Supermicro SuperServer 5039MS-H12TRF User Manual Download Page 33

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Chapter 3: Maintenance and Component Installation

Note:

Enterprise level hard disk drives are recommended for use in Supermicro chassis and

servers. For information on recommended HDDs, visit the Supermicro Web site at http://www.
supermicro.com/products/nfo/storage.cfm.

Figure 3-7. Installing 2.5" HDDs

Summary of Contents for SuperServer 5039MS-H12TRF

Page 1: ...USER S MANUAL Revision 1 0 SuperServer 5039MS H12TRF...

Page 2: ...hen the equipment is operated in a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instr...

Page 3: ...and the user s manual for your server Supermicro product manuals http www supermicro com support manuals Product drivers and utilities ftp ftp supermicro com Product safety info http www supermicro c...

Page 4: ...cation 15 Rack Precautions 15 Server Precautions 16 Rack Mounting Considerations 16 2 2 Installing the Rails 18 Chapter 3 Maintenance and Component Installation 3 1 Removing Power 19 3 2 Accessing the...

Page 5: ...Installation 44 Installing the Windows OS for a RAID System 44 Installing Windows to a Non RAID System 44 5 2 Driver Installation 45 5 3 SuperDoctor 5 46 5 4 IPMI 46 Chapter 6 BIOS 6 1 Introduction 47...

Page 6: ...r Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Technical S...

Page 7: ...included parts are listed below Main Parts List Description Part Number Quantity Backplane BPN SAS 939HS One Fans FAN 0145L4 Four CPU passisve heatsink SNK P0047PSR One per node Air flow shroud MCP 31...

Page 8: ...K04BP CPU Intel Xeon E3 1200 v5 Skylake S Socket Type H4 LGA1151 Memory Four DIMM ECC UDIMM VLP memory up to 64 GB Chipset Intel PCH C236 chipset Expansion Slots One MicroLP expansion module per node...

Page 9: ...ng the button will alternately power on or remove power from the node See the table below for the LED indications Node Power Button LED LED Appearance Description Green The node is powered on and oper...

Page 10: ...Features The SC939HS R2K04BP is a 3U chassis holding 12 discreet computing nodes The chassis front offers access to the dual power modules It also includes two dedicated LAN ports to provide IPMI man...

Page 11: ...11 Chapter 1 Introduction Figure 1 4 Chassis Rear View Rear Features The illustration below shows the features included on the rear of the chassis Exhaust Fans 4 Power Plugs 2...

Page 12: ...r to Chapter 4 Notes indicates the location of pin 1 Jumpers LED indicators not indicated are used for testing only BMC Intel PCH CPU USB2 3 0 I SATA6 JSD1 SW2 LED5 JUIDB1 LED6 MAC CODE BAR CODE BIOS...

Page 13: ...Onboard Battery I SATA0 I SATA6 SATA 3 0 Connectors J21 CPU Micro LP PCI E 3 0 x8 Slot JKVM1 VGA KVM VGA Monitor UART Connector for Remote Console Redirection or Remote Network Interface JSD1 SATA Di...

Page 14: ...8 8GT s x4 DMI Socket H4 FLASH SPI 128Mb SPI LPC TPM1 2 Header AST2400 PCIe3 0_x1 PCIe3 0_x8 8 0GT s PCIe x8 MLP SLOT SATA III 6Gb s 1 X SATA III DOM Port 19 USB3 5 USB2 5 Port 14 Port 10 15 18 PCH H...

Page 15: ...tely 30 inches of clearance in the back of the rack to allow sufficient space for airflow and access when servicing This product should be installed only in a Restricted Access Location dedicated equi...

Page 16: ...mperature If installed in a closed or multi unit rack assembly the ambient operating temperature of the rack environment may be greater than the room s ambient temperature Therefore consideration shou...

Page 17: ...are provided to ensure your safety This unit should be mounted at the bottom of the rack if it is the only unit in the rack When mounting this unit in a partially filled rack load the rack from the bo...

Page 18: ...art Note the arrow on the rail which indicates the end that attaches to the front of the rack 3 Slide the rail sections apart far enough to match the depth of the rack Hang the hooks on the rear end o...

Page 19: ...Please follow the procedures given in each section 3 1 Removing Power Use the following procedure to ensure that power has been removed from the system This step is necessary when removing or installi...

Page 20: ...ne Removing the Top Cover 1 Remove power from the system as described in Section 3 1 2 Remove the screws securing the cover to the chassis four on top and two on each side See Figure 3 1 3 Lift the co...

Page 21: ...ing Installing a Node Release Tab Handle Removing Nodes from the System 1 Power down the individual node by pressing that node s power button 2 Press and hold down the release tab on the front of the...

Page 22: ...12TRF User s Manual 22 Connecting to a Node USB COM and serial port capabilties can be added to any node through the KVM port on the front Plug in the adapter dongle Figure 3 3 Adapter to Provide USB...

Page 23: ...installed make sure that the plastic protective socket cover is in place and none of the socket pins are bent otherwise contact your retailer immediately Refer to the Supermicro website for updates on...

Page 24: ...Align the notches the semi circle cutouts on the processor with the socket keys 5 Once aligned carefully place the processor into the socket Do not drop the processor on the socket move or rub the pr...

Page 25: ...plate onto the processor The plastic protective cover on the load plate will pop off Save the cover to protect the socket if the processor is ever removed 7 Making sure the slot in the load plate slid...

Page 26: ...amount has already been applied 1 Place the heatsink on top of the CPU so that the four mounting holes are aligned with those on the heatsink retention mechanism 2 Screw in two diagonal screws i e th...

Page 27: ...tion Memory Support The X11SSE F supports up to 64GB of ECC DDR4 2133 1866 1600 1333 unbuffered UDIMM memory in four memory slots Populating two adjacent slots at a time with memory modules of the sam...

Page 28: ...M Module Population Sequence When installing memory modules the DIMM slots must be populated in the following order DIMMB2 DIMMA2 then DIMMB1 DIMMA1 The blue slots must be populated first Note Be sure...

Page 29: ...on both ends of the module press it straight down into the slot until the module snaps into place 4 Press the release tabs to the locked position to secure the DIMM module into the slot 5 Repeat the p...

Page 30: ...AOM CTG i1SM Two 10G baseT ports optional AOM CTGS i2T The MicroLP expansion module is inserted into a riser card and secured to two brackets as shown below This assembly is inserted into the expansio...

Page 31: ...Battery 1 Remove power from the system as described in section 3 1 and remove the node from the chassis 2 Push aside the small clamp that covers the edge of the battery When the battery is released l...

Page 32: ...in each node tray Installing Hard Drives 1 Power down the node and remove it from the chassis following the procedure in Section 3 2 2 Insert the hard drive with the printed circuit board side facing...

Page 33: ...on Note Enterprise level hard disk drives are recommended for use in Supermicro chassis and servers For information on recommended HDDs visit the Supermicro Web site at http www supermicro com product...

Page 34: ...therboards contained in separate nodes Three nodes each share a common fan see figure below Corresponding Nodes and Fans Cooling Zone Node Fans Zone 1 Nodes 1 through 6 Fans 1 2 Zone 2 Nodes 7 through...

Page 35: ...quired and no need to remove any other parts inside the chassis Replacing a Fan 1 Visually inspect the fans to see which one has failed 2 Push both release tabs on the fan inward 3 Remove the fan from...

Page 36: ...does not require screws to set up Installing the Air Shroud 1 Remove the node from the chassis onto a flat non conductive surface 2 If necessary move any cables that interfere with the air shroud pla...

Page 37: ...100 120v or 180 240v An amber light will be illuminated on the power supply when the power is off An illuminated green light indicates that the power supply is operating Changing the Power Supply 1 Wi...

Page 38: ...LED indicator The UID Indicator provides easy identification of a system unit that may be in need of service Note UID can also be triggered using IPMI on the motherboard For more information on IPMI...

Page 39: ...ropriate cables here to provide power support for your Serial Link DOM devices DOM Power Pin Definitions Pin Definition 1 5V 2 Ground 3 Ground Data Cables The data cables in the system have been caref...

Page 40: ...pport or remote networking interface Using the adapter it provides two USB ports USB0 1 a COM port and a serial port KVM Port Universal Serial Bus USB Ports Two Universal Serial Bus 2 0 ports USB0 1 a...

Page 41: ...Connector Pins Jumper Setting 3 2 1 3 2 1 CMOS Clear JBT1 is used to clear CMOS which will also clear any passwords Instead of pins this jumper consists of contact pads to prevent accidentally clearin...

Page 42: ...eir own application software to disable it Management Engine ME Recovery Use jumper JPME1 to select ME Firmware Recovery mode which will limit resource allocation for essential system operation only i...

Page 43: ...ause the remain ing power supply to run out unexpectedly and your motherboard to shut down Title Pin Definitions Jumper Setting Definition Pins 1 2 Override power Pins 2 3 Disabled 4 5 LED Indicators...

Page 44: ...SB port on the system Note for older legacy OS s please use a method to slipstream the drivers 3 Select the partition on the drive in which to install Windows 4 Browse the USB folder for the proper dr...

Page 45: ...er option is to go to the Supermicro website at http www supermicro com products Find the product page for your motherboard here where you may download individual drivers and utilities to your hard dr...

Page 46: ...Doctor 5 Management Server SSM Server you can remotely control power on off and reset chassis intrusion for multiple systems with SuperDoctor 5 or IPMI SuperDoctor 5 Management Server monitors HTTP FT...

Page 47: ...F1 F2 etc Each main BIOS menu option is described in this manual The Main BIOS screen has two main frames The left frame displays all the options that can be configured Grayed out options cannot be c...

Page 48: ...system System Time System Date You can edit this field to change the system time and date Highlight System Time or System Date using the Arrow keys Enter new values through the keyboard Press the Tab...

Page 49: ...row keys to select Boot Setup and press Enter to access the submenu items Boot Feature Quiet Boot Use this feature to select the screen display between the POST messages and the OEM logo upon bootup S...

Page 50: ...o function as bootable devices at bootup The options are Immediate and Postponed Re try Boot If this item is enabled the BIOS will automatically reboot the system from a specified boot device after it...

Page 51: ...State to allow the system to resume its last power state before a power loss The options are Power On Stay Off and Last State CPU Configuration The following CPU information will display CPU Signature...

Page 52: ...PU If set to Enabled the hardware prefetcher will prefetch streams of data and instructions from the main memory to the L2 cache to improve CPU performance The options are Disabled and Enabled Adjacen...

Page 53: ...CPU core in relation to the bus speed when one CPU core is active Press or on your keyboard to change the value Enter 0 to use the manufacture default setting 2 Core Ratio Limit Override This increas...

Page 54: ...is feature allows the user to enable or disable the C State Pre Wake The options are Disabled and Enabled Package C State Limit Use this feature to set the Package C State limit The options are C0 C1...

Page 55: ...mode Each mode has different values which can be entered manually The options are No Change in Owner EPOCHs Change to New Random Owner EPOCHs and Manual User Defined Owner EPOCHs PRMRR Size The BIOS m...

Page 56: ...n a small form factor SFF computer The options are Enabled and Disabled PM Support Use this item to enable the IGFX Power Management function The options are Enabled and Disabled PAVP Enable Use this...

Page 57: ...0 Slot Power Limit Value Use this feature to set the upper limit on the power supplied by the PCIE slot Press or on your keyboard to change this value The default setting is 75 PEG0 Slot Power Limit S...

Page 58: ...GB 3 GB 3 25 GB and 3 5 GB Energy Performance Gain Use this feature to enable or disable the energy performance gain The options are Disabled and Enabled Memory Scrambler Select Enabled to enable memo...

Page 59: ...Disabled SATA Mode Selection Use this item to select the mode for the installed SATA drives The options are AHCI and RAID SATA Frozen Use this item to enable the HDD Security Frozen Mode The options a...

Page 60: ...t PCI decoding Select Enabled to decode a PCI device that supports 64 bit in the space above 4G Address The options are Enabled and Disabled SR IOV Support Use this feature to enable or disable Single...

Page 61: ...port The options are Enabled and Disabled Logical Device Settings This item displays the status of a serial part specified by the user Serial Port 1 Change Settings This feature specifies the base I...

Page 62: ...2E8h IRQ 3 4 5 6 7 9 10 11 12 Intel Server Platform Services The following Intel Server Platform Services information will display ME BIOS Interface Version SPS Version ME FW Status Value ME FW State...

Page 63: ...its and 8 Bits COM1 Parity A parity bit can be sent along with regular data bits to detect data transmission errors Select Even if the parity bit is set to 0 and the number of 1 s in data bits is even...

Page 64: ...n set to Always Enable legacy console redirection remains enabled when booting the OS The options are Always Enable and Bootloader SOL Console Redirection Select Enabled to use the SOL port for Consol...

Page 65: ...slower devices are used The options are 1 and 2 SOL Flow Control Use this feature to set the flow control for Console Redirection to prevent data loss caused by buffer overflow Send a Stop signal to s...

Page 66: ...ncy Management Services EMS to communicate with a remote host server The options are COM1 and SOL COM2 Terminal Type Use this feature to select the target terminal emulation type for Console Redirecti...

Page 67: ...rusted Computing Configuration Security Device Support If this feature and the TPM jumper on the motherboard are both set to Enabled onbaord security devices will be enabled for TPM Trusted Platform M...

Page 68: ...may not be supported by all operating systems The options are Sha 1 and Sha256 Device Select Use this feature to select the TPM version TPM 1 2 will restrict support to TPM 1 2 devices TPM 2 0 will re...

Page 69: ...able or disable all features of the SMBIOS Event Logging during system boot The options are Enabled and Disabled Erasing Settings Erase Event Log If No is selected data stored in the event log will no...

Page 70: ...and Enabled MECI The Multiple Event Count Increment MECI counter counts the number of occurences that a duplicate event must happen before the MECI counter is incremented This is a numeric value The d...

Page 71: ...ware installed in your system System Event Log Enabling Disabling Options SEL Components Select Enabled for all system event logging at bootup The options are Enabled and Disabled Erasing Settings Era...

Page 72: ...ws the user to select the source of the IP address for this computer If Static is selected you will need to know the IP address of this computer and enter it to the system manually in the field If DHC...

Page 73: ...ons are Disable and Enable 6 6 Security This menu allows the user to configure the following security settings for the system Password Check Select Setup for the system to check for a password at Setu...

Page 74: ...led Key Management This submenu allows the user to configure the following Key Management settings Provision Factory Default Keys Select Enabled to install the default Secure Boot keys set by the manu...

Page 75: ...the manufacturer s defaults to the existing DB Select No to load the DB from a file The options are Yes and No Forbiden Signatures Set New Key Select Yes to load the DBX from the manufacturer s defaul...

Page 76: ...rities This option prioritizes the order of bootable devices that the system to boot from Press Enter on each entry from top to bottom to select devices If the item above set to Legacy UEFI Dual the f...

Page 77: ...rom which the system will boot during startup The settings are any pre defined boot device Hard Disk Drive BBS Priorities This feature allows the user to specify which hard disk drive devices are boot...

Page 78: ...ss Enter Save Changes and Reset When you have completed the system configuration changes select this option to leave the BIOS setup utility and reboot the computer so the new system configuration para...

Page 79: ...t Save as User Defaults from the Exit menu and press Enter This enables the user to save any changes to the BIOS setup for future use Restore User Defaults To set this feature select Restore User Defa...

Page 80: ...occurs you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible beeps The numbers on the fatal error list on the f...

Page 81: ...com support manuals AMI BIOS POST Codes User s Guide When BIOS performs the Power On Self Test it writes checkpoint codes to I O port 0080h If the computer cannot complete the boot process a diagnosti...

Page 82: ...or assistance Only certified technicians should attempt to install or configure components Read this appendix in its entirety before installing or configuring components in the Supermicro chassis Thes...

Page 83: ...o considere los riesgos de la corriente el ctrica y familiar cese con los procedimientos est ndar de prevenci n de accidentes Al final de cada advertencia encontrar el n mero que le ayudar a encontrar...

Page 84: ...ken dient u zich bewust te zijn van de bij een elektrische installatie betrokken risico s en dient u op de hoogte te zijn van de standaard procedures om ongelukken te voorkomen Gebruik de nummers aan...

Page 85: ...mentaci n Attention Avant de brancher le syst me sur la source d alimentation consulter les directives d installation Circuit Breaker Waarschuwing Raadpleeg de installatie instructies voordat u het sy...

Page 86: ...brecorrientes del edificio Aseg rese de que el dispositivo de protecci n no sea superior a 250 V 20 A Attention Pour ce qui est de la protection contre les courts circuits surtension ce produit d pend...

Page 87: ...e energ a y del cable el ctrico quitado de los m dulos de fuente de alimentaci n antes de tener acceso el interior del chasis para instalar o para quitar componentes de sistema Attention Le syst me do...

Page 88: ...abels aangesloten op de voeding en van de behuizing te verwijderen Equipment Installation Warning Only trained and qualified personnel should be allowed to install replace or service this equipment Wa...

Page 89: ...tention Il est vivement recommand de confier l installation le remplacement et la maintenance de ces quipements des personnels qualifi s et exp riment s Warning This unit is intended for installation...

Page 90: ...a una de estas reas mediante la utilizaci n de una herramienta especial cerradura con llave u otro medio de seguridad Attention Cet appareil doit tre install e dans des zones d acc s r serv s L acc s...

Page 91: ...mblable ou quivalent recommand e par le fabricant Jeter les piles usag es conform ment aux instructions du fabricant Advertencia Existe peligro de explosi n si la bater a se reemplaza de manera incorr...

Page 92: ...aanbevolen wordt Gebruikte batterijen dienen overeenkomstig fabrieksvoorschriften afgevoerd te worden Redundant Power Supplies Warning This unit might have more than one power supply connection All c...

Page 93: ...mloos te maken Advertencia Puede que esta unidad tenga m s de una conexi n para fuentes de alimentaci n Para cortar por completo el suministro de energ a deben desconectarse todas las conexiones Atten...

Page 94: ...dvertencia Cuando el sistema est en funcionamiento el voltaje del plano trasero es peligroso Tenga cuidado cuando lo revise Attention Lorsque le syst me est en fonctionnement des tensions lectriques c...

Page 95: ...umplir con las normas de electricidad locales y nacionales Backplane Waarschuwing Een gevaarlijke spanning of energie is aanwezig op de backplane wanneer het systeem in gebruik is Voorzichtigheid is g...

Page 96: ...ale elektriciteitsvoorschriften Warnung Die Entsorgung dieses Produkts sollte gem allen Bestimmungen und Gesetzen des Landes erfolgen Warning Ultimate disposal of this product should be handled accord...

Page 97: ...Swap Fan Warning Warning The fans might still be turning when you remove the fan assembly from the chassis Keep fingers screwdrivers and other objects away from the openings in the fan assembly s hous...

Page 98: ...dos los destornilladores y todos los objetos lejos de las aberturas del ventilador Attention Il est possible que les ventilateurs soient toujours en rotation lorsque vous retirerez le bloc ventilateur...

Page 99: ...tadores de CA La utilizaci n de otros cables y adaptadores podr a ocasionar un mal funcionamiento o un incendio Aparatos El ctricos y la Ley de Seguridad del Material proh be el uso de UL o CSA cables...

Page 100: ...code pour tous les autres appareils lectriques que les produits d sign s par Supermicro seulement AC Electrical Appliance and Material Safety Law UL CSA UL CSA Waarschuwing Bij het installeren van het...

Page 101: ...off control to a computer system at bootup C 2 How to Recover the UEFI BIOS Image the Main BIOS Block A UEFI BIOS flash chip consists of a recovery BIOS block and a main BIOS block a main BIOS image T...

Page 102: ...our website at www supermicro com to download the BIOS image into a USB flash device and rename it Super ROM for BIOS recovery use 2 Insert the USB device that contains the new BIOS image Super ROM in...

Page 103: ...want to start with BIOS recovery If you decide to proceed with BIOS recovery follow the procedures below 5 When the screen as shown above displays using the arrow key select the item Proceed with flas...

Page 104: ...prompt Note Do not interrupt this process until BIOS flashing is completed 9 After seeing the message that BIOS update is completed unplug the AC power cable from the power supply to clear the CMOS a...

Page 105: ...two 3 5 drives or four 2 5 drive SATA3 or NVMe PCI Expansion Slots One MicroLP x8 expansion module Motherboard X11SSE F proprietary form factor Dimensions 4 6 x 11 70 11 68 x 29 72 cm Chassis SC939HS...

Page 106: ...61000 3 2 3 3 CISPR 22 Class A Electromagnetic Immunity EN 55024 CISPR 24 EN 61000 4 2 EN 61000 4 3 EN 61000 4 4 EN 61000 4 5 EN 61000 4 6 EN 61000 4 8 EN 61000 4 11 Safety CSA EN IEC UL 60950 1 Compl...

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