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Last updated on Mar 2022 

1. Safety Guidelines 

Please adhere to the safety guidelines for your own safety and health. When in doubt, 
always approach the bioimaging facility for assistance.  

1.1 Lasers 

Lasers in the confocal facility are class 3 lasers. This means that the lasers are strong enough 
to cause serious damage to your eyes, including temporary to permanent blindness. 
Therefore, please always follow the safety guidelines below when using the confocal 
microscopes: 

 

Before turning on the lasers, make sure the power connections are all connected 
properly. If there are any disconnected wires, please reconnect them or inform the 
facility staff. If you see any exposed wires, do not attempt to use the equipment and 
inform facility staff immediately. 

 

For all confocal systems, there is a minimum time for lasers to be switched ON/OFF. 
Please check the operation procedure for the respective microscopy system that you 
are assigned to. This is to ensure the lasers have sufficient time to heat up and cool 
down before running again. 

 

When using the lasers to image, 

NEVER

 

look directly at the laser while imaging. If a 

safety shutter is present, make sure it is in the correct position to better protect your 
eyes. 

1.2 Immersion Oil 

Modern immersion oil has no known hazards to human beings so far, yet they can cause 
discomfort to a person if the immersion oil has been left on skin for too long or inhaled. 
Therefore, please take note of the following safety guidelines for using immersion oil: 

 

Use the applicator to apply the immersion oil onto the slides for upright system.  

 

Do not touch the applicator oil directly on the objective lens as this will scratch or 
break the lens. Instead, allow the drop of oil to contact the lens surface. 

 

If the bottle containing immersion oil has oil on the sides, wipe down with kim wipes 
and ethanol. Wash hands immediately after with soap and water. 

 

Wipe immersion oil off objective lenses after use using lens paper and wash hands 
immediately after with soap and water.  

 

Always clean up any spilled oil or residue from oily slides immediately after your 
session. 

1.3 Metal Halide Lamps (MHL) 

Metal halide lamps are fluorescence lamps that emit a visible light range of 300 

 650nm, 

enabling us to observe fluorescence signals such as GFP, DAPI and RFP. Metal halide lamps 
contain mercury vapours that are extremely toxic to the human body. Therefore, please 
take note of the following safety guidelines when working with the metal halide lamp: 

 

Ensure that the metal halide lamp has been off for at least 30 minutes before 
switching it on. Once the lamp has been turned on, it must remain on for a minimum 

Summary of Contents for FV3000

Page 1: ...oking and System Access 4 3 1 Acknowledgements 5 4 Operation Procedures 5 4 1 Switching ON Protocol 5 4 2 Objective lens 6 4 2 Software Initiation 7 4 3 Setting up directory to save images 8 4 4 Laser...

Page 2: ...Immersion Oil Modern immersion oil has no known hazards to human beings so far yet they can cause discomfort to a person if the immersion oil has been left on skin for too long or inhaled Therefore pl...

Page 3: ...taff before they are allowed to access the confocal system 2 1 To arrange a training session Please email Bioimaging Facility bioimaging tll org sg for a training session Fill in the necessary particu...

Page 4: ...er 6pm Sat Sun Public holidays If users require more slots in a particular week they can book on weekdays during non peak hours after 6pm on weekends Sat and Sun and on public holidays If extra time i...

Page 5: ...RT TIMING b Switch on the Master switch on the wall 1 PC 2 Wait until windows icon pops up c Switch on Stage controller box 3 CBH controller 4 d Optional Turn on the Metal Halide lamp 5 if needed e Tu...

Page 6: ...t to 10x objective or lower then click YES Cleaning the stage will take some time b Otherwise click NO to skip cleaning 4 2 Objective lens Objective lens Immersion media 1 25x 0 04 Plan Apochromat Air...

Page 7: ...n the stage mechanism This adds time to the initialization process Do not place anything on the stage mechanism until the initialization process is complete If you are not the first user of the week C...

Page 8: ...y to save all your images Please save in your folder You have several different options on where you can save your images Option 1 D or E Users shaalini create your own folder BPAE cells oir Do keep i...

Page 9: ...oduce intense background noise SD keep HV within 600 800 More than 800 will contribute to intense background noise Under PMT settings tab Mode Select VBF Average average a given number of scans to get...

Page 10: ...to zoom images only in the center Ideal zoom which satisfy the Nyquist limit can be achieved by zooming till the red arrow any zoom beyond it will result in poor resolution and result in more photoble...

Page 11: ...the laser power until red pixels disappear Increase Offset until a dusting of blue pixels in the background are observed Click LSM start to capture an image 4 7 How to do a Z stack for a 3D Image xyz...

Page 12: ...your timelapse experiment Interval FreeRun continues to capture images until it has completed your selected cycle You could always choose an interval of your choice 4 9 Reuse previous settings and ex...

Page 13: ...h the sample and return the stage to central position d Carefully clean the objective lens with Whatman lens tissue using 100 ethanol e Switch lens back to 10x 0 3 objective lens f Exit the FV31S SW s...

Page 14: ...ission please contact Bioimaging Group No stage movement Check the coarse fine movement setting near the focus and xy position knobs It is a physical button that has no electronic indication elsewhere...

Page 15: ...id white or coloured light sometimes red light might be indicative of error III Restart the main controller right at the bottom if none of the steps taken work especially if the machine has been left...

Page 16: ...and cannot be recovered Restart computer terminal Startup popup error code LAST_OPERATION_ NONCOMPLETED The last user did not shut down the program properly or the program encountered a fatal error du...

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