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Instruction for Use HISTO TYPE Rainbow QS6 

Version: 02/2021 

Page 14 of 16 

 

8.1.3  Analytical specificity / cross reactive substances 

 

Eight  substances  that  might  interfere  with  the  assay  were  tested  and  the  following  concentrations 
were shown to have no detrimetal effect on the results: 

 

Substance 

Maximal non-inhibitory concentration 

Protein (BSA) 

0.2 mg/ml 

TE (Tris/EDTA, pH 8.0) 

7 mM Tris, 0.7 mM EDTA 

NaCl 

20 mM 

Ethanol 

1% 

Haemoglobin 

0.01 mg/ml 

Sodium Citrate 

7 mM 

DNA extraction buffer 1 (Qiagen QIAamp DNA Blood Kits) 

1% 

DNA extraction buffer 2 (Qiagen QIAamp DNA Blood Kits) 

2% 

 

9. 

LIMITS OF THE METHOD 

During DNA isolation, special attention must be paid to the fact that the RT-PCR method reacts very 
sensitively  to  cross-contaminations.  Special  care  should  be  taken  to  avoid  contamination  of  kit 
reagents and other laboratory materials with amplicons or DNA. 

 

The  performance  of  a  negative  control  without  DNA  in  well  H12  is  strongly  recommended.  No 
fluorescence signal below 36 Cq should be detected in the NTC (H12) with molecular grade water. 
In the case of signal development in the negative control, the PCR laboratory workplace may have 
to be decontaminated from DNA and the reagents exchanged if necessary. 

 

All  devices  (e.g.  pipettes,  real-

time  cyclers)  must  be  calibrated  according  to  the  manufacturer’s 

specifications.  
 

10. 

INTERNAL QUALITY CONTROL 

Internal  quality  controls for  new lots  can be performed with a combination of DNA specimens with 
known  HLA  type.  An  internal  control  to  verify  successful  amplification  is  included  in  the  dried 
oligomixes. 

 

Performance of negative controls (well H12) to detect possible contaminations is recommended. For 
this purpose, prepare a test without DNA (NTC), see section 6.4 Amplification.  

Summary of Contents for HISTO TYPE Rainbow QS6

Page 1: ...ample information into PlexTyper Software 5 6 4 Amplification 5 6 5 Export of results from QuantStudio 6 Flex System 9 6 6 Evaluation and interpretation of the results 10 6 7 Import of the results fil...

Page 2: ...s amplified in a real time PCR with sequence specific primers SSP The primers were specially developed for the selective amplification of segments of specific HLA alleles or allele groups The amplicon...

Page 3: ...2 Real time PCR Cycler validated cycler see 4 3 Plate holder QS6 REF 726321 Variable pipettes 0 5 1000 l and pipette tips Application spatula for qPCR Seal Molecular grade DNAse free water Suitable pl...

Page 4: ...amplification detection use two separate rooms if possible Use devices and other materials only at the respective workplaces and do not exchange them 6 2 DNA Isolation The specimen material for the i...

Page 5: ...entity This Run ID should be used when setting up the file identity in the PCR machine If the PCR excel export file is not pre labelled with the RUN ID the file can be manually prefixed with the corre...

Page 6: ...te the test DNA with other concentrations For DNA of different stock concentrations use the dilution table below to adjust the DNA to working concentration Add 8 l Molecular grade water and 2 l Plex M...

Page 7: ...ely sealed particularly at the edge of the plate Make sure that the liquid has contacted the dried mix and there are no bubbles or air gaps in the reaction wells If bubbles appear gently tap the tubes...

Page 8: ...Flex System Block type Fast 96 Well 0 1mL Experiment type Comparative Ct Ct Reagent type TaqMan Reagents Run properties Standard Define Targets Please note Custom dye instrument calibration must be p...

Page 9: ...rt the raw data in excel format with the following steps 1 Select the eds file double click on a eds file If the QuantStudio RealTime PCR software is installed the software will automatically open the...

Page 10: ...s required for the evaluation are available from the BAG Diagnostics download server www service bag diagnostics com Please make a note of the lot number of the kit The interpretation kit files are pr...

Page 11: ...s possible contamination by the PlexTyper software and a warning message is generated Amplification signals above Cq 36 in the NTC are regarded as PCR artefacts and are disregarded If PCR contaminatio...

Page 12: ...No results at an HLA locus 7 WARNINGS AND DISPOSAL INSTRUCTIONS HISTO TYPE Rainbow QS6 is designed for in vitro diagnostic use The kit should only be used by specially trained qualified personnel All...

Page 13: ...t is checked for each lot with control specimens with known HLA alleles The kit determines the HLA Loci A B C DRB1 DRB3 DRB4 DRB5 DQA1 DQB1 DPA1 and DPB1 8 1 SPECIFIC PERFORMANCE CHARACTERISTICS 8 1 1...

Page 14: ...n to avoid contamination of kit reagents and other laboratory materials with amplicons or DNA The performance of a negative control without DNA in well H12 is strongly recommended No fluorescence sign...

Page 15: ...ll of the tube Careful pipetting Spin down PCR plate User error Ensure all wells receive the required volume of reagents Evaporation of the reagents due to incorrect closing of the PCR tubes Make sure...

Page 16: ...ue number RTU Ready to use 14 LITERATURE 1 Mack S J et al 2013 Tissue Antigens 81 194 203 2 Beutler E et al 1990 BioTechniques 9 166 15 REVIEW HISTORY Version 01 2021 Issue 2021 04 Initial version Ver...

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