Supermicro SuperServer 5039MA16-H12RFT User Manual Download Page 4

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SuperServer 5039MA8/16-H12RFT User's Manual

Contents

Power Button/LED .............................................................................................................10
Front Features ...................................................................................................................11
Rear Features ...................................................................................................................13

1.5 Motherboard Layout ...........................................................................................................14

Quick Reference Table ......................................................................................................15

Chapter 2 Installation in a Rack

2.1 Overview .............................................................................................................................17
2.2 Preparing for Setup ............................................................................................................17

Ambient Operating Temperature ....................................................................................18

Airflow

............................................................................................................................18

Mechanical Loading .......................................................................................................18
Circuit Overloading ........................................................................................................19
Reliable Ground .............................................................................................................19

2.3 Installing the Rails ..............................................................................................................20
2.4 Installing the Server ............................................................................................................21

Chapter 3 Maintenance and Component Installation

3.1 Removing Power ................................................................................................................23

System Power ...................................................................................................................23
Node Power ......................................................................................................................23

3.2 Accessing the System ........................................................................................................24

Top Cover ..........................................................................................................................24
Removing and Installing Motherboard Nodes ...................................................................25
Connecting to a Node .......................................................................................................26

3.3 Motherboard Components ..................................................................................................27

Summary of Contents for SuperServer 5039MA16-H12RFT

Page 1: ...USER S MANUAL Revision 1 0 SuperServer 5039MA8 H12RFT 5039MA16 H12RFT...

Page 2: ...pment is operated in a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instruction manua...

Page 3: ...user s manual for your server Supermicro product manuals http www supermicro com support manuals Product drivers and utilities https www supermicro com wftp driver Product safety info http www superm...

Page 4: ...paring for Setup 17 Choosing a Setup Location 17 Rack Precautions 17 System Precautions 18 Rack Mounting Considerations 18 Ambient Operating Temperature 18 Airflow 18 Mechanical Loading 18 Circuit Ove...

Page 5: ...Chapter 4 Motherboard Connections 4 1 Node Front Panel Controls 36 4 2 Headers and Connectors 36 4 3 Ports 38 I O Ports 38 4 4 Jumpers 40 4 5 LED Indicators 42 Chapter 5 Software 5 1 Microsoft Windows...

Page 6: ...6 SuperServer 5039MA8 16 H12RFT User s Manual Appendix A BIOS Codes Appendix B Standardized Warning Statements for AC Systems Appendix C System Specifications Appendix D UEFI BIOS Recovery...

Page 7: ...V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Technical Support rma supermi...

Page 8: ...Air Shroud MCP 310 93903 0N 12 Motherboard Tray MCP 220 93917 0N 12 HDD Backplane BPN SAS 939HS 1 Rail Kit MCP 290 41803 0N 1 1 2 Unpacking the System Inspect the box that the SuperServer 5039MA8 16...

Page 9: ...m C3750F 3955F Socket Type FCBGA1310 Memory Up to 128GB of ECC VLP RDIMM and 64GB of ECC VLP UDIMM DDR4 memory with speeds of up to 2400MHz Chipset Intel C3000 SoC System on a Chip Hard Drives Interna...

Page 10: ...ED The SC939HE R2K04BP is a twelve node chassis Each node has a main power button that also functions as a status LED See the table below for LED indications Node Power Button LED LED Appearance Node...

Page 11: ...Chassis Features Item Feature Description 1 Node A removable motherboard node that supports two 3 5 drives or four 2 5 drives SATA3 or NVMe 2 Power Supply 2000W power supply module with LED Two module...

Page 12: ...on 1 UID Button Unit identifier button and LED 2 Power Button Power button and LED 3 KVM Port Connect the adapter to this port to provide two USB2 ports and one serial port keyboard video mouse connec...

Page 13: ...The illustration below shows the features included on the rear of the chassis Rear Chassis Features Item Feature Description 1 Power Port Use to connect the power supply to a grounded AC power outlet...

Page 14: ...only JSD1 JPG1 JWD1 JVRM2 JVRM1 J2 JBT1 JTPM1 DIMMB2 DIMMB1 DIMMA2 DIMMA1 LED1 LED3 A C U15 JPME1 JBR1 JPTG1 BT1 1 J4 SW1 OSC1 1 JMD2 1 JMD1 LAN2 LAN1 I SATA2 SRW3 SRW2 SRW4 SRW1 A2SD1 3750F REV 1 01...

Page 15: ...Status LED1 Onboard Power LED Solid Green Power On LED2 BMC Heartbeat LED Blinking Green BMC Normal LED3 UID LED Solid Blue Unit Identified Connector Description BT1 Onboard Battery I SATA2 I SATA3 SA...

Page 16: ...ader RTL8211FS VGA AST2400 PCIe3 0_x1 8 0Gb s COM1 2 Header SATA III 6Gb s SATA III DOM USB2 0 2400 2133 1866 1600MHz U RDIMM U RDIMM RGMII 10Gbase T USB 2 0 480Mb s X557 AT2 AOM BPN MC12S R1 01 1000B...

Page 17: ...hoosing a Setup Location The system should be situated in a clean dust free area that is well ventilated Avoid areas where heat electrical noise and electromagnetic fields are generated Leave at least...

Page 18: ...and to keep your system operating in case of a power failure Allow any drives and power supply modules to cool before touching them When not servicing always keep the front door of the rack and all co...

Page 19: ...the use of power strips etc To prevent bodily injury when mounting or servicing this unit in a rack you must take special precautions to ensure that the system remains stable The following guidelines...

Page 20: ...locations of the screws for the rails 3 In each rail set the two sections are screwed together to keep them immobile during shipping Release these screws just enough to allow the rail sections to slid...

Page 21: ...ch handle Note These handles need only be installed when mounting the system into a short rack When mounting into a deep rack they are unnecessary and regular screws should be used instead of thumbscr...

Page 22: ...SuperServer 5039MA8 16 H12RFT User s Manual 22 Figure 2 3 Installing the Server onto the Rails...

Page 23: ...ed from the system or node This step is required when removing or installing non hot swap components or when replacing a non redundant power supply System Power 1 Use the operating system to power dow...

Page 24: ...access to the inside of the chassis Removing the Top Cover 1 Remove power from the system as described in Section 3 1 2 Remove the screws securing the cover to the chassis 3 Lift the cover off the cha...

Page 25: ...lling a Node Release Tab Handle Removing Nodes from the System 1 Power down the individual node by pressing the node s power button 2 Press and hold down the release tab on the front of the node 3 Use...

Page 26: ...H12RFT User s Manual 26 Connecting to a Node USB and serial port capabilities can be added to any node through the KVM port on the front Plug in the adapter pictured below Figure 3 3 Adapter to Provid...

Page 27: ...e when installing or removing DIMM modules to prevent any possible damage Memory Population Guidelines For optimal memory performance follow the table below when populating memory Populate DIMM slots...

Page 28: ...in the following order DIMMA2 DIMMB2 then DIMMA1 DIMMB1 Use memory modules of the same type and speed for optimized performance 2 Push the release tabs outwards on both ends of the DIMM slot to unlock...

Page 29: ...ower is removed This memory is powered by a lithium battery residing on the motherboard Replacing the Battery Begin by removing power from the system as described in Section 3 1 and remove the cover a...

Page 30: ...ard drives in each node tray Installing Hard Drives 1 Power down the node and remove it from the chassis Refer to Section 3 2 2 Insert the hard drive with the printed circuit board side facing downwar...

Page 31: ...ion Note Enterprise level hard disk drives are recommended for use in Supermicro chassis and servers For information on recommended HDDs visit the Supermicro website at http www supermicro com product...

Page 32: ...tire system This may be changed to two fan zones by opening jumper JP37 on the HDD backplane The figure below shows the two fan zone configuration Corresponding Nodes and Fans Cooling Zone Node Fans Z...

Page 33: ...easily changed with no tools required and no need to remove any other parts inside the chassis Replacing a Fan 1 Push both release tabs on the failed fan 2 Remove the fan from the chassis The wiring...

Page 34: ...fan efficiency Installing the Air Shroud 1 Remove the node from the chassis onto a flat non conductive surface 2 If necessary move any cables that interfere with the air shroud placement 3 Place the a...

Page 35: ...100 120V or 180 240V An amber light will be illuminated on the power supply when the power is off An illuminated green light indicates that the power supply is operating Changing the Power Supply 1 Wi...

Page 36: ...off the LED indicator The UID Indicator provides easy identification of a system unit that may be in need of service Note UID can also be triggered using IPMI on the motherboard For more information...

Page 37: ...is located at JSD1 Connect appropriate cables here to provide power support for your Serial Link DOM devices DOM Power Pin Definitions Pin Definition 1 5V 2 Ground 3 Ground TPM Port 80 Header A Truste...

Page 38: ...Serial Bus 2 0 ports USB0 1 are supported using the adapter in the KVM port M 2 Slot M 2 is formerly known as Next Generation Form Factor NGFF The A2SD1 3750F 3955F has two M 2 PCI E 3 0 slots that su...

Page 39: ...on the back panel The UID LED LED3 is located next to the UID button When you press the UID button the UID LED will be turned on Press the UID button again to turn off the LED indicator The UID Indica...

Page 40: ...oved Connector Pins Jumper Setting 3 2 1 3 2 1 CMOS Clear JBT1 is used to clear CMOS which will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally cl...

Page 41: ...vailable via Recovery mode Refer to the table below for jumper settings ME Recovery Mode Jumper Settings Jumper Setting Definition Pins 1 2 Normal Pins 2 3 ME Recovery Watch Dog JWD1 controls the Watc...

Page 42: ...w for jumper settings BIOS Recovery Jumper Settings Jumper Setting Definition Pins 1 2 Normal Pins 2 3 BIOS Recovery 10G Ethernet Enable Use JPTG1 to enable or disable 10G Ethernet support for the LAN...

Page 43: ...e system and unplug the power cord before removing or installing components Onboard Power LED Indicator LED Color Definition Off System Off power cable not connected Green System On BMC Heartbeat LED...

Page 44: ...site at www supermicro com support manuals Installing the OS 1 Create a method to access the MS Windows installation ISO file That might be a DVD perhaps using an external USB SATA DVD drive or a USB...

Page 45: ...iver browse the USB flash drive for the proper driver files For RAID choose the SATA sSATA RAID driver indicated then choose the storage drive on which you want to install it For non RAID choose the S...

Page 46: ...if preferred Another option is to go to the Supermicro website at http www supermicro com products Find the product page for your motherboard and Download the Latest Drivers and Utilities Insert the f...

Page 47: ...Protocol SNMP SuperDoctor 5 comes in local and remote management versions and can be used with Nagios to maximize your system monitoring needs With SuperDoctor 5 Management Server SSM Server you can r...

Page 48: ...Intelligent Platform Management Interface IPMI IPMI is used to provide remote access monitoring and management There are several BIOS settings that are related to IPMI For general documentation and in...

Page 49: ...F1 F2 etc Each main BIOS menu option is described in this manual The Main BIOS screen has two main frames The left frame displays all the options that can be configured Grayed out options cannot be co...

Page 50: ...and time Highlight System Date or System Time using the arrow keys Enter new values using the keyboard Press the Tab key or the arrow keys to move between fields The date must be entered in MM DD YYY...

Page 51: ...4 BIOS 51 Memory Information Total Memory This item displays the total size of memory available in the system Memory Speed This item displays the default speed of the memory modules installed in the...

Page 52: ...feature to select the screen display between POST messages or the OEM logo at bootup Select Disabled to display the POST messages Select Enabled to display the OEM logo instead of the normal POST mess...

Page 53: ...tem from a Legacy boot device after its initial boot failure The options are Disabled and Legacy Boot Power Configuration Watch Dog Function If enabled the Watch Dog timer will allow the system to reb...

Page 54: ...M1 Select Enable to activate TM1 support for system thermal monitoring TM1 allows the CPU to regulate its power consumption based upon the modulation of the CPU Internal clock when the CPU temperature...

Page 55: ...mprove CPU performance The options are Enable and Disable ACPI 3 0 T States Available when CPU C States is set to Enabled Select Enable to support ACPI Advanced Configuration and Power Interface 3 0 T...

Page 56: ...ity The options are Disable and Enable Lock PACKAGE_RAPL_LIMIT Use this feature to unlock the MSR 0x610 The options are Disable and Enable PL1 Time Window Use this feature to define the Running Averag...

Page 57: ...The options are Disabled and Enabled NonVolatile Memory Setup Method Use this feature to select how data will be saved after power loss The options are Dis abled and NVDIMM If the feature above is set...

Page 58: ...hen this feature is set to Enabled it sends a notification when ME initiates a global reset The options are Disabled and Enabled PMC WDT When this feature is Enabled it sends a notification when the P...

Page 59: ...able or disable fast path through the memory reference code The options are Disabled and Enabled Command Address Parity Use this feature to enable or disable the DDR4 command address parity The option...

Page 60: ...ctable error the error is corrected and sent to the requestor the original source Memory is corrected as well Select Enable to use Demand Scrubbing for ECC memory correction The options are Enabled an...

Page 61: ...for EFI applications only The options are Enabled Disabled and Auto XHCI Hand Off This is a work around solution for operating systems that do not support XHCI Extensible Host Controller Interface han...

Page 62: ...link in a low power mode during extended periods of I O inactivity and will return the link to an active state when I O activity resumes The options are Enabled and Disabled SATA 0 SGPIO LED Use this...

Page 63: ...ATA 1 SGPIO LED Use this feature to select the SATA LED or SGPIO LED The options are SGPIO and SATA LED I SATA2 I SATA8 This following information is displayed for each SATA drive entry Device Informa...

Page 64: ...ualization support SR IOV is an extension of the PCI Express interface and consists of two functions physical functions PF and virtual functions VF PF is the primary function and is used to control an...

Page 65: ...on card for this slot The options are Disabled Legacy and EFI Onboard LAN OPROM Type Use this feature to select the Onboard LAN Option ROM type The options are Disabled Legacy and EFI Onboard Video O...

Page 66: ...is item is hidden when Serial Port 1 is set to Disabled Serial Port 1 Change Settings This feature specifies the base I O port address and the Interrupt Request address of Serial Port 1 Select Auto fo...

Page 67: ...bits to detect data transmission errors Select Even if the parity bit is set to 0 and the number of 1 s in data bits is even Select Odd if the parity bit is set to 0 and the number of 1 s in data bits...

Page 68: ...e this feature to specify how the host computer will exchange data with the client computer which is the remote computer used by the user SOL Terminal Type Use this feature to select the target termin...

Page 69: ...to prevent data loss caused by buffer overflow Send a Stop signal to stop sending data when the receiving buffer is full Send a Start signal to start sending data when the receiving buffer is empty T...

Page 70: ...lect Enabled to use a COM port selected by the user for EMS Console Redirection The options are Disabled and Enabled If the feature above is set to Enabled the following features are available for con...

Page 71: ...Even if the parity bit is set to 0 and the number of 1 s in data bits is even Select Odd if the parity bit is set to 0 and the number of 1 s in data bits is odd Select None if you do not want to send...

Page 72: ...6 PCR Bank and additional settings will become available for configuration SHA 1 PCR Bank Use this feature to disable or enable the SHA 1 Platform Configuration Register PCR bank for the installed TPM...

Page 73: ...PM 2 0 devices Select Auto to enable support for both versions The options are TPM 1 2 TPM 2 0 and Auto iSCSI Configuration iSCSI Initiator Name This feature allows the user to enter the unique name o...

Page 74: ...ecify the duration for LEDs to blink The range is from 0 15 seconds The default setting is 0 Port Configuration Information This section displays the following port information UEFI Driver Adapter PBA...

Page 75: ...ature to enable or disable PCIe error logging suport The options are Disabled and Enabled Memory ELog Support Use this feature to enable or disable memory error logging suport The options are Disabled...

Page 76: ...y SMBIOS Event Log Standard Settings Log System Boot Event Select Enabled to log system boot events The options are Enabled and Disabled MECI Multiple Event Count Increment Enter the increment value f...

Page 77: ...your system System Event Log Enabling Disabling Options SEL Components Select Enabled for all system event logging at bootup The options are Disabled and Enabled Erasing Settings Erase SEL Select Yes...

Page 78: ...nd Yes If the item above is set to Yes Configuration Address Source and VLAN available for configuration Configuration Address Source Use this feature to select the source of the IP address for this c...

Page 79: ...the IPMI VLAN function The options are Disable and Enable IPMI Function Support Use this feature to enable IPMI support The options are Disabled and Enabled When disabled the system powers on quicker...

Page 80: ...The options are Setup and Always Administrator Password Use this feature to set the administrator password which is required to enter the BIOS setup utility The length of the password should be from...

Page 81: ...led Restore Factory Keys Select Yes to install the default settings for all keys The options are Yes and No Enroll Efi Image This feature allows the image to run in Secure Boot mode Save All Secure Bo...

Page 82: ...DBX from the manufacturer s defaults to the existing DBX Select No to load the DBX from a file The options are Yes and No Authorized TimeStamps Set New Select Yes to load the DBT from the manufacturer...

Page 83: ...GACY UEFI and DUAL Fixed Boot Order Priorities This option prioritizes the order of bootable devices that the system to boot from Press Enter on each entry from top to bottom to select devices UEFI Bo...

Page 84: ...d devices The options are the list of detected boot device s and Disabled UEFI NETWORK Drive BBS Priorities Boot Option This feature sets the system boot order of detected devices The options are the...

Page 85: ...ges and Exit Select this feature to quit the BIOS Setup without making any permanent changes to the system configuration and reboot the computer Select Discard Changes and Exit from the Exit menu and...

Page 86: ...the Exit menu and press Enter This enables the user to save any changes to the BIOS setup for future use Restore User Defaults To set this feature select Restore User Defaults from the Exit menu and p...

Page 87: ...he boot up procedure If a fatal error occurs you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible beeps The tab...

Page 88: ...ermicro com support manuals AMI BIOS POST Codes User s Guide When BIOS performs the Power On Self Test it writes checkpoint codes to I O port 0080h If the computer cannot complete the boot process a d...

Page 89: ...nt for assistance Only certified technicians should attempt to install or configure components Read this appendix in its entirety before installing or configuring components in the Supermicro chassis...

Page 90: ...o considere los riesgos de la corriente el ctrica y familiar cese con los procedimientos est ndar de prevenci n de accidentes Al final de cada advertencia encontrar el n mero que le ayudar a encontrar...

Page 91: ...erken dient u zich bewust te zijn van de bij een elektrische installatie betrokken risico s en dient u op de hoogte te zijn van de standaard procedures om ongelukken te voorkomen Gebruik de nummers aa...

Page 92: ...mentaci n Attention Avant de brancher le syst me sur la source d alimentation consulter les directives d installation Circuit Breaker Waarschuwing Raadpleeg de installatie instructies voordat u het sy...

Page 93: ...entes del edificio Aseg rese de que el dispositivo de protecci n no sea superior a 250 V 20 A Attention Pour ce qui est de la protection contre les courts circuits surtension ce produit d pend de l in...

Page 94: ...e energ a y del cable el ctrico quitado de los m dulos de fuente de alimentaci n antes de tener acceso el interior del chasis para instalar o para quitar componentes de sistema Attention Le syst me do...

Page 95: ...mkabels aangesloten op de voeding en van de behuizing te verwijderen Equipment Installation Warning Only trained and qualified personnel should be allowed to install replace or service this equipment...

Page 96: ...tention Il est vivement recommand de confier l installation le remplacement et la maintenance de ces quipements des personnels qualifi s et exp riment s Warning This unit is intended for installation...

Page 97: ...so a una de estas reas mediante la utilizaci n de una herramienta especial cerradura con llave u otro medio de seguridad Attention Cet appareil doit tre install e dans des zones d acc s r serv s L acc...

Page 98: ...mblable ou quivalent recommand e par le fabricant Jeter les piles usag es conform ment aux instructions du fabricant Advertencia Existe peligro de explosi n si la bater a se reemplaza de manera incorr...

Page 99: ...nt aanbevolen wordt Gebruikte batterijen dienen overeenkomstig fabrieksvoorschriften afgevoerd te worden Redundant Power Supplies Warning This unit might have more than one power supply connection All...

Page 100: ...omloos te maken Advertencia Puede que esta unidad tenga m s de una conexi n para fuentes de alimentaci n Para cortar por completo el suministro de energ a deben desconectarse todas las conexiones Atte...

Page 101: ...g Advertencia Cuando el sistema est en funcionamiento el voltaje del plano trasero es peligroso Tenga cuidado cuando lo revise Attention Lorsque le syst me est en fonctionnement des tensions lectrique...

Page 102: ...cumplir con las normas de electricidad locales y nacionales Backplane Waarschuwing Een gevaarlijke spanning of energie is aanwezig op de backplane wanneer het systeem in gebruik is Voorzichtigheid is...

Page 103: ...ionale elektriciteitsvoorschriften Warnung Die Entsorgung dieses Produkts sollte gem allen Bestimmungen und Gesetzen des Landes erfolgen Warning Ultimate disposal of this product should be handled acc...

Page 104: ...recyclage de ce produit sont g n ralement soumis des lois et ou directives de respect de l environnement Renseignez vous aupr s de l organisme comp tent Hot Swap Fan Warning Warning Hazardous moving...

Page 105: ...s destornilladores y todos los objetos lejos de las aberturas del ventilador Attention Pieces mobiles dangereuses Se tenir a l ecart des lames du ventilateur Il est possible que les ventilateurs soien...

Page 106: ...UL oder CAS zertifizierten Kabeln mit UL CSA gekennzeichnet an Ger ten oder Produkten die nicht mit Supermicro gekennzeichnet sind AC AC UL CSA UL CSE Supermicro Supermicro UL CSA UL CSA Supermicro U...

Page 107: ...sur le code pour tous les autres appareils lectriques sauf les produits d sign s par Supermicro seulement AC AC UL CSA UL CSA Supermicro UL CSA UL CSA Supermicro Advertencia Cuando instale el producto...

Page 108: ...Aansluitmethode deze moet altijd voldoen aan de lokale voorschriften en veiligheidsnormen inclusief de juiste kabeldikte en stekker Het gebruik van niet geschikte Kabels en of Adapters kan een storin...

Page 109: ...2SD1 3750 F 3955F proprietary form factor Dimensions 4 6 x 11 70 11 68 x 29 72 cm Chassis SC939HE R2K04BP 3U rackmount Dimensions WxHxD 17 5 x 5 21 x 29 5 in 444 5 x 132 x 749 3 mm Weight Net 132 lbs...

Page 110: ...0 4 11 Safety CSA EN IEC UL 60950 1 Compliant UL or CSA Listed USA and Canada CE Marking Europe Other VCCI CISPR 32 and AS NZS CISPR 32 Environmental Directive 2011 65 EU and Directive 2012 19 EU Perc...

Page 111: ...he recovery block contains critical BIOS codes including memory detection and recovery codes for the user to flash a healthy BIOS image if the original main BIOS image is corrupted When the system pow...

Page 112: ...ing a different machine copy the Super ROM binary image file into the Root directory of a USB device or a writable CD DVD Note 1 If you cannot locate the Super ROM file in your drive disk visit our we...

Page 113: ...you want to start the BIOS recovery If you decide to proceed with BIOS recovery follow the procedures below 4 When the screen as shown above displays use the arrow keys to select the item Proceed with...

Page 114: ...m boot to enter the BIOS Setup utility From the top of the tool bar select Boot to enter the submenu From the submenu list select Boot Option 1 as shown below Then set Boot Option 1 to UEFI AP UEFI Bu...

Page 115: ...rupt this process until the BIOS flashing is complete 9 The screen above indicates that the BIOS update process is complete When you see the screen above unplug the AC power cable from the power suppl...

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