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correspond to gene symbols. However, if
the gene names correspond to Entrez IDs,
this parameter should be changed to
"ENTREZ". It should be noted that if two
expression data files are provided (one for
gene
expression
and
another
for
microRNAs), then both should contain the
same type of gene names
i.e.
IDs should not
be mixed.
ppiDataType = "SYMB"
By default, the gene names in the
interactome data file are assumed to be
gene symbols. If that is not the case, this
parameter should be set to "ENTREZ".
outputDataType = "SYMB"
By default, the output files save the hub
and interactors as gene symbols. However,
the user can choose to save the two as
Entrez IDs by setting this parameter to
"ENTREZ".
Species = "Human"
Currently only human is supported.
inputCores = 4
This denotes the number of microprocessor
cores that are available for executing the
code in parallel. The number is decreased
automatically if fewer than four cores are
available. However, if more than four cores
are available, then this number can be
increased explicitly.
We note that during the conversion of gene symbols to Entrez Ids, some error files may
be generated as described in the next section.
Summary of Contents for GLSY22522
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