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Preface

MS-98E2

Copyright Notice

The material in this document is the intellectual property of MICRO-STAR

INTERNATIONAL. We take every care in the preparation of this document, but no

guarantee is given as to the correctness of its contents. Our products are under

continual improvement and we reserve the right to make changes without notice.

Trademarks

All trademarks are the properties of their respective owners.

Revision History

Revision

Date

V1.0

2017/03

Technical Support

If a problem arises with your system and no solution can be obtained from

the user’s manual, please contact your place of purchase or local distributor.

Alternatively, please visit the MSI website for technical guide, BIOS updates,

driver updates and other information, or contact our technical staff via http://www.

msi.com/support/

Summary of Contents for 919-98E2-001

Page 1: ...i MS 98E2 v1 x Industrial Computer Board ...

Page 2: ...he right to make changes without notice Trademarks All trademarks are the properties of their respective owners Revision History Revision Date V1 0 2017 03 Technical Support If a problem arises with your system and no solution can be obtained from the user s manual please contact your place of purchase or local distributor Alternatively please visit the MSI website for technical guide BIOS updates...

Page 3: ...ce anything over the power cord Always Unplug the Power Cord before inserting any add on card or mod ule All cautions and warnings on the equipment should be noted Never pour any liquid into the opening that could damage or cause electrical shock If any of the following situations arises get the equipment checked by ser vice personnel The power cord or plug is damaged Liquid has penetrated into th...

Page 4: ...ed household waste Please use the public collection system to return recycle or treat them in compliance with the local regulations 廢電池請回收 Taiwan For better environmental protection waste batteries should be collected separately for recycling or special disposal California USA The button cell battery may contain perchlorate material and requires special handling when recycled or disposed of in Cal...

Page 5: ...asures listed below Reorient or relocate the receiving antenna Increase the separation between the equipment and receiver Connect the equipment into an outlet on a circuit different from that to which the receiver is connected Consult the dealer or an experienced radio television technician for help Notice 1 The changes or modifications not expressly approved by the party responsible for complianc...

Page 6: ...tement v WEEE Statement v 1 Overview 1 1 Motherboard Specifications 1 2 Motherboard Layout 1 5 2 Hardware Setup 2 1 CPU Central Processing Unit 2 4 Memory 2 6 Power Supply 2 7 Rear Panel I O 2 8 Connector 2 11 Jumper 2 18 Slot 2 20 3 BIOS Setup 3 1 Entering Setup 3 2 The Menu Bar 3 4 Main 3 5 Advanced 3 7 Boot 3 12 Security 3 13 Chipset 3 19 Power 3 21 Save Exit 3 22 Appendix WDT GPIO A 1 WDT Samp...

Page 7: ...cy the MS 98E2 accommodates the Intel Desktop Kaby Lake S Skylake S processor and supports up to 4 2 DDR4 2133MHz 2400MHz 7th Gen U DIMM slots to provide the maximum of 64 32GB memory capacity Designed to withstand harsh industrial conditions the MS 98E2 is engineered to provide reliable performance for a wide variety of industrial applications 1 Overview ...

Page 8: ... 32GB Non ECC Network 1 x Intel I210 AT GbE LAN Co lay I211 AT 1 x Intel I219 LM GbE LAN PHY Storage SKU1 C236 6 x SATA 6Gb s RAID 0 1 5 10 1 x mSATA 1 x M 2 SKU2 H110 3 x SATA 6Gb s 1 x mSATA Expansion Slot SKU1 C236 1 x PCIe x16 slot 1 x PCIe x1 slot 1 x PCIe x8 slot signal x4 1 x PCI slot 1 x M 2 slot M Key PCIe x4 SATA 6Gb s 1 x full size Mini PCIe slot Support PCIe SATA 6Gb s USB2 0 SKU2 H110...

Page 9: ...nector 1 x Amplifier header 1 x TPM header 1 x LVDS connector SKU1 C236 1 x LVDS inverter connector SKU1 C236 1 x LVDS power jumpers SKU1 C236 1 x PCI power jumper 1 x Front audio header 1 x Chassis intrusion header 1 x Clear CMOS jumper 1 x AT ATX select jumper 1 x ME jumper 1 x LAN configure jumper 1 x SMBus connector 1 x Buzzer header Rear I O 1 x PS 2 mouse keyboard combo port 2 x USB2 0 ports...

Page 10: ...ndependent displays VGA DVI D VGA DP DVI D DP Audio Realtek ALC887 888S HD Audio Codec 1 x Amplifier header 1 x Front audio header 1 x S PDIF connector 3 x Audio jacks Line In Line Out Mic In Environment Operating Temperature 10 60o C Storage Temperature 20 80o C Humidity 5 95 RH non condensing Form Factor Micro ATX 244mmx244mm Certification CE FCC BSMI VCCI RCM SKU Comparison SKUs Features SKU1 C...

Page 11: ...t M 2 Slot LVDS Connector ME Jumper LVDS Inverter Connector COM Port Power Jumper S PDIF Connector CPU Power Connector Power Connector System Fan Connector SMBus Connector CPU Fan Connector Rear I O PCI Slot System Fan Connector USB 2 0 Connector NVM LAN Jumper Front Audio Connector LVDS Inverter Jumper PCI Slot Jumper Serial Port Mouse Keyboard Combo Port USB2 0 Port DisplayPort VGA Port USB3 0 P...

Page 12: ... PCIe Slot ME Jumper COM Port Power Jumper S PDIF Connector CPU Power Connector Power Connector System Fan Connector SMBus Connector CPU Fan Connector Rear I O PCI Slot System Fan Connector USB 2 0 Connector NVM LAN Jumper Front Audio Connector PCI Slot Jumper Serial Port Mouse Keyboard Combo Port USB2 0 Port DisplayPort VGA Port USB3 0 Port RJ45 GbE LAN Port DVI D Port Line In Line Out Mic In RJ4...

Page 13: ...llation be careful in holding the com ponents and follow the installation procedures For some components if you install in the wrong orientation the components will not work prop erly Use a grounded wrist strap before handling computer components Static electricity may damage the components 2 Hardware Setup ...

Page 14: ...236 2 11 Serial ATA Connector SATA1 3 SATA 6Gb s for SKU2 H110 2 11 Chassis Intrusion Header J4 2 12 GPIO Connector JGPIO1 2 12 USB2 0 Connector JUSB1 JUSB4 SKU1 C236 2 12 USB2 0 Connector JUSB6 JUSB7 SKU2 H110 2 12 Audio Amplifier Connector JAMP1 2 13 Front Panel Header JFP1 2 13 I2C Bus Connector JSMB1 2 13 LVDS Inverter Connector JINVT1 SKU1 C236 2 14 LVDS Connector JLVDS1 SKU1 C236 2 14 RS 232...

Page 15: ...COMP7 for JCOM1 JCOMP3 6 for JCOM3 6 2 19 LVDS Power Jumper JVDD1 SKU1 C236 2 19 PCI Slot Power Jumper JVDD2 2 19 ME Jumper ME_DIS1 2 19 Slot 2 20 PCIe Peripheral Component Interconnect Express Slot 2 20 Mini PCIe Peripheral Component Interconnect Express Slot 2 20 M 2 Slot SKU1 C236 2 20 PCI Peripheral Component Interconnect Slot 2 21 ...

Page 16: ...erly to protect the CPU from overheating Make sure that you apply an even layer of thermal paste or thermal tape between the CPU and the heatsink to enhance heat dissipation Replacing the CPU While replacing the CPU always turn off the power supply or unplug the power supply s power cord from the grounded outlet first to ensure the safety of CPU Introduction to LGA 115x CPU The surface of LGA 115x...

Page 17: ...ver and remove the plastic cap 2 Lift the load lever up to fully open position 3 After confirming the CPU direction for correct mating put down the CPU in the socket housing frame Be sure to grasp on the edge of the CPU base Note that the alignment keys are matched 4 Engage the load lever while pressing down lightly onto the load plate Alignment Key Important Visually inspect if the CPU is seated ...

Page 18: ...te the same DIMM type in each channel specifically 1 Use the same DIMM size 2 Use the same number of ranks per DIMM Installing Memory Modules 1 Unlock the DIMM slot by flipping open its side clips 2 Vertically insert the DIMM into the slot The DIMM has an off center notch at the bottom that will only allow it to fit one way into the slot Push the DIMM deeply into the slot The side clips of the slo...

Page 19: ...he proper orienta tion and the pins are aligned Then push down the power supply firmly into the connector CPU Power Connector JPWR1 This connector is used to provide power to the CPU 7 1 2 V 3 G r o u n d 5 1 2 V 1 G r o u n d 8 1 2 V 4 G r o u n d 6 1 2 V 2 G r o u n d Important Make sure that all power connectors are connected to the power supply to ensure stable operation of the motherboard ...

Page 20: ... monitor h h DVI D Port The DVI D Digital Visual Interface Digital connector allows you to connect an LCD monitor It provides a high speed digital interconnection between the com puter and its display device To connect an LCD monitor simply plug your monitor cable into the DVI connector and make sure that the other end of the cable is properly connected to your monitor refer to your monitor manual...

Page 21: ...NC NC NC NC Transmit Data Negative Transmit Data Positive Receive Data Positive Receive Data Negative Signal Ground No Connection No Connection No Connection No Connection RS 485 PIN SIGNAL DESCRIPTION 1 2 3 4 5 6 7 8 9 485 TXD 485 TXD NC NC GND NC NC NC NC Transmit Data Negative Transmit Data Positive No Connection No Connection Signal Ground No Connection No Connection No Connection No Connectio...

Page 22: ...ve LED Off No link Yellow Linked Blinking Data activity Speed LED Off 10 Mbps connection Green 100 Mbps connection Orange 1 Gbps connection h h USB3 0 Port The USB 3 0 port is backward compatible with USB 2 0 devices and supports data transfer rate up to 5 Gbit s SuperSpeed h h Line In Jack For external CD player tapeplayer or other audio devices h h Line Out Jack For speakers or headphones h h Mi...

Page 23: ...ed fan with speed sensor to take advan tage of the CPU fan control Important Please refer to the recommended CPU fans at processor s official website or consult the vendors for proper CPU cooling fan Fan cooler sets with 3 or 4 pin power connector are both available Serial ATA Connector SATA1 6 SATA 6Gb s for SKU1 C236 Serial ATA Connector SATA1 3 SATA 6Gb s for SKU2 H110 This connector is a high ...

Page 24: ...nector JGPIO1 This connector is provided for the General Purpose Input Output GPIO periph eral module USB2 0 Connector JUSB1 JUSB4 SKU1 C236 USB2 0 Connector JUSB6 JUSB7 SKU2 H110 This connector compliant with Intel I O Connectivity Design Guide is ideal for connecting high speed USB interface peripherals such as USB HDD digital cam eras MP3 players printers modems and the like 1 V C C 3 U S B 0 1...

Page 25: ... is provided for electrical connection to the front panel switches LEDs and is compliant with Intel Front Panel I O Connectivity Design Guide 1 3 1 0 N o P i n 5 R e s e t S w i t c h H D D L E D P o w e r S w i t c h P o w e r L E D 7 9 R e s e r v e d 8 6 4 2 I2C Bus Connector JSMB1 This connector known as I2C is for users to connect System Management Bus SMBus interface ...

Page 26: ...erential Signal connector provides a digital interface typically used with flat panels After connecting an LVDS interface flat panel to the JLVDS1 be sure to check the panel datasheet and set the LVDS jumper to proper power voltage Important Pin 12 is a detect pin When using a customized LVDS cable pin 12 should be a signal ground with a low impedance Otherwise LVDS will not function ...

Page 27: ... D S R 9 2 7 N R T S 9 2 8 N C T S 9 3 0 N o C o n n e c t i o n 3 1 N D C D 1 0 3 3 N S O U T 1 0 3 5 G N D 3 7 N R T S 1 0 3 2 N S I N 1 0 3 4 N D T R 1 0 3 6 N D S R 1 0 3 8 N C T S 1 0 4 0 K E Y 9 N o C o n n e c t i o n 1 9 N o C o n n e c t i o n 2 9 N o C o n n e c t i o n 3 9 N o C o n n e c t i o n LPC Debug Port Connector JTPM1 With TPM Support This connector works as LPC debug port and ...

Page 28: ...1 C236 The USB 3 0 port is backwards compatible with USB 2 0 devices It supports data transfer rates up to 5Gbits s SuperSpeed 5 U S B 3 _ T X _ C _ D N 4 G r o u n d 3 U S B 3 _ R X _ D P 2 U S B 3 _ R X _ D N 1 P o w e r 1 0 N C 9 U S B 2 0 8 U S B 2 0 7 G r o u n d 6 U S B 3 _ T X _ C _ D P 2 0 N o P i n 1 9 P o w e r 1 8 U S B 3 _ R X _ D N 1 7 U S B 3 _ R X _ D P 1 6 G r o u n d 1 5 U S B 3 _...

Page 29: ...Guide 1 M I C L 3 M I C R 1 0 H e a d P h o n e D e t e c t i o n 5 H e a d P h o n e R 7 S E N S E _ S E N D 9 H e a d P h o n e L 8 N o P i n 6 M I C D e t e c t i o n 4 N C 2 G r o u n d S PDIF Pinheader JSPDI1 This pinheader is used to connect S PDIF Sony Philips Digital Interconnect Format interface for digital audio transmission 2 S P D I F 3 G N D 1 5 V C C ...

Page 30: ...s a power supply from an external battery to keep the data of system configuration With the CMOS RAM the system can automatically boot OS every time it is turned on If you want to clear the system configuration set the jumper to clear data 1 1 Normal Clear CMOS Important You can clear CMOS by shorting 2 3 pin while the system is off Then return to 1 2 pin position Avoid clearing the CMOS while the...

Page 31: ...or JCOM3 6 5V 12V 1 1 1 1 JCOM1 Power select by BIOS RI Support JCOMP7 for JCOM1 LVDS Power Jumper JVDD1 SKU1 C236 Use this jumper to specify the operation voltage of the LVDS display 1 1 3 3V 5V PCI Slot Power Jumper JVDD2 Use this jumper to specify the power for PCI slot 3 3V 5V 1 1 ME Jumper ME_DIS1 This jumper enables disables ME 1 1 Normal ME Disable ...

Page 32: ...Interconnect Express Slot The Mini PCIe slot is provided for wireless LAN cards TV tuner cards Robson NAND Flash cards and other Mini PCIe cards The MINIPCIE2 is also shared to be mSATA slot The mSATA slot is for mSATA interface solid state drives SSD Important Support PCIe SATA 6Gb s USB2 0 for SKU1 support SATA 6Gb s for SKU2 M 2 Slot SKU1 C236 The M 2 slot is provided for M 2 interface device ...

Page 33: ...pansion cards Important When adding or removing expansion cards make sure that you unplug the power supply first Meanwhile read the documentation for the expansion card to config ure any necessary hardware or software settings for the expansion card such as jumpers switches or BIOS configuration ...

Page 34: ...2 22 Hardware Setup ...

Page 35: ...message appears on the screen at system startup and re quests users to run SETUP Users want to change the default settings for customized features Important Please note that BIOS update assumes technician level experience As the system BIOS is under continuous update for better system performance the illustrations in this chapter should be held for reference only 3 BIOS Setup ...

Page 36: ...efore you respond and you still wish to enter Setup restart the system by turning it OFF and On or pressing the RESET button You may also restart the system by simultaneously pressing Ctrl Alt and De lete keys Important The items under each BIOS category described in this chapter are under continuous update for better system performance Therefore the description may be slightly different from the ...

Page 37: ...a right pointer symbol appears to the left of certain fields that means a sub menu can be launched from this field A sub menu contains additional op tions for a field parameter You can use arrow keys to highlight the field and press Enter to call up the sub menu Then you can use the control keys to enter values and move from field to field within a sub menu If you want to return to the main menu j...

Page 38: ...specify the priority of boot devices Security Use this menu to set supervisor and user passwords Chipset This menu controls the advanced features of the onboard chipsets Power Use this menu to specify your settings for power management Save Exit This menu allows you to load the BIOS default values or factory default settings into the BIOS and exit the BIOS setup utility with or without changes ...

Page 39: ...3 5 MS 98E2 Main SKU1 C236 SKU2 H110 System Date This setting allows you to set the system date The date format is Day Month Date Year ...

Page 40: ...3 6 BIOS Setup System Time This setting allows you to set the system time The time format is Hour Min ute Second SATA Mode Selection This setting specifies the SATA controller mode ...

Page 41: ...he booting sequence This delay ensures that the logo is displayed for a suffi cient amount of time Therefore it is recommended that you disable this BIOS feature for a faster boot up time Bootup NumLock State This setting is to set the Num Lock status when the system is powered on Setting to On will turn on the Num Lock key when the system is powered on Setting to Off will allow users to use the a...

Page 42: ... when combined with a supporting operating system This functionality allows the processor to classify areas in memory by where application code can execute and where it cannot When a malicious worm attempts to insert code in the buffer the processor disables code exe cution preventing damage or worm propagation Intel R SpeedStep TM EIST Enhanced Intel SpeedStep Technology allows the system to dyna...

Page 43: ...s setting is used to change the address IRQ settings of the specified serial port Mode Select Select an operation mode for Serial Port 1 Power Voltage Select the power voltage for Serial Port 1 Watch Dog Timer You can enable the system watch dog timer a hardware timer that generates a reset when the software that it monitors does not respond as expected each time the watch dog polls it ...

Page 44: ...s display the current status of all monitored hardware devices components such as voltages temperatures and all fans speeds Smart Fan Configuration CPUFAN1 SYSFAN1 2 3 These settings enable disable the Smart Fan function Smart Fan is an ex cellent feature which will adjust the CPU system fan speed automatically de pending on the current CPU system temperature avoiding the overheating to damage you...

Page 45: ...iver installed such as DOS and SCO Unix Audio Controller This setting enables disables the onboard audio controller Launch OnBoard LAN OpROM These settings enable disable the initialization of the onboard onchip LAN Boot ROM during bootup Selecting Disabled will speed up the boot process GPIO Group Configuration GPO0 GPO3 Data These settings control the operation mode of the specified GPIO ...

Page 46: ...o speed up the boot process Video This setting controls the execution of UEFI and Legacy Video OpROM Boot Option Priorities This setting allows users to set the sequence of boot devices where BIOS at tempts to load the disk operating system Hard Drive BBS Priorities This setting allows users to set the priority of the specified devices First press Enter to enter the sub menu Then you may use the a...

Page 47: ...3 13 MS 98E2 Security SKU1 C236 SKU2 H110 ...

Page 48: ...the BIOS Setup utility Chassis Intrusion The field enables or disables the feature of recording the chassis intrusion status and issuing a warning message if the chassis is once opened Intel Trusted Execution Technology Intel Trusted Execution Technology provides highly scalable platform security in physical and virtual infrastructures PCH FW Configuration SKU1 C236 SKU2 H110 ...

Page 49: ...Intel ME Manageability Features AMT BIOS Features SKU1 C236 This setting specifies the AMT BIOS Features AMT Configuration SKU1 C236 Intel Active Management Technology AMT is hardware based technology for remotely managing and securing PCs out of band Comms Hub Support This setting enables disables Comms Hub Support JHI Support This setting enables disables JHI Support Core BIOS Done Message This ...

Page 50: ...edential storage and key management used by Microsoft Windows ME Debug Configuration Trusted Computing Security Device Support This setting enables disables BIOS support for security device When set to Disable the OS will not show security device TCG EFI protocol and INT1A interface will not be available ...

Page 51: ...e redirection you need a terminal supporting ANSI terminal protocol and a RS 232 null modem cable connected between the host system and terminal s This setting specifies the type of terminal device for console redirection Bits per second Data Bits Parity Stop Bits This setting specifies the transfer rate bits per second data bits parity stop bits of Console Redirection Flow Control Flow control is...

Page 52: ... the recorder mode and the resolution 100x31 Legacy OS Redirection Resolution This setting specifies the redirection resolution of legacy OS Putty Keypad PuTTY is a terminal emulator for Windows This setting controls the numeric keypad for use in PuTTY Redirection After BIOS POST This setting determines whether or not to keep terminals console redirection running after the BIOS POST has booted ...

Page 53: ...3 19 MS 98E2 Chipset SKU1 C236 SKU2 H110 ...

Page 54: ... locked memory This is because it is locked for video use only and as such is invisible and unable to be used by the operating system DVMT Total Gfx Mem This setting specifies the memory size for DVMT Primary IGFX Boot Display Use the field to select the type of device you want to use as the display s of the system LVDS SKU1 C236 This setting enables disables LVDS LCD Panel Type SKU1 C236 This set...

Page 55: ...ower failure or interrupt occurred Deep Sleep Mode The setting specifies the deep sleep mode Advanced Resume Events Control OnChip GbE USB The item allows the activity of the OnChip GbE USB device to wake up the sys tem from S3 S4 sleep state PCIE PME Ring This field specifies whether the system will be awakened from power saving modes when activity or input signal of onboard PCIE PME Ring is dete...

Page 56: ...mized Defaults Use this menu to load the default values set by the motherboard manufacturer specifically for optimal performance of the motherboard Save as User Defaults Save changes as the user s default profile Restore User Defaults Restore the user s default profile Launch EFI Shell from filesystem device This setting helps to launch the EFI Shell application from one of the available file syst...

Page 57: ...2 A 1 This appendix provides the sample codes of WDT Watch Dog Timer and GPIO General Purpose Input Output Appendix WDT GPIO ...

Page 58: ...ange to WDT mov dx SIO_INDEX_Port mov al 07h out dx al mov dx SIO_DATA_Port mov al WatchDog_LDN out dx al Acive WDT mov dx SIO_INDEX_Port mov al 30h out dx al mov dx SIO_DATA_Port in al dx or al 01h out dx al set timer mov dx SIO_INDEX_Port mov al 0F6h out dx al mov dx SIO_DATA_Port mov al WDT_Timer out dx al set UINT mov dx SIO_INDEX_Port mov al 0F5h out dx al mov dx SIO_DATA_Port mov al WDT_UNIT...

Page 59: ...Ch 9Ch 9Ch SIO GPIO Register 22h 22h 22h 22h Bit 4 5 6 7 Sample code 2 2 2 2 SMBUS_BASE_ADDRESS equ F040h IO Address SLAVEADDRESS equ 9Ch Slave Address GPI0_REG equ 42h GPO0_REG equ 22h GPO0_Value equ 00010000b ______________________________________________________________________________ Sample Code 1 Get GPI 0 status mov dx GPI0_REG in al dx al bit0 GPI 0 status 2 Set GPO 0 status to high mov dx...

Page 60: ...A 4 WDT GPIO ...

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