 Duty Cycle 60 Duty Cycle BMC A...

Page 37: ...37 3 3 3 1 Sensor Data Register Monitoring When you enter the Sensor Data Register Monitoring submenu you will see the following dialog window pop out Please wait 8 10 seconds NOTE 1 SDR can not be m...

Page 38: ...http www tyan com 38...

Page 39: ...isabled LAN1 OPROM Enable Disable Load Option ROM For OnBoard LAN Enabled with PXE Disabled Onboard LAN2 X557 optional Enable Disable OnBoard LAN Devices Enabled Disabled LAN2 OPROM Enable Disable Loa...

Page 40: ...roller Enabled Disabled LAN4 OPROM Select LAN4 oprom Enabled with PXE Disabled NOTE The ISCSI function is only supported in LAN 3 Onboard VGA Enabled Disable ASPEED VGA Chassis Intrusion Detect ENABLE...

Page 41: ...eperate x4x4 Or Total x8 x4x4 x8 PCIE Slot 1 Link Width x4x4 x8 PCIE Slot Option ROM Setting OCP1 LAN Mezzanine Slot Enable Disable Load Oprom for OCP PCIE Slot Enabled Disabled OCP2 SAS Mezzanine Slo...

Page 42: ...Link Speed Configuration Auto Gen1 2 5 GT s Gen2 5 GT s Gen3 8 GT s OCP2 SAS Mezzanine Slot PCLe Slot Link Speed Configuration Gen1 Gen2 Gen3 Auto Gen1 2 5 GT s Gen2 5 GT s Gen3 8 GT s PCIE Slot1 Ena...

Page 43: ...com 43 3 3 6 Watchdog Timer Configuration Watch Dog Mode Watch Dog Mode Help Disabled POST OS PowerON NOTE Watch Dog Timer will appear when Watch Dog Mode is not set to Disabled Watch Dog Timer Watch...

Page 44: ...http www tyan com 44 3 3 7 SIO Configuration Super IO Chip Read only...

Page 45: ...disable Serial Port COM Enabled Disabled Device Settings Read only Change Settings Select an optimal setting for Super IO Device Auto IO 3F8h IRQ 4 IO 3F8h IRQ 3 4 5 6 7 9 10 11 12 IO 2F8h IRQ 3 4 5 6...

Page 46: ...disable Serial Port COM Enabled Disabled Device Settings Read only Change Settings Select an optimal setting for Super IO Device Auto IO 3F8h IRQ 4 IO 3F8h IRQ 3 4 5 6 7 9 10 11 12 IO 2F8h IRQ 3 4 5 6...

Page 47: ...tings Wake system from S5 Enable or disable system wake on alarm event Select Fixed time system will wake on the hr min sec specified Select dynamic time system will wake on the current time increase...

Page 48: ...ed Serial Port for Out Of Band Management Windows Emergency Services EMS Console Redirection Console redirection enable or disable Disabled Enabled Console Redirection Settings The settings specify ho...

Page 49: ...l port transmission speed The speed must be matched on the other side Long or noisy lines may require lower speeds 38400 9600 19200 115200 57600 Data Bits 8 7 Parity A parity bit can be sent with the...

Page 50: ...e Hardware RTS CTS VT UTF8 Combo Key Support Enable VT UTF8 Combination Key Support for ANSI VT100 terminals Enabled Disabled Recorder Mode With this mode enabled only text will be sent This is to cap...

Page 51: ...http www tyan com 51 3 3 9 2 Legacy Serial Redirection Settings Legacy Serial Redirection Port Select a COM Port to display redirection of Legacy OS and Legacy OPROM Messages COM1 COM2...

Page 52: ...ver OS through a serial port COM1 Terminal Type VT UTF8 is the preferred terminal type for out of band management The next best choice is VT100 and then VT100 See above in Console Redirection Settings...

Page 53: ...n sending data if the receiving buffers are full a stop signal can be sent to stop the data flow Once the buffers are empty a start signal can be sent to restart the flow Hardware flow control uses tw...

Page 54: ...sables 64bit capable Devices to be decoded in Above 4G Address Space Only if System supports 64 bit PCI decoding Enable Disabled SR IOV Supporting If system has SR IOV capable PCIe devices this option...

Page 55: ...http www tyan com 55 3 3 10 1 PCI Express settings Maximum Payload Set maximum payload of PCI express device or allow system BIOS to select the value Auto 128 Bytes 256 Bytes...

Page 56: ...rent Network Controls the execution of UEFI and legacy PXE OpROM Do not launch UEFI legacy Storage Controls the execution of UEFI and legacy PXE OpROM Do not launch UEFI legacy Video Controls the exec...

Page 57: ...ations Enabled Disabled Auto XHCI Hand off This is a workaround for OSes without XHCI hand off support The XHCI ownership change should be claimed by XHCI driver Enabled Disabled EHCI Hand off This is...

Page 58: ...vice reset time out USB mass storage device Start Unit command time out 20 sec 10 sec 30 sec 40 sec Device power up delay Maximum time the device will take before it properly reports itself to the Hos...

Page 59: ...anagement settings Common RefCode Configuration Displays and provides option to change Common RefCode settings Memory Configuration Displays and provides option to change Memory settings I O Configura...

Page 60: ...OS optimized for Hyper Threading Technology and disabled for other OS OS not optimized for Hyper Threading Technology When disabled only one thread Enable Disabled Execute Disable Bit XD can prevent...

Page 61: ...le Intel TXT Support Enables Intel Trusted Execution technology Configuration Please disable EV DFX Features when TXT is enabled Enabled Disable VMX Enables the vanderpool technology take effect after...

Page 62: ...http www tyan com 62 3 4 1 1 CPU Socket 0 Configuration Read only...

Page 63: ...http www tyan com 63...

Page 64: ...2 Advanced Power Management Configuration Power Technology Enable the power management features Custom Disabled Energy Efficient NOTE The items CPUP C State Control are available only when Power Tech...

Page 65: ...abled OS sets CPU frequency according load When disabled CPU frequency is set at max non turbo Enable Disabled Turbo Mode Turbo mode allows a CPU logical processor to execute a higher frequency when E...

Page 66: ...kage C State Limit C0 C1 state C2 state C6 non Retention state C6 Retention State CPU C3 Report Enable Disable CPU C3 ACPI C2 report to OS Recommended to be disabled Enable Disable CPU C6 Report Enabl...

Page 67: ...ommon RefCode Configuraion MMIOHBase MMIOH Base 63 32 must be between 4032 4078 56T 48T 24T 16T 4T MMIO High Size Select MMIO High Size 256G 128G 512G 1024G Numa Enable or Disable none uniform Memory...

Page 68: ...http www tyan com 68 3 4 4 Memory Configuration Enforce POR Enable to enforce POR restrictions for DDR frequency and voltage programming Auto Disabled...

Page 69: ...http www tyan com 69 3 4 4 1 Memory Topology Configuration Read only...

Page 70: ...http www tyan com 70 3 4 4 2 Memory Thermal Configuration Set Throttling Mode Configure Thermal throttling mode Select OLTT or CLTT mode Disabled CLTT OLTT...

Page 71: ...http www tyan com 71 3 4 4 3 Memory RAS Configuration Correctable Error Threshold Correctable Error Threshold 1 32767 used for sparing tagging and leaky bucket...

Page 72: ...http www tyan com 72 3 4 5 I O Configuration Submenu Read only...

Page 73: ...l VT for Directed I O Configuration Submenu Intel VT for directed I O VT d Enable Disable Intel I O Virtualization Technology for Directed I O VT d by reporting the I O device assignment to VMM throug...

Page 74: ...http www tyan com 74 3 4 6 PCH Configuration...

Page 75: ...http www tyan com 75 3 4 6 1 PCH Devices Configuration PCH State after G3 Select S0 S5 for ACPI state after a G3 S0 S5 Last State...

Page 76: ...http www tyan com 76 3 4 6 2 PCH SATA Configuration...

Page 77: ...essive Link Power Mana Enable or Disable Aggressive Link Power Mana Disabled Enabled SATA Port 0 1 2 3 4 5 Enable Disable SATA Port Disabled Enabled Hot Plug Enable Disable SATA Ports Hot Plug Support...

Page 78: ...http www tyan com 78 3 4 7 USB Configuration xHCI Mode Mode of operation of xHCI controller Auto Smart Auto Disabled...

Page 79: ...http www tyan com 79 3 4 8 Miscellaneous Configuration Active Video Select active video type Onboard Device Offboard Device...

Page 80: ...http www tyan com 80 3 4 9 Runtime Error Logging Configuration System Errors System error enabling and logging setup option Disable Enable...

Page 81: ...an com 81 3 4 9 1 Memory Error Enabling Configuration Memory corrected Error enabling Enable disable Memory corrected errors Disable Enable Spare interrupt Select SMI CMCI Error Pin for spare interrup...

Page 82: ...http www tyan com 82 3 5 Server Management Press Enter to change the SEL configuration Enable Disable interfaces to communicate with BMC...

Page 83: ...Disabled Enabled Erase SEL Choose options for erasing SEL No Yes on next reset No on every reset When SEL is Full Choose options for reactions to a full SEL Do Nothing Erase Immediately Log EFI Statu...

Page 84: ...AN channel parameters statically or dynamically by BIOS or BMC Unspecified option will not modify any BMC network parameters during BIOS phase Current Setting Static DHCP NOTE When Configuration Addre...

Page 85: ...http www tyan com 85 3 6 Security Administrator Password Install or change the password User Password Install or change the password...

Page 86: ...isable Quiet Boot option Disabled Enabled Boot Option 1 Boot Option 2 Select the first boot device Device Name Disabled Wait For ESC If Error Enable or disable wait ESC key Function When chassis intru...

Page 87: ...oot Option Policy Controlls the placement of newly detected UEFI boot options Default place first place last 3 7 1 Delete Boot Option Configuration Delete Boot Option Sets the system boot order Device...

Page 88: ...any changes Save Changes and Reset Reset the system after saving the changes Discard Changes and Reset Reset system setup without saving any changes Save Changes Save changes done so far to any of the...

Page 89: ...http www tyan com 89 Save as User Defaults Save the changes done so far as User Defaults Restore User Defaults Restore the User Defaults to all the setup options Boot Override Device Name...

Page 90: ...1 Flash Utility Every BIOS file is unique for the motherboard it was designed for For Flash Utilities BIOS downloads and information on how to properly use the Flash Utility with your motherboard ple...

Page 91: ...xD0 0xDF DXE errors 0xE0 0xE8 S3 Resume PEI 0xE9 0xEF S3 Resume errors PEI 0xF0 0xF8 Recovery PEI 0xF9 0xFF Recovery errors PEI Standard Checkpoints SEC Phase Status Code Description 0x00 Note used Pr...

Page 92: ...ion North Bridge module specific 0x19 Pre memory South Bridge initialization is started 0x1A Pre Memory South Bridge initialization South Bridge module specific 0x1B Pre memory South Bridge initializa...

Page 93: ...odule specific 0x3F 0x4E OEM post memory initialization codes 0x4F DXE PIL is started PCI Error Codes 0x50 Memory initialization error Invalid memory type or incompatible memory speed 0x51 Memory init...

Page 94: ...aded 0xF5 0xF7 Reserved for future AMI progress codes Recovery Error Codes 0xF8 Recovery PPI is not available 0xF9 Recovery capsule is not found 0xFA Invalid recovery capsule 0xFB 0xFF Reserved for fu...

Page 95: ...ization is started 0x71 South Bridge DXE SMM initialization is started 0x72 South Bridge devices initialization 0x73 South Bridge DXE initialization South Bridge module specific 0x74 South Bridge DXE...

Page 96: ...Codes section below 0xAD Ready To Boot event 0xAE Legacy Boot event 0xAF Exit Boot Services event 0xB0 Runtime Set Virtual Address MAP Begin 0xB1 Runtime Set Virtual Address MAP End 0xB2 Legacy Optio...

Page 97: ...Devices are found 6 Flash update is failed 7 Reset protocol is not available 8 Platform PCI resource requirements cannot be met ACPI ASL Checkpoints Status Code Description 0x01 System is entering S1...

Page 98: ...explanation is also included for readers reference NOTE The red dot indicates the sensor Fan and Temp Sensor Location 1 Fan Sensor It is located in the third pin of the fan connector which detects the...

Page 99: ...the SYS_Air_Inlet Area M B_Air_Inlet Temperature of the MB_Air_ Inlet Area CPU0_DIMM_A0 Temperature of CPU0 DIMM A0 Slot CPU0_DIMM_A1 Temperature of CPU0 DIMM A1 Slot CPU0_DIMM_B0 Temperature of CPU0...

Page 100: ...http www tyan com 100 NOTE...

Page 101: ...serial and parallel ports are built in Bandwidth refers to carrying capacity The greater the bandwidth the more data the bus phone line or other electrical path can carry Greater bandwidth results in...

Page 102: ...ight bits of a byte of data along one wire and receives data on another single wire that is the data is transmitted in serial form one bit after another Parallel ports transmit the bits of a byte on e...

Page 103: ...ware that controls the system hardware Form factor an industry term for the size shape power supply type and external connector type of the Personal Computer Board PCB or motherboard The standard form...

Page 104: ...aster than the ISA bus Local buses are those which operate within a single system as opposed to a network bus which connects multiple systems PCI PIO PCI Programmable Input Output modes the data trans...

Page 105: ...it can keep two sets of memory addresses open simultaneously By transferring data alternately from one set of addresses and then the other SDRAM cuts down on the delays associated with non synchronou...

Page 106: ...oard or joystick port It is fast enough to support video transfer and is capable of supporting up to 127 daisy chained peripheral devices VGA Video Graphics Array the PC video display standard V SYNC...

Page 107: ...omprehensive compatibility reports for chassis memory and much more With all these convenient resources just a few keystrokes away users can easily find the latest software and operating system compon...

Page 108: ...ed by turning the equipment off and on the user is encouraged to try one or more of the following measures Reorient or relocate the receiving antenna Increase the separation between the equipment and...

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