Supermicro SuperServer 5039MS-H8TRF User Manual Download Page 1

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USER’S MANUAL

Revision 1.0

SuperServer

5039MS-H8TRF

Summary of Contents for SuperServer 5039MS-H8TRF

Page 1: ...USER S MANUAL Revision 1 0 SuperServer 5039MS H8TRF...

Page 2: ...operated in a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instruction manual may ca...

Page 3: ...necessary drivers utilities and the user s manual for your server Supermicro product manuals http www supermicro com support manuals Product drivers and utilities ftp ftp supermicro com Product safet...

Page 4: ...ring for Setup 16 Choosing a Setup Location 16 Rack Precautions 16 Server Precautions 17 Rack Mounting Considerations 17 Ambient Operating Temperature 17 Airflow 17 Mechanical Loading 17 Circuit Overl...

Page 5: ...Module Population Configuration 36 DIMM Module Population Sequence 36 Install Procedure 37 Expansion Modules 38 Motherboard Battery 40 3 4 Chassis Components 41 Hard Drives 41 System Cooling 44 Air S...

Page 6: ...SuperDoctor 5 58 Chapter 6 BIOS 6 1 Introduction 60 Starting the Setup Utility 60 6 2 Main Setup 61 6 3 Advanced Setup Configurations 63 4 4 Event Logs 84 4 5 IPMI 86 4 6 Security 88 4 7 Boot 91 4 8 S...

Page 7: ...Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Technical Support rma supermicr...

Page 8: ...rts are listed below Main Parts List Description Part Number Quantity Backplane BPN SAS 938H One Fans FAN 0133L4 Four CPU passisve heatsink SNK P0047PS One per node Air flow shroud MCP 310 93804 0B On...

Page 9: ...ocket Type LGA1151 Memory Four DIMM ECC UDIMM VLP memory up to 64 GB Integrated memory controller supports up to 64 GB of DDR4 VLP ECC UDIMM memory up to 2133MHz Chipset Intel PCH C236 chipset Expansi...

Page 10: ...powered on It is off during normal operation 3 Main Power button Used to apply or remove power from the power supply to the server system Whether on or off standby power to the system remains on Node...

Page 11: ...atures The front of the chassis includes 16 drive bays and the chassis control panel Control Panel Drive Bays 16 Figure 1 3 Chassis Rear View Rear Features The illustration below shows the features on...

Page 12: ...UID button Unit identifier button behind grid 5 UID LED Unit identifier indicator behind grid 6 LAN Two LAN ports by means of the MicroLP expansion module Node Power Button LED LED Appearance Descript...

Page 13: ...SSD F REV 1 00 DESIGNED IN USA BAR CODE J4 BT1 SW1 S SGPIO1 LED2 A C LED1 A C JSTBY1 JBT1 FAN1 JTPM1 JBR1 JI2C2 JI2C1 J5 JPME2 JPB1 JPG1 JWD1 JVRM2 JVR1 JVRM1 LED3 A C DIMMA1 DIMMA2 DIMMB1 DIMMB2 SAS1...

Page 14: ...I SATA3 Intel PCH SATA 3 0 Ports I SATA2 with SATA DOM Power IPMI_LAN Dedicated IPMI LAN Port J4 SGPIO Decoder Firmware update JIPMB1 System Management Bus Header for the IPMI Slot JSD1 SATA DOM Power...

Page 15: ...X USB 3 0 Type A 2133 1866 1600MHz IMVP8 INTEL LGA1151 PCIe x8 SLOT PCIe3 0_x8 8 0GT s SVID IMVP8 DDR4 CHA DIMMA0 DDR4 CHB DIMMB0 2133 1866 1600MHz 8GT s x4 DMI SATA III 6Gb s 2 X SATA SAS BP Intel PC...

Page 16: ...imately 30 inches of clearance in the back of the rack to allow sufficient space for airflow and access when servicing This product should be installed only in a Restricted Access Location dedicated e...

Page 17: ...ature If installed in a closed or multi unit rack assembly the ambient operating temperature of the rack environment may be greater than the room s ambient temperature Therefore consideration should b...

Page 18: ...es are provided to ensure your safety This unit should be mounted at the bottom of the rack if it is the only unit in the rack When mounting this unit in a partially filled rack load the rack from the...

Page 19: ...secures directly to the chassis an outer rail that secures to the rack and a middle rail which extends from the outer rail These assemblies are specifically designed for the left and right side of the...

Page 20: ...server from coming completely out of the rack when when the chassis is pulled out for servicing To mount the rail onto the chassis first release the inner rail from the outer rails 1 Pull the inner ra...

Page 21: ...side of the chassis with the holes in the inner rail 3 Slide the inner rail forward toward the front of the chassis and under the hooks until the quick release bracket snaps into place securing the ra...

Page 22: ...which bend outward Match the left front outer rail with the left rear outer rail and the same for the right rails 2 Align the round post in the rear rail B with the round hole at the end of the slot i...

Page 23: ...to the rack Keep the rail horizontal 2 Adjust the rail to reach just past the full depth of your rack making sure that rear bracket is level with the front bracket 3 Align the square pegs on the rear...

Page 24: ...er 1 Pull the middle rail out of the front of the outer rail and make sure that the ball bearing shuttle is locked at the front of the middle rail 2 Align the rear of the chassis rails with the middle...

Page 25: ...oad the heavy chassis from the rack without assistance Be sure to have sufficient assistance supporting the chassis when removing it from the rack Use a lift 1 Pull the chassis forward out the front o...

Page 26: ...re that power first be removed from the system Please follow the procedures given in each section 3 1 Removing Power Use the following procedure to ensure that power has been removed from the system T...

Page 27: ...ne Removing the Top Cover 1 If necessary remove power from the system as described in Section 3 1 2 Remove the three screws securing the cover to the chassis See Figure 3 1 3 Lift the cover from the c...

Page 28: ...th the node beside it If a node is pulled out of the chassis the hard drives associated with that node will power down Node 8 Fan 1 Fan 3 Fan 2 Fan 4 Node 7 Node 6 Node 5 Node 4 Node 3 Node 2 Node 1 1...

Page 29: ...hold down the release tab on the front of the node 3 Use the node handle to pull the node from the system Caution Except for short periods of time while swapping nodes do not operate the server with t...

Page 30: ...8TRF User s Manual 30 Connecting to a Node USB COM and serial port capabilties can be added to any node through the KVM port on the front Plug in the adapter dongle Figure 3 4 Adapter to Provide USB C...

Page 31: ...installed make sure that the plastic protective socket cover is in place and none of the socket pins are bent otherwise contact your retailer immediately Refer to the Supermicro website for updates on...

Page 32: ...Align the notches the semi circle cutouts on the processor with the socket keys 5 Once aligned carefully place the processor into the socket Do not drop the processor on the socket move or rub the pr...

Page 33: ...plate onto the processor The plastic protective cover on the load plate will pop off Save the cover to protect the socket if the processor is ever removed 7 Making sure the slot in the load plate slid...

Page 34: ...eady been applied 1 Place the heatsink on top of the CPU so that the four mounting holes are aligned with those on the heatsink retention mechanism 2 Screw in two diagonal screws such as the 1 and the...

Page 35: ...he motherboard in the sequence as show in the figure above 2 Hold and gently pivot the heatsink back and forth to loosen it from the CPU Do not use excessive force when dislodging the heatsink 3 Once...

Page 36: ...size and type will result in interleaved 128 bit memory which is faster than non interleaved 64 bit memory Check the Supermicro website for possible updates to memory support DIMM Module Population Co...

Page 37: ...t down into the memory slot Install Procedure Installing Memory 1 Remove power from the system as described in Section 3 1 2 Starting with P1 DIMMA1 push the release tabs outwards on both ends of the...

Page 38: ...ile PCIe card is mounted using a riser card to connect it to the motherboard expansion slot The riser card is pre installed on the motherboard Installing a Low Profile Expansion Card 1 Power down the...

Page 39: ...and Component Installation Figure 3 8 Expansion Modules Riser Card and Bracket MicroLP Expansion Module Low Profile Expansion Card Motherboard Expansion Slot for Riser Card Note Your motherboard may...

Page 40: ...ery 1 Remove power from the system as described in section 3 1 and remove the node from the chassis 2 Push aside the small clamp that covers the edge of the battery When the battery is released lift i...

Page 41: ...carriers and may be removed without powering down the system These carriers also help promote proper airflow through the drive bays Removing Hard Drive Carriers from the Chassis 1 Press the release b...

Page 42: ...my Drive from the Drive Carrier 1 Remove the hard drive carrier from the chassis as described in the previous section and lay the drive carrier on a flat surface 2 Remove the two screws securing the d...

Page 43: ...and so that the mounting holes in the drive align with those in the drive carrier 3 Secure the hard drive to the carrier with the four screws included with the hard drive 4 Use the open handle of the...

Page 44: ...em is operating and observe Do not run the server for an extended period of time with the top cover open 2 Remove the failed fan s power cord from the backplane 3 Simultaneously squeeze both release t...

Page 45: ...low to maximize fan efficiency Installing the Air Shroud 1 Remove the node from the chassis onto a flat non conductive surface 2 If necessary move any cables that interfere with the air shroud placeme...

Page 46: ...An amber light will be illuminated on the power supply when the power is off An illuminated green light indicates that the power supply is operating Changing the Power Supply 1 With the system runnin...

Page 47: ...herboard The UID switch is located at JUIDB1 which is next to the VGA port on the I O panel The UID LED LED5 is located next to the UID switch When you press the UID switch the UID LED will be turned...

Page 48: ...d Platform Module TPM Port 80 header is located at JTPM1 to provide TPM support and a Port 80 connection A TPM is a security device that supports encryption and authentication in hard drives It enable...

Page 49: ...Refer to the table below for pin definitions SMBus Header Pin Definitions Pin Definition 1 Data 2 Ground 3 Clock 4 No Connection SGPIO Header The S SGPIO1 Serial General Purpose Input Output header i...

Page 50: ...Two Ethernet ports are provided by means of an add on module mounted on the Micro LP expansion slot Unit Identifier Switch and LED A Unit Identifier UID switch and an LED indicator are located to the...

Page 51: ...Connector Pins Jumper Setting 3 2 1 3 2 1 CMOS Clear JBT1 is used to clear CMOS which will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally clearin...

Page 52: ...turer Mode Jumper Settings Jumper Setting Definition Pins 1 2 Normal Default Pins 2 3 Manufacturer Mode SMBus to PCI Slots Jumpers JI2 C1 and JI2 C2 allow you to connect the System Management Bus I2 C...

Page 53: ...interrupt signal for the application that hangs Watch Dog must also be enabled in BIOS The default setting is Reset Note When Watch Dog is enabled the user needs to write their own application softwa...

Page 54: ...C to SAS0 and SAS1 IPMI_LAN LED The yellow LED on the right indicates activity while the green amber LED on the left indicates the speed of the connection IPMI LAN LED Link LED Left and Activity LED R...

Page 55: ...onnection LAN1 2 LED Connection Speed Indicator LED Color Definition Off 10 Mb s Green 100 Mb s Amber 1 Gb s UID LED Indicator The UID LED Indicator located LED1 is next to the UID Button When you pre...

Page 56: ...B port on the system Note for older legacy OS s please use a method to slipstream the drivers 3 Select the partition on the drive in which to install Windows 4 Browse the USB folder for the proper dri...

Page 57: ...er option is to go to the Supermicro website at http www supermicro com products Find the product page for your motherboard here where you may download individual drivers and utilities to your hard dr...

Page 58: ...anagement Protocol SNMP SuperDoctor 5 comes in local and remote management versions and can be used with Nagios to maximize your system monitoring needs With SuperDoctor 5 Management Server SSM Server...

Page 59: ...Chapter 5 Software 59...

Page 60: ...used such as F1 F2 etc Each main BIOS menu option is described in this manual The Main BIOS screen has two main frames The left frame displays all the options that can be configured Grayed out options...

Page 61: ...ime Highlight System Date or System Time using the arrow keys Enter new values using the keyboard Press the Tab key or the arrow keys to move between fields The date must be entered in MM DD YYYY form...

Page 62: ...SuperServer 5039MS H8TRF User s Manual 62 Memory Information Total Memory This item displays the total size of memory available in the system Memory Speed This item displays the memory speed...

Page 63: ...ture to select the screen display between the POST messages and the OEM logo upon bootup Select Disabled to display the POST messages Select Enabled to display the OEM logo instead of the normal POST...

Page 64: ...Windows 7 installation since the native XHCI driver support is unavailable Use a SATA optical drive as a USB drive and USB CD DVD drives are not supported Disable this feature after the XHCI driver ha...

Page 65: ...pe of CPU CPU Signature Microcode Patch Max CPU Speed Min CPU Speed CPU Speed Processor Cores Hyper Threading Technology Intel VT x Technology Intel SMX Technology 64 bit EIST Technology CPU C3 State...

Page 66: ...ptions are Disabled and Enabled Adjacent Cache Line Prefetch Available when supported by the CPU The CPU prefetches the cache line for 64 bytes if this feature is set to Disabled The CPU prefetches bo...

Page 67: ...or on your keyboard to change the value Enter 0 to use the manufacture default setting 2 Core Ratio Limit Override This increases multiplies 2 clock speeds in the CPU core in relation to the bus speed...

Page 68: ...ble or disable the Package C State un demotion The options are Disabled C1 C3 and C1 and C3 C State Pre Wake This feature allows the user to enable or disable the C State Pre Wake The options are Disa...

Page 69: ...Use this feature to enable or disable the Intel Software Guard Extensions SGX SGX is a set of CPU instructions that increases software security The options are Disabled Enabled and Software Controlle...

Page 70: ...ntrol Use this feature to enable or disable DMI Virtual Channel 1 The options are Enabled and Disabled DMI VCm Control Use this feature to enable or disable the DMI Virtual Channel map The options are...

Page 71: ...nge this value The default setting is 75 SLOT1 Slot Power Limit Scale Use this feature to select the scale used for the slot power limit value The options are 1 0x 0 1x 0 01x and 0 001x CPU1 MICRO LP...

Page 72: ...bled Memory Configuration The following memory information will display Memory RC Version Memory Frequency Total Memory VDD DIMMA1 DIMMA2 DIMMB1 DIMMB2 Memory Timings tCL tRCD tRP tRAS Maximum Memory...

Page 73: ...ration The following PCH IO information will display Intel PCH RC Version Intel PCH SKU Name Intel PCH Rev ID PCI Express Configuration PCH DMI Link ASPM Control Use this feature to set the ASPM Activ...

Page 74: ...e EFI drvier for system boot Select Legacy to load a legacy driver for system boot The options are Legacy ROM and UEFI Driver SATA Port 0 Port 3 This item displays the information detected on the inst...

Page 75: ...rts 64 bit in the space above 4G Address The options are Enabled and Disabled SR IOV Support Use this feature to enable or disable Single Root IO Virtualization Support The options are Disabled and En...

Page 76: ...s the user the configure settings of Serial Port 1 Serial Port 1 Select Enabled to enable the selected onboard serial port The options are Enabled and Disabled Device Settings This item displays the s...

Page 77: ...6 7 9 10 11 12 and IO 2E8h IRQ 3 4 5 6 7 9 10 11 12 Intel Server Platform Services The following Intel Server Platform Services information will display ME BIOS Interface Version SPS Version ME FW St...

Page 78: ...ions are 7 Bits and 8 Bits COM1 Parity A parity bit can be sent along with regular data bits to detect data transmission errors Select Even if the parity bit is set to 0 and the number of 1 s in data...

Page 79: ...ays Enable legacy console redirection remains enabled when booting the OS The options are Always Enable and Bootloader SOL Console Redirection Select Enabled to use the SOL port for Console Redirectio...

Page 80: ...top Bits if slower devices are used The options are 1 and 2 SOL Flow Control Use this feature to set the flow control for Console Redirection to prevent data loss caused by buffer overflow Send a Stop...

Page 81: ...t Services EMS to communicate with a remote host server The options are COM1 and SOL COM2 Terminal Type Use this feature to select the target terminal emulation type for Console Redirection Select VT1...

Page 82: ...nd Enabled Trusted Computing Configuration Security Device Support If this feature and the TPM jumper on the motherboard are both set to Enabled onbaord security devices will be enabled for TPM Truste...

Page 83: ...ported by all operating systems The options are Sha 1 and Sha256 Device Select Use this feature to select the TPM version TPM 1 2 will restrict support to TPM 1 2 devices TPM 2 0 will restrict support...

Page 84: ...s item to enable or disable all features of the SMBIOS Event Logging during system boot The options are Enabled and Disabled Erasing Settings Erase Event Log If No is selected data stored in the event...

Page 85: ...MECI The Multiple Event Count Increment MECI counter counts the number of occurences that a duplicate event must happen before the MECI counter is incremented This is a numeric value The default value...

Page 86: ...he IPMI firmware installed in your system System Event Log Enabling Disabling Options SEL Components Select Enabled for all system event logging at bootup The options are Enabled and Disabled Erasing...

Page 87: ...o select the source of the IP address for this computer If Static is selected you will need to know the IP address of this computer and enter it to the system manually in the field If DHCP is selected...

Page 88: ...ion The options are Disable and Enable 4 6 Security This menu allows the user to configure the following security settings for the system Password Check Select Setup for the system to check for a pass...

Page 89: ...ement This submenu allows the user to configure the following Key Management settings Provision Factory Default Keys Select Enabled to install the default Secure Boot keys set by the manufacturer The...

Page 90: ...tabase from the manufacturer s defaults to the existing DB Select No to load the DB from a file The options are Yes and No Forbiden Signatures Set New Key Select Yes to load the DBX from the manufactu...

Page 91: ...riorities This option prioritizes the order of bootable devices that the system to boot from Press Enter on each entry from top to bottom to select devices If the item above set to Legacy UEFI Dual th...

Page 92: ...FI Dual Boot Option 15 Delete Boot Option Use this feature to remove a pre defined boot device from which the system will boot during startup The settings are any pre defined boot device NETWORK Drive...

Page 93: ...e Changes and Reset When you have completed the system configuration changes select this option to leave the BIOS setup utility and reboot the computer so the new system configuration parameters can t...

Page 94: ...eature select Save as User Defaults from the Exit menu and press Enter This enables the user to save any changes to the BIOS setup for future use Restore User Defaults To set this feature select Resto...

Page 95: ...s you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible beeps The numbers on the fatal error list on the followi...

Page 96: ...micro com support manuals AMI BIOS POST Codes User s Guide When BIOS performs the Power On Self Test it writes checkpoint codes to I O port 0080h If the computer cannot complete the boot process a dia...

Page 97: ...or assistance Only certified technicians should attempt to install or configure components Read this appendix in its entirety before installing or configuring components in the Supermicro chassis Thes...

Page 98: ...o considere los riesgos de la corriente el ctrica y familiar cese con los procedimientos est ndar de prevenci n de accidentes Al final de cada advertencia encontrar el n mero que le ayudar a encontrar...

Page 99: ...ken dient u zich bewust te zijn van de bij een elektrische installatie betrokken risico s en dient u op de hoogte te zijn van de standaard procedures om ongelukken te voorkomen Gebruik de nummers aan...

Page 100: ...mentaci n Attention Avant de brancher le syst me sur la source d alimentation consulter les directives d installation Circuit Breaker Waarschuwing Raadpleeg de installatie instructies voordat u het sy...

Page 101: ...brecorrientes del edificio Aseg rese de que el dispositivo de protecci n no sea superior a 250 V 20 A Attention Pour ce qui est de la protection contre les courts circuits surtension ce produit d pend...

Page 102: ...e energ a y del cable el ctrico quitado de los m dulos de fuente de alimentaci n antes de tener acceso el interior del chasis para instalar o para quitar componentes de sistema Attention Le syst me do...

Page 103: ...abels aangesloten op de voeding en van de behuizing te verwijderen Equipment Installation Warning Only trained and qualified personnel should be allowed to install replace or service this equipment Wa...

Page 104: ...tention Il est vivement recommand de confier l installation le remplacement et la maintenance de ces quipements des personnels qualifi s et exp riment s Warning This unit is intended for installation...

Page 105: ...a una de estas reas mediante la utilizaci n de una herramienta especial cerradura con llave u otro medio de seguridad Attention Cet appareil doit tre install e dans des zones d acc s r serv s L acc s...

Page 106: ...emblable ou quivalent recommand e par le fabricant Jeter les piles usag es conform ment aux instructions du fabricant Advertencia Existe peligro de explosi n si la bater a se reemplaza de manera incor...

Page 107: ...aanbevolen wordt Gebruikte batterijen dienen overeenkomstig fabrieksvoorschriften afgevoerd te worden Redundant Power Supplies Warning This unit might have more than one power supply connection All c...

Page 108: ...omloos te maken Advertencia Puede que esta unidad tenga m s de una conexi n para fuentes de alimentaci n Para cortar por completo el suministro de energ a deben desconectarse todas las conexiones Atte...

Page 109: ...dvertencia Cuando el sistema est en funcionamiento el voltaje del plano trasero es peligroso Tenga cuidado cuando lo revise Attention Lorsque le syst me est en fonctionnement des tensions lectriques c...

Page 110: ...cumplir con las normas de electricidad locales y nacionales Backplane Waarschuwing Een gevaarlijke spanning of energie is aanwezig op de backplane wanneer het systeem in gebruik is Voorzichtigheid is...

Page 111: ...ale elektriciteitsvoorschriften Warnung Die Entsorgung dieses Produkts sollte gem allen Bestimmungen und Gesetzen des Landes erfolgen Warning Ultimate disposal of this product should be handled accord...

Page 112: ...Swap Fan Warning Warning The fans might still be turning when you remove the fan assembly from the chassis Keep fingers screwdrivers and other objects away from the openings in the fan assembly s hous...

Page 113: ...dos los destornilladores y todos los objetos lejos de las aberturas del ventilador Attention Il est possible que les ventilateurs soient toujours en rotation lorsque vous retirerez le bloc ventilateur...

Page 114: ...tadores de CA La utilizaci n de otros cables y adaptadores podr a ocasionar un mal funcionamiento o un incendio Aparatos El ctricos y la Ley de Seguridad del Material proh be el uso de UL o CSA cables...

Page 115: ...ode pour tous les autres appareils lectriques que les produits d sign s par Supermicro seulement AC Electrical Appliance and Material Safety Law UL CSA UL CSA Waarschuwing Bij het installeren van het...

Page 116: ...nds off control to a computer system at bootup C 2 How to Recover the UEFI BIOS Image the Main BIOS Block A UEFI BIOS flash chip consists of a recovery BIOS block and a main BIOS block a main BIOS ima...

Page 117: ...ebsite at www supermicro com to download the BIOS image into a USB flash device and rename it Super ROM for BIOS recovery use 2 Insert the USB device that contains the new BIOS image Super ROM into yo...

Page 118: ...you want to start with BIOS recovery If you decide to proceed with BIOS recovery follow the procedures below 5 When the screen as shown above displays using the arrow key select the item Proceed with...

Page 119: ...pt Note Do not interrupt this process until BIOS flashing is completed 9 After seeing the message that BIOS update is completed unplug the AC power cable from the power supply to clear the CMOS and th...

Page 120: ...s 3 0 x8 per node One MicroLP expansion module per node Motherboard X11SSD F proprietary form factor Dimensions 4 75 L x 16 W 121 mm x 406 mm Chassis SC938BH R1K68B 3U rackmount Dimensions WxHxD 17 3...

Page 121: ...N 61000 4 5 EN 61000 4 6 EN 61000 4 8 EN 61000 4 11 Safety CSA EN IEC UL 60950 1 Compliant UL or CSA Listed USA and Canada CE Marking Europe Perchlorate Warning California Best Management Practices Re...

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