Supermicro SUPERSERVER 1025C-UR User Manual Download Page 60

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UPER

ERVER 1025C-UR User's Manual

Note: SD III Software Revision 1.0 can be downloaded from our Web Site at: ftp://

ftp.supermicro.com/utility/Supero_Doctor_III/. You can also download SDIII User's

Guide at: http://www.supermicro.com/PRODUCT/Manuals/SDIII/UserGuide.pdf. For

Linux, we will still recommend Supero Doctor II.

Supero Doctor III Interface Display Screen (Remote Control)

Summary of Contents for SUPERSERVER 1025C-UR

Page 1: ...SUPERSERVER 1025C UR SUPER USER S MANUAL 1 0...

Page 2: ...laws of Santa Clara County in the State of California USA The State of California County of Santa Clara shall be the exclusive venue for the resolution of any such disputes Super Micro s total liabil...

Page 3: ...on This chapter describes the steps necessary to install the SuperServer 1025C UR into a rack and check out the server con guration prior to powering up the system If your server was ordered without p...

Page 4: ...r 6 Advanced Chassis Setup Refer to Chapter 6 for detailed information on the 1U SC113TQ R650 rackmount server chassis You should follow the procedures given in this chapter when install ing removing...

Page 5: ...v Preface Notes...

Page 6: ...rver Installation 2 1 Overview 2 1 2 2 Unpacking the System 2 1 2 3 Preparing for Setup 2 1 Choosing a Setup Location 2 1 Rack Precautions 2 2 Server Precautions 2 2 Rack Mounting Considerations 2 3 A...

Page 7: ...Operating Precautions 4 4 Chapter 5 Advanced Serverboard Setup 5 1 Handling the Serverboard 5 1 Precautions 5 1 Unpacking 5 1 5 2 Processor and Heatsink Installation 5 2 5 3 Connecting Cables 5 5 Conn...

Page 8: ...4 Drive Bay Installation Removal 6 4 Accessing the Drive Bays 6 4 Hard Drive Installation 6 4 DVD Drive Installation 6 6 6 5 Power Supply 6 8 Power Supply Failure 6 8 Chapter 7 BIOS 7 1 Introduction...

Page 9: ...r use with the 1025C UR www supermicro com In addition to the mainboard and chassis various hardware components may have been included with your 1025C UR as listed below Two 2 CPU heatsinks SNK P0017...

Page 10: ...e X7DCU is a specially designed serverboard that features Supermicro s UIO Universal I O technology UIO serverboards have a PCI Express x8 connector that can support any one of several types of UIO ca...

Page 11: ...otection and BIOS rescue Figure 1 1 Intel 5100 ICH9R Chipset System Block Diagram Note This is a general block diagram Please see Chapter 5 for details USB 2 0 3 0 Gb S Ports Ports Port 0 MCH Processo...

Page 12: ...activity hard disk drive activity and a UID Universal Information LED Also present are a main power button a system reset button and a UID button I O Backplane The SC113TQ R650 is a 1U rackmount chas...

Page 13: ...uper Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Technica...

Page 14: ...SUPERSERVER 1025C UR Manual 1 6 Notes...

Page 15: ...n a suitable location for the rack unit that will hold the SuperServer 1025C UR It should be situated in a clean dust free area that is well ventilated Avoid areas where heat electrical noise and elec...

Page 16: ...e the rack is stable before extending a component from the rack You should extend only one component at a time extending two or more si multaneously may cause the rack to become unstable Server Precau...

Page 17: ...mised Mechanical Loading Equipment should be mounted into a rack so that a hazardous condition does not arise due to uneven mechanical loading Circuit Overloading Consideration should be given to the...

Page 18: ...the assembly procedure will differ slightly The following is a guideline for installing the 1025C UR into a rack with the rack rails provided You should also refer to the installation instructions tha...

Page 19: ...a server rack Attach the inner rail extension to stabilize the chassis within the rack Installing the Inner Rails Figure 2 2 Place the inner rack extensions on the side of the chassis aligning the ho...

Page 20: ...rection Adjust both the short and long brackets to the proper distance so that the rail ts snugly into the rack Secure the long bracket to the front side of the outer rail with two M5 screws and the s...

Page 21: ...Chapter 2 Server Installation 2 7 Figure 2 4 Installing the Outer Rails to the Rack 2 3 3...

Page 22: ...ls are installed on the rack Line chassis rails with the front of the rack rails Slide the chassis rails into the rack rails keeping the pressure even on both sides you may have to depress the locking...

Page 23: ...ut the front of the rack Larger chassis should be positioned to balance the weight between front and back If a bezel is included on your server remove it Then attach the two front brackets to each sid...

Page 24: ...handles on either side and pull the unit straight out until it locks you will hear a click Remove the screws securing the top cover to the chssis Slide the cover toward the rear of the chassis Lift th...

Page 25: ...stalled and all connections have been made Checking the Drives For servicing the hard drives you will need to remove the top chassis cover If you need to remove or install hard drives please refer to...

Page 26: ...2 12 SUPERSERVER 1025C UR Manual Notes...

Page 27: ...utton to reboot the system Power This is the main power button which is used to apply or turn off the main system power Turning off system power with this button removes the main power but keeps stand...

Page 28: ...and when blinking red slowly a power failure This LED will be blue when used for UID Unit Identi er When on continuously it indicates an overheat condition which may be caused by cables obstructing th...

Page 29: ...on LAN2 when ashing NIC1 Indicates network activity on LAN1 when ashing HDD Indicates IDE channel activity when ashing Power Indicates power is being supplied to the system s power supply units This L...

Page 30: ...ty A connection to the SATA backplane enables this LED to blink on and off when that particular drive is being accessed Red The red LED indicates two states When blinking it indicates the drive is reb...

Page 31: ...ower you should rst power down the system with the operating system rst and then unplug the power cords of all the power supply units in the system When working around exposed electrical circuits anot...

Page 32: ...which are excellent metal conductors that can create short circuits and harm you if they come into contact with printed circuit boards or areas where power is present Serverboard Battery CAUTION There...

Page 33: ...l ready for use Touch a grounded metal object before removing the board from the antistatic bag Do not let components or PCBs come into contact with your clothing which may retain a charge even if you...

Page 34: ...that the chassis cover is in place when the 1025C UR is operating to assure proper cooling Out of warranty damage to the system can occur if this practice is not strictly followed Figure 4 1 Installin...

Page 35: ...t the size and weight of the serverboard can cause it to bend if handled improperly which may result in damage To prevent the serverboard from bending keep one hand under the center of the board to su...

Page 36: ...or when receiving a serverboard with a CPU pre installed make sure that the CPU plastic cap is in place and none of the CPU pins are bent otherwise contact the retailer immediately 5 2 Processor and...

Page 37: ...or vertically and do not rub the CPU against any surface or any of the contacts which may damage the CPU and or contacts 7 With the CPU in the socket inspect the four corners of the CPU to make sure...

Page 38: ...Screw in two diagonal screws i e the 1 and the 2 screws until just snug Do not fully tighten the screws or you may damage the CPU 4 Add the two remaining screws then nish the installation by fully ti...

Page 39: ...s noted should be connected See the serverboard layout diagram in this chapter for connector locations DVD ROM Drive cable IDE Control Panel cable JF1 see next page SAS cables two are preconnected to...

Page 40: ...EDs in the chassis See the Connector De nitions section in this chapter for details and pin descrip tions of JF1 NMI x key Vcc UID Switch Vcc Vcc Vcc Vcc Vcc Reset Power Ground x key Power LED HDD LED...

Page 41: ...odule incor rectly see Figure 5 5 Gently press down on the DIMM module until it snaps into place in the slot Repeat for all modules see step 1 above Install DIMMs in the following order DIMM1A and DIM...

Page 42: ...nt on the slot Notch Notch Release Tab Release Tab Possible System Memory Allocation Availability System Device Size Physical Memory Remaining 4 GB Total System Memory Firmware Hub ash memory System B...

Page 43: ...con guration list below Installing a PCI Expansion Card Choose the correct riser card in which to place the add on card Open the PCI slot shield lever of the corresponding slot and slide the shield si...

Page 44: ...JWF1 I SATA0 CPU2 CPU1 SXB2 PCI E X8 UIOP BANK3 JWOL SGPIO2SGPIO1 COM2 CPU FAN1 KB MS SMBUS_PS COM1 USB0 1 BANK2 LAN1 VGA BANK1 DIMM2C DIMM1B DIMM2A DIMM2B DIMM1A LAN2 CPU FAN2 Compact Flash IDE Flopp...

Page 45: ...or I SATA0 I SATA5 SATA Ports JD1 Onboard Speaker Power LED JF1 Control Panel Connector JK1 Keylock Header JL1 Chassis Intrusion Header JOH1 Overheat Warning Header JPW1 20 Pin ATX Power Connector JPW...

Page 46: ...r connector above the Auxiliary 4 pin connector at JPW2 must also be con nected to your power supply See the table on the right for pin de nitions NMI Button Pin De nitions JF1 Pin De nition 19 Contro...

Page 47: ...on pins 13 and 14 of JF1 Attach the IDE hard drive LED cable to display disk activity Refer to the table on the right for pin de nitions HDD LED Pin De nitions JF1 Pin De nition 13 Vcc 14 HD Active Un...

Page 48: ...ton for at least 4 seconds Refer to the table on the right for pin de nitions Universal Serial Bus Ports Two Universal Serial Bus ports are located on the I O backplane USB0 is the bottom connector an...

Page 49: ...s COM1 COM2 Pin De nition Pin De nition 1 DCD 6 DSR 2 RXD 7 RTS 3 TXD 8 CTS 4 DTR 9 RI 5 Ground 10 NC Fan Header Pin De nitions FAN1 8 Pin De nition 1 Ground Black 2 12V Red 3 Tachometer 4 PWM Control...

Page 50: ...NC Speaker Connector Pin De nitions JD1 Pin Function De nition 4 Speaker data red wire 5 Key No connection 6 Key 7 Speaker data Overheat LED Connect an LED to the JOH1 header to provide warning of a...

Page 51: ...e On Ring Pin De nitions JWOR Pin De nition 1 Ground Black 2 Wake up Wake On LAN Pin De nitions JWOL1 Pin De nition 1 5V Standby 2 Ground 3 Wake up SMBUS_PS This header is for I2 C which may be used t...

Page 52: ...connects to pin 13 of JF1 The Rear UID Switch SW1 is located next to LAN2 Push ing the UID switch on the Front Control Panel will illuminate both the Rear UID and the Control Panel UID indicators Pus...

Page 53: ...clear CMOS and will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally clearing the contents of CMOS To clear CMOS First power down the system and u...

Page 54: ...r LAN Enable Disable Jumper Settings JPL1 Jumper Setting De nition Pins 1 2 Enabled Pins 2 3 Disabled Watch Dog Jumper Settings JWD Jumper Setting De nition Pins 1 2 Reset Pins 2 3 NMI Open Disabled C...

Page 55: ...100 MHz Amber 1 GHz LE19 The LE1 LED located near JF1 is the power LED LE19 illuminates when the serverboard is powered up Be sure to remove the poower cable when install ing or removing any component...

Page 56: ...A and the connector that does not have twisted wires always connects to drive B Floppy Connector The oppy connector is designated Floppy See the table below for pin de nitions Floppy Drive Connector...

Page 57: ...st Data 11 11 Host Data 3 12 Host Data 12 13 Host Data 2 14 Host Data 13 15 Host Data 1 16 Host Data 14 17 Host Data 0 18 Host Data 15 19 Ground 20 Key 21 DRQ3 22 Ground 23 I O Write 24 Ground 25 I O...

Page 58: ...d with your motherboard Driver Tool Installation Display Screen Note Click the icons showing a hand writing on paper to view the readme les for each item Click the computer icons to the right of these...

Page 59: ...ucial system information such as CPU temperature system voltages and fan status See the Figure below for a display of the Supero Doctor III interface Note The default User Name and Password for SuperD...

Page 60: ...aded from our Web Site at ftp ftp supermicro com utility Supero_Doctor_III You can also download SDIII User s Guide at http www supermicro com PRODUCT Manuals SDIII UserGuide pdf For Linux we will sti...

Page 61: ...vent damage to any printed circuit boards PCBs it is important to handle them very carefully The following measures are generally suf cient to protect your equipment from ESD damage Precautions Use a...

Page 62: ...and the control panel buttons Details on JF1 can be found in Chapter 5 Advanced Serverboard Installation 6 3 System Cooling Four 4 cm heavy duty counter rotating fans provide the cooling for the syst...

Page 63: ...model the system can continue to run with a failed fan The SC113 chassis includes four pre installed fans Two additional open slots are available so that up to two more fans may be added Replacing a S...

Page 64: ...the DVD ROM Drive Installation section later in this chapter for instructions Note Only a slim DVD ROM drive will t into the 1025C UR Hard Drive Installation The hard drives are mounted in drive carri...

Page 65: ...hen the carrier reaches the rear of the bay the release handle will retract Push the handle in until it clicks into its locked position Removing a Hard Drive Figure 6 4 To remove a carrier push the re...

Page 66: ...ve the chassis cover Unplug the drives power and data cables from the serverboard and or back plane If you are adding a new drive Remove the mini bezel grate from the drive bay The bezel can be remove...

Page 67: ...in the slot until the tab locks in place Reconnect the data and power cables Replace the chassis cover replace the server in the rack if necessary and power up the system 5 6 7 Figure 6 5 Installing t...

Page 68: ...versal Information LED on the control panel will blink slowly and remain so until the failed module has been replaced Replacement modules can be ordered directly from Supermicro see contact informatio...

Page 69: ...backup battery pro vides power to the CMOS Logic enabling it to retain system parameters Each time the computer is powered on the computer is con gured with the values stored in the CMOS Logic by the...

Page 70: ...pressing Delete immediately after turning the system on or When the message shown below appears brie y at the bottom of the screen during the POST Power On Self Test press the Delete key to activate t...

Page 71: ...ate Using the arrow keys highlight the month day and year elds and enter the correct data Press the Enter key to save the data BIOS Date This eld displays the date when this version of BIOS was built...

Page 72: ...the BIOS to automatically con gure the parameters of the HDD installed at the connection Enter a number between 1 to 39 to select a predetermined HDD type Select User to allow the user to enter the p...

Page 73: ...re Parallel ATA Serial ATA Both and Auto SATA Controller Mode Select Compatible to allow the SATA and PATA drives to be automatically detected and be placed in the Legacy Mode by the BIOS Select Enhan...

Page 74: ...accessed by highlighting the item and pressing Enter Boot Features Access the submenu to make changes to the following settings QuickBoot Mode If enabled this feature will speed up the POST Power On...

Page 75: ...an incoming call is received by your modem The options are On and Off Power Loss Control This setting allows you to choose how the system will react when power returns after an unexpected loss of powe...

Page 76: ...lect Uncached to disable this function Select Write Through to allow data to be cached into the buffer and written into the system memory at the same time Select Write Protect to prevent data from bei...

Page 77: ...Registers are con gured as distinct separate units and cannot be overlapped If enabled the user can achieve better graphic effects when using a Linux graphic driver that requires the write combining...

Page 78: ...the system become unstable When this occurs reset the setting to the default setting Clock Spectrum Feature If Enabled the BIOS will monitor the level of Electromagnetic Interference caused by the co...

Page 79: ...or ECC memory correction Patrol Scrubbing Scrubbing is a process that allows the North Bridge to correct correctable memoryer rors detected on a memory module and send the correction to the requestor...

Page 80: ...2 TM2 which will lower CPU voltage and frequency when the CPU temperature reaches a prede ned overheat thresh old Set to Disabled to use Thermal Manager 1 TM1 allowing CPU clocking to be regulated via...

Page 81: ...e to this setting you will need to power off and restart the system for the change to take effect Please refer to Intel s web site for detailed information Intel EIST Support Available if supported by...

Page 82: ...t request for serial port A The options are IRQ3 and IRQ4 Serial Port B This setting allows you to assign control of serial port B The options are Enabled user de ned Disabled Auto BIOS controlled and...

Page 83: ...ing This setting allows you to Enable or Disable event logging ECC Event Logging This setting allows you to Enable or Disable ECC event logging Mark DMI Events as Read Highlight this item and press En...

Page 84: ...ill automatically display the status of the fans indicated in this item Fan Speed Control Modes This feature allows the user to decide how the system controls the speeds of the onboard fans The CPU te...

Page 85: ...ke prece dence over the BIOS settings When rst installed Supero Doctor III adopts the temperature threshold settings previously set in the BIOS Any subsequent changes to these thresholds must be made...

Page 86: ...ogging When this function is set to Disabled the system will continue to log events received via system interface The options are Enabled and Disabled Clear System Event Logging Enabling this function...

Page 87: ...nutes This feature allows the user to set the time value in minutes for the previous item OS Boot Watch Dog by keying in a desired number in the blank The default set ting is 10 minutes Please ignore...

Page 88: ...an speeds and voltages of various components 7 5 Security Choose Security from the Phoenix BIOS Setup Utility main menu with the arrow keys You should see the following display Security setting option...

Page 89: ...has not been used and Set means a user password has been entered for the system Set Supervisor Password When the item Set Supervisor Password is highlighted hit the Enter key When prompted type the Su...

Page 90: ...section above are bootable devices listed in the sequence of boot order as speci ed The boot functions for the devices included in the candidate list above are currently disabled Use a key or a key t...

Page 91: ...changes you made and to exit the BIOS Setup utility Exit Discarding Changes Highlight this item and hit Enter to exit the BIOS Setup utility without saving any changes you may have made Load Setup Def...

Page 92: ...7 24 SUPERSERVER 1025C UR User s Manual Save Changes Highlight this item and hit Enter to save any changes you made You will remain in the Setup utility...

Page 93: ...Keyboard controller failed test May require replacing keyboard controller Keyboard locked Unlock key switch Unlock the system to proceed Monitor type does not match CMOS Run SETUP Monitor type not co...

Page 94: ...used by incorrect values and they are not corrected the next boot will likely fail On systems with control of wait states improper Setup settings can also terminate POST and cause this error on the ne...

Page 95: ...akes too long device Address Con ict Address con ict for speci ed device Allocation Error for device Run ISA or EISA Con guration Utility to resolve resource con ict for the speci ed device CD ROM Dri...

Page 96: ...t found Operating system cannot be located on either drive A or drive C Enter Setup and see if xed disk and drive A are properly identi ed Parity Check 1 nnnn Parity error found in the system bus BIOS...

Page 97: ...devices have the Con guration Request bit set in the LCT Run an I2O Con guration Utility e g the SAC utility System BIOS shadowed System BIOS copied to shadow RAM UMB upper limit segment address nnnn...

Page 98: ...A 6 SUPERSERVER 1025C UR User s Manual Notes...

Page 99: ...the error to port 80h attempt to initialize video and write the error in the top left corner of the screen The following is a list of codes that may be written to port 80h POST Code Description 01h IP...

Page 100: ...spatch Manager 36h Warm start shut down 38h Shadow system BIOS ROM 3Ah Auto size cache 3Ch Advanced con guration of chipset registers 3Dh Load alternate registers with CMOS values 41h Initialize exten...

Page 101: ...81h Late POST device initialization 82h Detect and install external RS232 ports 83h Con gure non MCD IDE controllers 84h Detect and install external parallel ports 85h Initialize PC compatible PnP IS...

Page 102: ...l B6h Check password optional B7h Initialize ACPI BIOS and PPM Structures B9h Prepare Boot BAh Initialize SMBIOS BCh Clear parity checkers BDh Display MultiBoot menu BEh Clear screen optional BFh Chec...

Page 103: ...e interrupt vectors F1h Initialize Run Time Clock F2h Initialize video F3h Initialize System Management Manager F4h Output one beep F5h Clear Huge Segment F6h Boot to Mini DOS F7h Boot to Full DOS If...

Page 104: ...B 6 SUPERSERVER 1025C UR User s Manual Notes...

Page 105: ...Mb Phoenix Flash ROM Memory Capacity Six 240 pin DIMM sockets supporting up to 32 GB of registered ECC DDR2 667 533 SDRAM See the memory section in Chapter 5 for details SATA Controller Intel ICH9R o...

Page 106: ...Voltages 5V 25A 3 3V 12A 12V 54A 5Vsb 3A Operating Environment Operating Temperature 10 to 35 C 50 to 95 F Non operating Temperature 40 to 70 C 40 to 158 F Operating Relative Humidity 8 to 90 non con...

Page 107: ...aims any and all liability and should buyer use or sell such products for use in such ultra hazardous applications it does so entirely at its own risk Furthermore buyer agrees to fully indemnify defen...

Page 108: ...C 4 SUPERSERVER 1025C UR User s Manual Notes...

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