Olympus FV3000 Safety Manual Download Page 7

 

 

Last updated on Mar 2022 

4.2 Software Initiation

 

Wait for complete initialization of microscope and Windows after logging in with your TLL 
username and password. 

Double click on:           

 

(A) The HW configuration screen will appear: 

Select Enable XY stage control 

Click on 

OK

 and wait for complete initialization. Do 

not move anything on the microscope during the 
initialization process.  

(B) Execution of IX3-SSU clean-up will pop up: 

If you are the first user of the week: 

Rotate the 

turret so that either the 1.25× or 10× objective is in 
place. Click on 

YES

 and wait for complete 

initialization. The cleaning process uses ultrasonic vibrations to dislodge dust that has 
accumulated on the stage mechanism. This adds time to the initialization process. Do not 
place anything on the stage mechanism until the initialization process is complete.  

If you are not the first user of the week: 

Click on 

NO

 and wait for complete initialization. Do 

not move anything on the microscope during the initialization process.  

On the FV31S-SW software, press on the ocular tab to 
observe the specimen using either bright field/DIC or 
fluorescence mode.  

 

For Brightfield imaging, select 

Ocular>Ocular>DIA. 

Select Cube turret #1: 

Empty

                                          

Under DIA, 

ON

 both TD shutter and Trans lamp. 

Increase intensity of Trans lamp for specimen 
viewing. 

 

For Fluorescence imaging, select 

Ocular > Ocular > 

EPI. 

Select Cube turret #1

: DAPI/FITC/TRITC

                     

Select the appropriate EPI ND Filter to control the 
fluorescence intensity.                                                                                                              
Then EPI shutter: 

Open

 

 

Keep it 

Closed

 until you are actively viewing your sample.  

 

 

Summary of Contents for FV3000

Page 1: ...oking and System Access 4 3 1 Acknowledgements 5 4 Operation Procedures 5 4 1 Switching ON Protocol 5 4 2 Objective lens 6 4 2 Software Initiation 7 4 3 Setting up directory to save images 8 4 4 Laser...

Page 2: ...Immersion Oil Modern immersion oil has no known hazards to human beings so far yet they can cause discomfort to a person if the immersion oil has been left on skin for too long or inhaled Therefore pl...

Page 3: ...taff before they are allowed to access the confocal system 2 1 To arrange a training session Please email Bioimaging Facility bioimaging tll org sg for a training session Fill in the necessary particu...

Page 4: ...er 6pm Sat Sun Public holidays If users require more slots in a particular week they can book on weekdays during non peak hours after 6pm on weekends Sat and Sun and on public holidays If extra time i...

Page 5: ...RT TIMING b Switch on the Master switch on the wall 1 PC 2 Wait until windows icon pops up c Switch on Stage controller box 3 CBH controller 4 d Optional Turn on the Metal Halide lamp 5 if needed e Tu...

Page 6: ...t to 10x objective or lower then click YES Cleaning the stage will take some time b Otherwise click NO to skip cleaning 4 2 Objective lens Objective lens Immersion media 1 25x 0 04 Plan Apochromat Air...

Page 7: ...n the stage mechanism This adds time to the initialization process Do not place anything on the stage mechanism until the initialization process is complete If you are not the first user of the week C...

Page 8: ...y to save all your images Please save in your folder You have several different options on where you can save your images Option 1 D or E Users shaalini create your own folder BPAE cells oir Do keep i...

Page 9: ...oduce intense background noise SD keep HV within 600 800 More than 800 will contribute to intense background noise Under PMT settings tab Mode Select VBF Average average a given number of scans to get...

Page 10: ...to zoom images only in the center Ideal zoom which satisfy the Nyquist limit can be achieved by zooming till the red arrow any zoom beyond it will result in poor resolution and result in more photoble...

Page 11: ...the laser power until red pixels disappear Increase Offset until a dusting of blue pixels in the background are observed Click LSM start to capture an image 4 7 How to do a Z stack for a 3D Image xyz...

Page 12: ...your timelapse experiment Interval FreeRun continues to capture images until it has completed your selected cycle You could always choose an interval of your choice 4 9 Reuse previous settings and ex...

Page 13: ...h the sample and return the stage to central position d Carefully clean the objective lens with Whatman lens tissue using 100 ethanol e Switch lens back to 10x 0 3 objective lens f Exit the FV31S SW s...

Page 14: ...ission please contact Bioimaging Group No stage movement Check the coarse fine movement setting near the focus and xy position knobs It is a physical button that has no electronic indication elsewhere...

Page 15: ...id white or coloured light sometimes red light might be indicative of error III Restart the main controller right at the bottom if none of the steps taken work especially if the machine has been left...

Page 16: ...and cannot be recovered Restart computer terminal Startup popup error code LAST_OPERATION_ NONCOMPLETED The last user did not shut down the program properly or the program encountered a fatal error du...

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