Olympus IX70 Operation Manual Download Page 5

decoded by the sheet taped to the side of the scope. If you need filters not currently installed, please ask 
for assistance in swapping out the cubes (we have more choices than available turret positions). A manual 
shutter slide is also located on the side (Fig. 2 “manual shutter”). Push toward the wall to block 
fluorescence (but be aware this will prevent you from snapping a picture too!). There is a 1.5x tube lens 
that will enlarge the image destined for your eyes (see “mag changer” Fig 2). However, the image quality 
is poor and a bright reflection renders images in the camera port in need of post hoc corrections. Use the 
1-X (pushed in) position for all quality work. A brightfield lamp is available (above the scope) and is 
controlled via the square button on the front left-hand side of the scope base plus the voltage up/down 
slider (see Fig 1). 
 

 

DIC: 

 

The microscope is equipped with Differential Inference Contrast (DIC) optics to generate contrast 

in unstained materials. To setup DIC or use is in ocular mode, one needs to use the analyzer slider (must 
be inserted under the filter turret) and the optical path should be optimized (Kohler illumination, described 
below). The DIC analyzer (polarizer) for image capture is mounted in the emission changer. The visual 
DIC analyzer is NOT normally present (i.e., by request) since users tend to leave it in the optical path and 
cut fluorescence intensities by mistake (must be pulled out for all work apart from visual work). DIC uses 
a pair of prisms, one above the slide, one below. The upper one is found in the wheel on the condenser 

(Fig. 3), and should be changed manually to best match the 
objective in use. Due to space+cost limitations we have only 3 
(upper) prisms: 10x (use for 10x), 40x oil (use for 20x, 40x and 
100x), and 60x TIRF/oil (use with 60x lenses). The prisms 
match the objectives they are named for, so DIC quality will be 
best with 10, 40, 60x lenses, and acceptable with others.  The 
lower shift prism is constant for all objectives.  It has a knurled 
screw that allows you change the contrast and apparent 
direction of light hitting your sample (also called the shear). 
Adjust the screw to get a uniform background and details (see 
Fig. 1 “DIC shear adjustment screw”). Before you display the 
DIC image, you should optimize the optical path to get the 
most even illumination possible. To achieve Kohler 
illumination, first find your sample on the slide and make sure 
it is in focus. Then focus the condenser onto that plane by 
closing the field aperture (Fig. 3) and using the condenser 
focus knob to get the sharpest image of the closed iris leaves 
(should be a bright hexagon of light). Use the centering screws 
(Fig. 3) to center the iris image, then open the field aperture 
iris until it just vanishes from view. The iris on the condenser 
itself (Fig. 3 “condenser aperture) can be closed to enhance the 

image contrast (at the price of brightness; you will also see more dirt on your slide the more you close it 
down). 
 

Note that plastic degrades the DIC effect, and while you may get enough contrast for an image, the 

quality is far worse than for cells on a glass coverslip.  It is also best to remove the lids from plastic 
dishes, especially if there is condensation. A plastic lid with built-in glass window is available. Silicon oil 

 

Fig. 3 The condenser 

Focus knob 

Field 
aperture  

Centering 
screws 

Prism 
selection 

Condenser 
aperture 

Brightfield lamp housing  

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Summary of Contents for IX70

Page 1: ...nd MetaMorph MetaFluor software to control the system Examples of types of images that can be captured range from simple image capture bright field or fluorescence sequential capture of up to 4 fluore...

Page 2: ...edule the last person MUST shut down the system If there is another user after you 1 Clean any oil or water immersion objectives you used during your session 2 Log off from your Windows session 3 If y...

Page 3: ...rs and measurements incorrect We now have more objectives than positions in the nosepiece Objectives listed below as Available are not normally kept on the microscope but are available for use just as...

Page 4: ...showing nothing of the portions above that zone The high NA yields optical sectioning that approaches that on confocal microscopes Available 60x 1 2 water Use a hanging drop of water not oil on this o...

Page 5: ...he objective in use Due to space cost limitations we have only 3 upper prisms 10x use for 10x 40x oil use for 20x 40x and 100x and 60x TIRF oil use with 60x lenses The prisms match the objectives they...

Page 6: ...exciters or barrier filters to be set by the filter wheels Sutter controller through the software These filters also work by both by eye or by camera However the new quad mirror requires the filter to...

Page 7: ...capture but can be used in custom filter designs as well Need special filters Ask the staff about them we have more filters than turret positions so CFP YFP Chameleon FRET FURA TexRed and Cy7 cubes ar...

Page 8: ...se for either oculars or camera Pushing one of these buttons will pop up a window to tell you which cube to position in the bottom filter turret and then Continuous on the pop up window will open the...

Page 9: ...data itself Images will not save with these settings You can use the GAMMA slider to nonlinearly emphasize the bright or dimmer parts of the image Using a gamma 1 3 or so tends to make the data look...

Page 10: ...ation can be 90 200nm thick a region that limits your view to just the cellular contact to the glass It allows you to view the cellular footprint and can be used to obtain high speed images of changes...

Page 11: ...icrometer on TIRF arm and start image acquisition Note the illumination is constant unless you switch back to mercury arc via the slider or use the manual shutter on the filter cube turret There is no...

Page 12: ...menu bar to generate a live image stream and or slow the data collection rate i e collect an image every second minute hour etc TIRF Shutdown The laser should be turned off by rotating the key to off...

Page 13: ...prefer Major pulldown menus are located in the top bar and organized to task A variety of toolbars appear beside below the main menu You can move the toolbars along the top of the window by dragging t...

Page 14: ...Select OBJECTIVE narrow green Repeated shutter control prompt user to change lens Brightfield lamp ON and load system calibrations REQUIRES filter exchange Close without asking saving preset for 5 col...

Page 15: ...or the floppy disk icon equivalents WARNING keeping any ROI active an active ROI has a hatched appearance will limit all operations to the area inside the region selected that includes what gets saved...

Page 16: ...ons looping and speed controls delete a plane at a time set Z calibration note XY scaling is under Measure menu keep delete range of planes Caution always clear the old ranges before operations it rem...

Page 17: ...coarse or fine select another value from the pulldown list under the SPECIAL tab You can use this menu to set the limits for a z series collection via the Acquire AcquireZseries menu The Apps AcquireM...

Page 18: ...RatioImages creates MetaFluor like output FlattenBackground corrects for uneven lighting when no real background image exists CorrectShading flattens illumination defects based on a bright reference...

Page 19: ...calc objects that are touching w o split IMA sophisticated measure count tool more later Use to define objects in objects Active display of active ROI or window stats Measure one all ROI in one all p...

Page 20: ...matically tracks measures objects speed angles location etc Graph intensities klutzy tool to plot 1 ROI in stacks or live images obvious Window submenus All open windows are listed in LEFT Column can...

Page 21: ...eries MDA main Be sure to select YOUR directory and a name images automatically save there MDA setup Timelapse can enter 0 for number of timepoints to run indefinitely until stopped manually set wavel...

Page 22: ...Click data to show piecemeal or rightclick row or column number to do all each or RtClk upper Left corner for all Select channels to view Check for color overlay or else you will get separate stacks...

Page 23: ...t LoadImage s to extract data into regular image stacks for analysis etc You can make Z projections and rotations with appropriate data input PDF Created with deskPDF PDF Writer Trial http www docudes...

Page 24: ...ratios though most applications would just run two wavelengths Launch using the MetaFluor icon in the Meta Imaging Folder on the desktop or in Program Menu Use the left menu to install a protocol a s...

Page 25: ...ning to decrease image size and increase sensitivity a must for live cells 2x2 binning increases sensitivity of the camera 4X 4x4 increases it 16X I recommend 4x4 and use either all or at least the ND...

Page 26: ...velength save intervals and screen update intervals To run fast you might display a slow step every 3 image To run even faster takes about 50msec to change filter positions you can collect one of the...

Page 27: ...he inf name and a 1 5 to describe the wavelength to images and the file descriptor is sequence the inf file contains timing info event marks etc don t get rid of it Next define ROIs and any calibratio...

Page 28: ...ocus drift bleaching etc You get ratio plots straight away You need to calibrate values to get the real time calibrated value graph to work Calibrate the system if desired using defined buffered solut...

Page 29: ...round using the Acquire button IMAGE mode You can also use a ROI as background if drawn changing the pulldown list This is useful if drugs might alter background during an experiment Flat field or SHA...

Page 30: ...earance not values You can display fixed ranges or autoscale each wavelength using Scale16 The Ratio appearances set using ranges in ImageDispalyControls MF doesn t have the ability to show true ratio...

Page 31: ...ng the dish will increase the rate of evaporation a headache for long timelapse studies If you are doing DIC imaging you need to avoid plastic since it degrades the DIC effect One solution is to use a...

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