Beckman Coulter CEQ 8000, User Manual

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Navigation and Editing
User’s Guide 217
Displaying the Discrepancy Map
The Discrepancy Map toolbar allows you to look for areas of interest in relationship to
the reference. You may view the coverage of the consensus and sample sequence(s).
You may also view the color-coded locations in the experiment of any type of
attributes of interest that you specify.
Figure 127:Discrepancy Map toolbar
The top bar,
➊
, in the discrepancy map represents the reference sequence.
The second
➋
and third
➌
bar (if two sample sequences were selected) displays the
coverage of the sample sequences in relation to the reference.
The next area,
➍
, represents the consensus and shows the color-coded regions of
interest associated with the specified attributes.
A red marker behind the reference, sample and consensus bars corresponds to the
selected area in the trace data view and the selected base in the trace text view. You can
use this toolbar to navigate to desired areas by clicking on any point of interest. The
Alignment and Trace Data panes will refresh and display that area.
For a global view of the desired attributes, check the check box(s) located on the right
side of the map. For each attribute checked, a new bar will be added to the consensus
area showing the location(s) where the selected attribute exists. To change the
color-code of the Attribute Display, click on the color well at the left of the attribute.
The color palette is displayed. Select a new color, then click on OK. The new color
will be used for that attribute in the Discrepancy Map.
➊
➋
➌
➍