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2-11

Hardware Setup

MS-98E1

Connector

Fan Power Connector: CPUFAN1, SYSFAN1

The fan power connectors support system cooling fan with +12V. When con-

necting the wire to the connectors, always note that the red wire is the positive

and should be connected to the +12V; the black wire is Ground and should be

connected to GND. If the motherboard has a System Hardware Monitor chipset

onboard, you must use a specially designed fan with speed sensor to take advan-

tage of the CPU fan control.

Important

•

Please refer to the recommended CPU fans at processor’s official website or

consult the vendors for proper CPU cooling fan.

•

Fan cooler sets with 3- or 4-pin power connector are both available.

Serial ATA Connector: SATA1, SATA2, SATA3, SATA4

(4 x

SATA 6Gb/s for SKU1, 3 x SATA 6Gb/s for SKU2)

This connector is a high-speed Serial ATA interface port. Each connector can

connect to one Serial ATA device.

Important

Please do not fold the SATA cable into a 90-degree angle. Otherwise, data loss

may occur during transmission.

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Summary of Contents for MS-98E1

Page 1: ...i MS 98E1 v1 x Industrial Computer Board ...

Page 2: ...he right to make changes without notice Trademarks All trademarks are the properties of their respective owners Revision History Revision Date V1 1 2020 09 Technical Support If a problem arises with your system and no solution can be obtained from the user s manual please contact your place of purchase or local distributor Alternatively please visit the MSI website for technical guide BIOS updates...

Page 3: ...ce anything over the power cord Always Unplug the Power Cord before inserting any add on card or mod ule All cautions and warnings on the equipment should be noted Never pour any liquid into the opening that could damage or cause electrical shock If any of the following situations arises get the equipment checked by ser vice personnel The power cord or plug is damaged Liquid has penetrated into th...

Page 4: ...ed household waste Please use the public collection system to return recycle or treat them in compliance with the local regulations 廢電池請回收 Taiwan For better environmental protection waste batteries should be collected separately for recycling or special disposal California USA The button cell battery may contain perchlorate material and requires special handling when recycled or disposed of in Cal...

Page 5: ...asures listed below Reorient or relocate the receiving antenna Increase the separation between the equipment and receiver Connect the equipment into an outlet on a circuit different from that to which the receiver is connected Consult the dealer or an experienced radio television technician for help Notice 1 The changes or modifications not expressly approved by the party responsible for complianc...

Page 6: ...tement v WEEE Statement v 1 Overview 1 1 Motherboard Specifications 1 2 Motherboard Layout 1 5 2 Hardware Setup 2 1 CPU Central Processing Unit 2 3 Memory 2 6 Power Supply 2 7 Rear Panel I O 2 8 Connector 2 11 Jumper 2 16 Slot 2 18 3 BIOS Setup 3 1 Entering Setup 3 2 The Menu Bar 3 4 Main 3 5 Advanced 3 6 Boot 3 12 Security 3 13 Chipset 3 19 Power 3 20 Save Exit 3 21 Appendix WDT GPIO A 1 WDT Samp...

Page 7: ...imal system efficiency the MS 98E1 accommodates the Intel Skylake S processor and supports up to 2 DDR4 2133MHz SO DIMM slots to provide the maximum of 32GB memory capacity Designed to withstand harsh industrial conditions the MS 98E1 is engineered to provide reliable performance for a wide variety of industrial applications 1 Overview ...

Page 8: ...x SO DIMM slots Dual channel DDR4 up to 2133MHz ECC for C236 SKU1 Non ECC for H110 SKU2 Up to 32GB Network 1 x Intel I211 AT GbE LAN 1 x Intel I219 LM GbE LAN PHY Storage SKU1 4 x SATA 6Gb s RAID 0 1 5 10 1 x mSATA SKU2 3 x SATA 6Gb s 1 x mSATA Expansion Slot 1 x PCIe x16 slot 1 x full size Mini PCIe slot 1 x M 2 slot M Key PCIe x4 SATA 6Gb s SKU1 only ...

Page 9: ...wer jumper 1 x ME jumper Rear I O 1 x PS 2 mouse keyboard combo port 2 x USB2 0 ports 1 x RS 232 422 485 serial port 0V 5V 12V 1 x HDMI port 1 x VGA port 1 x DVI D port 2 x RJ45 GbE LAN ports 4 x USB3 0 ports 3 x Audio jacks Line In Line Out Mic In Graphics Integrated Intel HD Graphics 1 x VGA Max resolution 1920 x 1200 1 x DVI D Max resolution 1920 x 1200 1 x HDMI Max resolution 3840 x 2160 1 x L...

Page 10: ... Temperature 20 80o C Humidity 5 95 RH non condensing Form Factor Mini ITX 170 mm x 170 mm Certification CE FCC BSMI VCCI C Tick SKU Comparison SKUs Features SKU1 SKU2 PCH C236 H110 Memory DDR4 support ECC DDR4 non ECC SATA 4 x SATA 6Gb s 3 x SATA 6Gb s M 2 Yes No ...

Page 11: ...nnector PCIe Slot Rear Panel Amplifier Header TPM Header Front Panel Header COM Port Header COM Port Jumper SO DIMM Slots Mini PCIe Slot M 2 Slot LVDS Connector USB Port ME Jumper LVDS Inverter Connector LVDS Power Jumper S PDIF Connector Serial Port Mouse Keyboard Combo Port USB2 0 Ports HDMI Port VGA Port USB3 0 Ports RJ45 GbE LAN Port DVI D Port Line In Line Out Mic In RJ45 GbE LAN Port USB3 0 ...

Page 12: ......

Page 13: ...llation be careful in holding the com ponents and follow the installation procedures For some components if you install in the wrong orientation the components will not work prop erly Use a grounded wrist strap before handling computer components Static electricity may damage the components 2 Hardware Setup ...

Page 14: ... 12 USB2 0 Connector JUSB1 JUSB2 2 12 Audio Amplifier Connector JSPK1 2 13 S PDIF Out Connector JSPDI1 2 13 Front Panel Header JFP1 2 13 LVDS Inverter Connector JINVDD1 2 14 LVDS Connector JLVDS1 2 14 RS 232 COM Port Header JCOM3 2 15 LPC Debug Port Connector JTPM1 With TPM Support 2 15 Jumper 2 16 Clear CMOS Jumper J_CMOS1 2 16 AT ATX Select Jumper JAT1 2 16 COM Port Power Jumper JCOMP1 for JCOM1...

Page 15: ... to protect the CPU from overheating Make sure that you apply an even layer of thermal paste or thermal tape between the CPU and the heatsink to enhance heat dissipation Replacing the CPU While replacing the CPU always turn off the power supply or unplug the power supply s power cord from the grounded outlet first to ensure the safety of CPU Introduction to LGA 115x CPU The surface of LGA 115x CPU...

Page 16: ... lever and remove the plastic cap 2 Lift the load lever up to fully open position 3 After confirming the CPU direction for correct mating put down the CPU in the socket housing frame Be sure to grasp on the edge of the CPU base Note that the alignment keys are matched 4 Engage the load lever while pressing down lightly onto the load plate Alignment Key Important Visually inspect if the CPU is seat...

Page 17: ...ler Turn over the motherboard to confirm that the clip ends are correctly inserted 8 Finally attach the CPU Fan cable to the CPU fan connector on the motherboard Important Confirm if your CPU cooler is firmly installed before turning on your system Do not touch the CPU socket pins to avoid damage Whenever CPU is not installed always protect your CPU socket pins with the plastic cap covered Please ...

Page 18: ...M size 2 Use the same number of ranks per DIMM Installing Memory Modules 1 Unlock the SO DIMM slot by flipping open its side clips 2 Vertically insert the SO DIMM into the slot The SO DIMM has an off center notch at the bottom that will only allow it to fit one way into the slot Push the SO DIMM deeply into the slot The side clips of the slot will automatically close when the SO DIMM is properly s...

Page 19: ...upply is inserted in the proper orienta tion and the pins are aligned Then push down the power supply firmly into the connector CPU Power Connector JPWR2 This connector is used to provide power to the CPU 4 1 2 V 2 G r o u n d 3 1 2 V 1 G r o u n d Important Make sure that all power connectors are connected to the power supply to ensure stable operation of the motherboard ...

Page 20: ...USB devices such as key board mouse or other USB compatible devices h h RS 232 422 485 Serial Port JCOM1 The serial port is a 16550A high speed communications port that sends receives 16 bytes FIFOs With Auto Flow Control and RI Function Support it supports barcode scanners barcode printers bill printers credit card machine etc 1 5 6 9 RS 232 PIN SIGNAL DESCRIPTION 1 2 3 4 5 6 7 8 9 DCD RXD TXD DT...

Page 21: ... is an all digital audio video in terface capable of transmitting uncompressed streams HDMI supports all TV format including standard enhanced or high definition video plus multi channel digital audio on a single cable h h VGA Port The DB15 pin female connector is provided for monitor h h DVI D Port The DVI D Digital Visual Interface Digital connector allows you to connect an LCD monitor It provid...

Page 22: ...ve LED Off No link Yellow Linked Blinking Data activity Speed LED Off 10 Mbps connection Green 100 Mbps connection Orange 1 Gbps connection h h USB3 0 Port The USB 3 0 port is backward compatible with USB 2 0 devices and supports data transfer rate up to 5 Gbit s SuperSpeed h h Line In Jack For external CD player tapeplayer or other audio devices h h Line Out Jack For speakers or headphones h h Mi...

Page 23: ... designed fan with speed sensor to take advan tage of the CPU fan control Important Please refer to the recommended CPU fans at processor s official website or consult the vendors for proper CPU cooling fan Fan cooler sets with 3 or 4 pin power connector are both available Serial ATA Connector SATA1 SATA2 SATA3 SATA4 4 x SATA 6Gb s for SKU1 3 x SATA 6Gb s for SKU2 This connector is a high speed Se...

Page 24: ...er the BIOS utility and clear the record 1 C I N T R U 2 G r o u n d GPIO Connector JGPIO1 This connector is provided for the General Purpose Input Output GPIO periph eral module USB2 0 Connector JUSB1 JUSB2 This connector compliant with Intel I O Connectivity Design Guide is ideal for connecting high speed USB interface peripherals such as USB HDD digital cam eras MP3 players printers modems and ...

Page 25: ...ony Philips Digital Interconnect For mat interface for digital audio transmission Front Panel Header JFP1 This front panel connector is provided for electrical connection to the front panel switches LEDs and is compliant with Intel Front Panel I O Connectivity Design Guide 1 3 1 0 N o P i n 5 R e s e t S w i t c h H D D L E D P o w e r S w i t c h P o w e r L E D 7 9 R e s e r v e d 8 6 4 2 ...

Page 26: ...light options LVDS Connector JLVDS1 The LVDS Low Voltage Differential Signal connector provides a digital interface typically used with flat panels After connecting an LVDS interface flat panel to the JLVDS1 be sure to check the panel datasheet and set the LVDS jumper to proper power voltage ...

Page 27: ...35 36 37 38 39 40 DCD RXD TXD DTR GND DSR RTS CTS POWER NC Data Carrier Detect Receive Data Transmit Data Data Terminal Ready Ground Data Set Ready Request To Send Clear To Send 5V or 12V selected by Jumper No Connection LPC Debug Port Connector JTPM1 With TPM Support This connector works as LPC debug port and supports TPM modules 1 0 N o P i n 1 4 G r o u n d 8 5 V P o w e r 1 2 G r o u n d 6 S e...

Page 28: ... With the CMOS RAM the system can automatically boot OS every time it is turned on If you want to clear the system configuration set the jumper to clear data 1 1 Normal Clear CMOS Important You can clear CMOS by shorting 2 3 pin while the system is off Then return to 1 2 pin position Avoid clearing the CMOS while the system is on it will damage the motherboard AT ATX Select Jumper JAT1 This jumper...

Page 29: ...fy the operation voltage of the onboard serial ports JCOMP2 for JCOM3 5V 12V 1 1 1 1 5V RI Support JCOMP1 for JCOM1 LVDS Power Jumper JVDD1 Use this jumper to specify the operation voltage of the LVDS display 1 1 3V 5V ME Jumper ME_DIS1 This jumper enables disables ME 1 1 Normal ME Disable ...

Page 30: ...press Slot The Mini PCIe slot is provided for WiFi modules Bluetooth modules TV tuner cards and other Mini PCIe cards Important When adding or removing expansion cards make sure that you unplug the power supply first Meanwhile read the documentation for the expansion card to config ure any necessary hardware or software settings for the expansion card such as jumpers switches or BIOS configuration...

Page 31: ...message appears on the screen at system startup and re quests users to run SETUP Users want to change the default settings for customized features Important Please note that BIOS update assumes technician level experience As the system BIOS is under continuous update for better system performance the illustrations in this chapter should be held for reference only 3 BIOS Setup ...

Page 32: ...efore you respond and you still wish to enter Setup restart the system by turning it OFF and On or pressing the RESET button You may also restart the system by simultaneously pressing Ctrl Alt and De lete keys Important The items under each BIOS category described in this chapter are under continuous update for better system performance Therefore the description may be slightly different from the ...

Page 33: ...a right pointer symbol appears to the left of certain fields that means a sub menu can be launched from this field A sub menu contains additional op tions for a field parameter You can use arrow keys to highlight the field and press Enter to call up the sub menu Then you can use the control keys to enter values and move from field to field within a sub menu If you want to return to the main menu j...

Page 34: ...specify the priority of boot devices Security Use this menu to set supervisor and user passwords Chipset This menu controls the advanced features of the onboard chipsets Power Use this menu to specify your settings for power management Save Exit This menu allows you to load the BIOS default values or factory default settings into the BIOS and exit the BIOS setup utility with or without changes ...

Page 35: ...ng allows you to set the system date The date format is Day Month Date Year System Time This setting allows you to set the system time The time format is Hour Min ute Second SATA Mode Selection This setting specifies the SATA controller mode ...

Page 36: ... the booting sequence This delay ensures that the logo is displayed for a suf ficient amount of time Therefore it is recommended that you disable this BIOS feature for a faster boot up time Bootup NumLock State This setting is to set the Num Lock status when the system is powered on Setting to On will turn on the Num Lock key when the system is powered on Setting to Off will allow users to use the...

Page 37: ...r the processor disables code exe cution preventing damage or worm propagation Hyper Threading The processor uses Hyper Threading technology to increase transaction rates and reduces end user response times The technology treats the two cores inside the processor as two logical processors that can execute instruc tions simultaneously In this way the system performance is highly improved If you dis...

Page 38: ...t Mode Select Select an operation mode for Serial Port 1 Power Voltage Select the power voltage for Serial Port 1 Watch Dog Timer You can enable the system watch dog timer a hardware timer that generates a reset when the software that it monitors does not respond as expected each time the watch dog polls it FIFO Mode This setting controls the FIFO data transfer mode Shared IRQ Mode This setting pr...

Page 39: ...ltages temperatures and all fans speeds Smart Fan Configuration CPUFAN1 SYSFAN1 These settings enable disable the Smart Fan function Smart Fan is an ex cellent feature which will adjust the CPU system fan speed automatically de pending on the current CPU system temperature avoiding the overheating to damage your system ...

Page 40: ...tem that does not support or have any USB 1 1 2 0 driver installed such as DOS and SCO Unix Audio Controller This setting enables disables the onboard audio controller Launch OnBoard LAN OpROM These settings enable disable the initialization of the onboard onchip LAN Boot ROM during bootup Selecting Disabled will speed up the boot process ...

Page 41: ...3 11 MS 98E1 GPIO Group Configuration GPO0 GPO3 Data These settings control the operation mode of the specified GPIO ...

Page 42: ...o speed up the boot process Video This setting controls the execution of UEFI and Legacy Video OpROM Boot Option Priorities This setting allows users to set the sequence of boot devices where BIOS at tempts to load the disk operating system Hard Drive BBS Priorities This setting allows users to set the priority of the specified devices First press Enter to enter the sub menu Then you may use the a...

Page 43: ...e system at boot and to the BIOS Setup utility Chassis Intrusion The field enables or disables the feature of recording the chassis intrusion status and issuing a warning message if the chassis is once opened Intel Trusted Execution Technology Intel Trusted Execution Technology provides highly scalable platform security in physical and virtual infrastructures ...

Page 44: ...nformation of the Intel ME Management Engine ME State This setting specifies the Intel Management Engine state Manageability Features State This setting specifies the Intel ME Manageability Features AMT BIOS Features This setting specifies the AMT BIOS Features AMT Configuration Intel Active Management Technology AMT is hardware based technology for remotely managing and securing PCs out of band ...

Page 45: ...Core BIOS Done Message This setting enables disables the Core BIOS Done Message Firmware Update Configuration ME FW Image Re Flash This setting enables disables the ME FW image reflash PTT Configuration Intel Platform Trust Technology PTT is a platform functionality for credential storage and key management used by Microsoft Windows ...

Page 46: ...iguration Trusted Computing Security Device Support This setting enables disables BIOS support for security device When set to Disable the OS will not show security device TCG EFI protocol and INT1A interface will not be available ...

Page 47: ...tion of console re direction When set to Enabled BIOS redirects and sends all contents that should be displayed on the screen to the serial COM port for display on the terminal screen Besides all data received from the serial port is interpreted as keystrokes from a local keyboard Console Redirection Settings Terminal Type To operate the system s console redirection you need a terminal supporting ...

Page 48: ... flow of data from one device to another to ensure that the receiving device can handle all of the incoming data This is particularly important where the sending device is capable of sending data much faster than the receiving device can receive it VT UTF8 Combo Key Support This setting enables disables the VT UTF8 combination key support for ANSI VT100 terminals Recorder Mode Resolution 100x31 Th...

Page 49: ...is also known as locked memory This is because it is locked for video use only and as such is invisible and unable to be used by the operating system DVMT Total Gfx Mem This setting specifies the memory size for DVMT Primary IGFX Boot Display Use the field to select the type of device you want to use as the display s of the system LVDS This setting enables disables LVDS LCD Panel Type This setting...

Page 50: ... power failure or interrupt occurred Deep Sleep Mode The setting specifies the deep sleep mode Advanced Resume Events Control OnChip GbE USB Ring The item allows the activity of the OnChip GbE USB Ring device to wake up the system from S3 S4 sleep state PCIE PME This field specifies whether the system will be awakened from power saving modes when activity or input signal of onboard PCIE PME is det...

Page 51: ...zed Defaults Use this menu to load the default values set by the motherboard manufacturer specifically for optimal performance of the motherboard Save as User Defaults Save changes as the user s default profile Restore User Defaults Restore the user s default profile Launch EFI Shell from filesystem device This setting helps to launch the EFI Shell application from one of the available file system...

Page 52: ......

Page 53: ...2 A 1 This appendix provides the sample codes of WDT Watch Dog Timer and GPIO General Purpose Input Output Appendix WDT GPIO ...

Page 54: ...ange to WDT mov dx SIO_INDEX_Port mov al 07h out dx al mov dx SIO_DATA_Port mov al WatchDog_LDN out dx al Acive WDT mov dx SIO_INDEX_Port mov al 30h out dx al mov dx SIO_DATA_Port in al dx or al 01h out dx al set timer mov dx SIO_INDEX_Port mov al 0F6h out dx al mov dx SIO_DATA_Port mov al WDT_Timer out dx al set UINT mov dx SIO_INDEX_Port mov al 0F5h out dx al mov dx SIO_DATA_Port mov al WDT_UNIT...

Page 55: ...A_Port equ 04Fh SIO_UnLock_Value equ 087h SIO_Lock_Value equ 0AAh SIO_LDN_GPIO equ 06h GPI_REG equ 08Ah GPO_REG equ 082h GPO_0 equ 00010000b Sample Code 1 Get GPI 0 status Enable config mode mov dx SIO_INDEX_Port mov al SIO_UnLock_Value out dx al jmp short 2 Io_delay jmp short 2 Io_delay out dx al Switch GPIO Configuration for SIO LDN 0x06 mov dx SIO_INDEX_Port mov al 07h out dx al mov dx SIO_DATA...

Page 56: ... al SIO_UnLock_Value out dx al jmp short 2 Io_delay jmp short 2 Io_delay out dx al Switch GPIO Configuration for SIO LDN 0x06 mov dx SIO_INDEX_Port mov al 07h out dx al mov dx SIO_DATA_Port mov al SIO_LDN_GPIO out dx al Set GPO 0 Pin to High mov dx SIO_INDEX_Port mov al GPO_REG out dx al mov dx SIO_DATA_Port in al dx or al GPO_0 out dx al al bit4 GP0 0 status Exit SIO mov dx SIO_INDEX_Port mov al ...

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